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ONTOLOGY REPORT - ANNOTATIONS

Term:glycogen biosynthetic process
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Accession:GO:0005978 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen anabolism;   glycogen biosynthesis;   glycogen formation;   glycogen synthesis
 xref: MetaCyc:GLYCOGENSYNTH-PWY;   MetaCyc:PWY-5067;   MetaCyc:PWY-7900


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glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-Coenzyme A dehydrogenase, medium chain involved_in IMP (MGI:4412440|PMID:18459129) BHF-UCL PMID:18459129 MGI:4412440 NCBI chr 3:153,627,990...153,650,280
Ensembl chr 3:153,627,994...153,650,269 		JBrowse link
G Akt1 thymoma viral proto-oncogene 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr12:112,620,260...112,641,266
Ensembl chr12:112,620,255...112,641,318 		JBrowse link
G Akt2 thymoma viral proto-oncogene 2 acts_upstream_of_or_within IEA UniProt GO_REF:0000043 MGI:1354194 NCBI chr 7:27,290,977...27,340,251
Ensembl chr 7:27,290,977...27,340,251 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha acts_upstream_of_or_within
involved_in		 IMP
IDA
IGI		 (PMID:28536304)
(PMID:17118331)
(PMID:31042462)
(PMID:18040046)		 MGI PMID:17118331 PMID:18040046 PMID:28536304 PMID:31042462 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of IMP (PMID:24142699) MGI PMID:24142699 NCBI chr 9:111,100,913...111,108,161
Ensembl chr 9:111,100,997...111,108,161 		JBrowse link
G Gbe1 1,4-alpha-glucan branching enzyme 1 involved_in ISO
IBA
IMP		 (PMID:21856731)
(PMID:31042462)
(PMID:21075835)		 RGD
GO_Central
MGI		 PMID:6449198 PMID:21075835 PMID:21856731 PMID:31042462 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:1642743 NCBI chr16:70,110,837...70,366,608
Ensembl chr16:70,110,837...70,366,604 		JBrowse link
G Gck glucokinase involved_in ISO RGD
MGI		 PMID:17028192 GO_REF:0000096 MGI:4417868 RGD:1581879 NCBI chr11:5,850,816...5,900,081
Ensembl chr11:5,850,820...5,900,081 		JBrowse link
G Gyg1 glycogenin 1 involved_in ISO
IBA
IMP		 (PMID:33219378) RGD
GO_Central
MGI		 PMID:8224611 PMID:10710493 PMID:33219378 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:2303736 RGD:2304070 NCBI chr 3:20,176,248...20,209,228
Ensembl chr 3:20,176,248...20,209,481 		JBrowse link
G Gys1 glycogen synthase 1, muscle involved_in
acts_upstream_of_or_within		 ISO
IDA
IMP
IBA		 (PMID:21356517)
(PMID:33219378)
(PMID:17118331), (PMID:20300197)
(PMID:15282316)		 RGD
MGI
GO_Central		 PMID:6449198 PMID:7671134 PMID:15282316 PMID:17118331 PMID:20300197 More... GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:1642743 RGD:2303748 NCBI chr 7:45,084,263...45,106,041
Ensembl chr 7:45,084,268...45,106,043 		JBrowse link
G Gys2 glycogen synthase 2 involved_in ISO
IBA
IMP		 (PMID:28483921) RGD
GO_Central
MGI		 PMID:114169 PMID:6449198 PMID:15138155 PMID:28483921 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:1582633 RGD:1642743 RGD:2304128 NCBI chr 6:142,368,339...142,418,856
Ensembl chr 6:142,368,339...142,418,835 		JBrowse link
G Nhlrc1 NHL repeat containing 1 involved_in
acts_upstream_of_or_within		 IMP
IGI		 (PMID:31042462)
(PMID:28536304)
(PMID:20538597)		 MGI PMID:20538597 PMID:28536304 PMID:31042462 NCBI chr13:47,166,033...47,168,326
Ensembl chr13:47,166,033...47,168,326 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 involved_in IMP (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr11:98,658,758...98,666,233
Ensembl chr11:98,658,758...98,666,159 		JBrowse link
G Per2 period circadian clock 2 involved_in IMP (MGI:4429726|PMID:20159955) UniProt PMID:20159955 MGI:4429726 NCBI chr 1:91,343,699...91,387,028
Ensembl chr 1:91,343,704...91,387,046 		JBrowse link
G Pgm1 phosphoglucomutase 1 involved_in ISO (PMID:28882528) MGI PMID:28882528 NCBI chr 4:99,786,648...99,844,491
Ensembl chr 4:99,786,611...99,844,491 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IGI (PMID:24265765) MGI PMID:24265765 NCBI chr 5:64,250,258...64,285,698
Ensembl chr 5:64,250,293...64,285,694 		JBrowse link
G Phkg1 phosphorylase kinase gamma 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 5:129,892,272...129,907,953
Ensembl chr 5:129,892,262...129,927,390 		JBrowse link
G Phkg2 phosphorylase kinase, gamma 2 (testis) involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 7:127,169,252...127,182,479
Ensembl chr 7:127,172,512...127,182,479 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in
acts_upstream_of_or_within		 IDA
IMP		 (PMID:9045612)
(PMID:10683377)		 MGI PMID:9045612 PMID:10683377 NCBI chr19:36,709,131...36,714,004
Ensembl chr19:36,709,131...36,714,053 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of IMP
IDA		 (PMID:21471512) MGI PMID:21471512 NCBI chr13:36,142,816...36,154,371
Ensembl chr13:36,142,822...36,154,371 		JBrowse link
G Ptges3 prostaglandin E synthase 3 acts_upstream_of_or_within IMP (PMID:17438133) MGI PMID:17438133 NCBI chr10:127,894,851...127,913,123
Ensembl chr10:127,894,823...127,913,141 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 involved_in IMP
ISO		 (PMID:32286295)
(PMID:34330832)		 MGI PMID:32286295 PMID:34330832 GO_REF:0000119 MGI:4834177 NCBI chr11:21,271,126...21,321,267
Ensembl chr11:21,271,138...21,321,201 		JBrowse link
negative regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1810024B03Rik RIKEN cDNA 1810024B03 gene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:127,028,204...127,050,200
Ensembl chr 2:127,028,275...127,050,200 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 involved_in ISO RGD
MGI		 PMID:8349040 GO_REF:0000096 MGI:4417868 RGD:1625425 NCBI chr 6:87,019,828...87,069,189
Ensembl chr 6:87,019,828...87,069,179 		JBrowse link
G Grb10 growth factor receptor bound protein 10 involved_in TAS
ISO		 (MGI:3847873|PMID:15664450) BHF-UCL
MGI		 PMID:15664450 GO_REF:0000096 MGI:3847873 MGI:4417868 NCBI chr11:11,880,499...11,987,428
Ensembl chr11:11,880,508...11,988,683 		JBrowse link
G Inpp5k inositol polyphosphate 5-phosphatase K involved_in IMP
IBA
ISO		 (MGI:5294535|PMID:19250614) UniProt
GO_Central
MGI		 PMID:19250614 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:5294535 NCBI chr11:75,519,893...75,539,691
Ensembl chr11:75,521,814...75,539,697 		JBrowse link
G Insr insulin receptor ISO RGD PMID:26300412 RGD:11529553 NCBI chr 8:3,200,922...3,329,649
Ensembl chr 8:3,172,061...3,329,617 		JBrowse link
G Mir15b microRNA 15b acts_upstream_of ISO (PMID:26179126) ARUK-UCL PMID:26179126 NCBI chr 3:68,917,105...68,917,168
Ensembl chr 3:68,917,105...68,917,168 		JBrowse link
G Mir195a microRNA 195a acts_upstream_of ISO (PMID:25240198) ARUK-UCL PMID:25240198 NCBI chr11:70,125,868...70,125,961
Ensembl chr11:70,125,868...70,125,961 		JBrowse link
G Pask PAS domain containing serine/threonine kinase involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:93,237,165...93,271,237
Ensembl chr 1:93,236,492...93,271,204 		JBrowse link
G Prkag3 protein kinase, AMP-activated, gamma 3 non-catalytic subunit acts_upstream_of_or_within IMP (PMID:15857891) MGI PMID:15857891 NCBI chr 1:74,778,062...74,788,623
Ensembl chr 1:74,778,081...74,788,380 		JBrowse link
positive regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 thymoma viral proto-oncogene 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:112,620,260...112,641,266
Ensembl chr12:112,620,255...112,641,318 		JBrowse link
G Akt2 thymoma viral proto-oncogene 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:27,290,977...27,340,251
Ensembl chr 7:27,290,977...27,340,251 		JBrowse link
G C1qtnf2 C1q and tumor necrosis factor related protein 2 acts_upstream_of_or_within IDA (PMID:15231994) MGI PMID:15231994 NCBI chr11:43,364,984...43,382,485
Ensembl chr11:43,365,103...43,382,352 		JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:14640889 RGD:1600636 NCBI chr 5:17,986,680...18,093,828
Ensembl chr 5:17,986,688...18,093,799 		JBrowse link
G Dyrk2 dual-specificity tyrosine phosphorylation regulated kinase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,691,507...118,725,144
Ensembl chr10:118,691,508...118,706,114 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:24142699) MGI
GO_Central		 PMID:24142699 GO_REF:0000033 NCBI chr 9:111,100,913...111,108,161
Ensembl chr 9:111,100,997...111,108,161 		JBrowse link
G Esrrb estrogen related receptor, beta involved_in IDA
ISO		 (MGI:5905261|PMID:24481529) BHF-UCL
MGI		 PMID:24481529 GO_REF:0000096 MGI:4417868 MGI:5905261 NCBI chr12:86,407,891...86,568,402
Ensembl chr12:86,407,891...86,568,402 		JBrowse link
G Gck glucokinase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:5,850,816...5,900,081
Ensembl chr11:5,850,820...5,900,081 		JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904 		JBrowse link
G Igf2 insulin-like growth factor 2 acts_upstream_of IMP (MGI:4438697|PMID:20032056) BHF-UCL PMID:20032056 MGI:4438697 NCBI chr 7:142,204,505...142,220,566
Ensembl chr 7:142,204,503...142,220,553 		JBrowse link
G Ins1 insulin I involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:52,252,735...52,253,453
Ensembl chr19:52,252,735...52,253,914 		JBrowse link
G Ins2 insulin II involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:142,232,393...142,233,463
Ensembl chr 7:142,232,393...142,297,118 		JBrowse link
G Insr insulin receptor acts_upstream_of
involved_in		 IMP
ISO		 (MGI:4438697|PMID:20032056) BHF-UCL
MGI		 PMID:20032056 GO_REF:0000119 MGI:4438697 MGI:4834177 NCBI chr 8:3,200,922...3,329,649
Ensembl chr 8:3,172,061...3,329,617 		JBrowse link
G Irs1 insulin receptor substrate 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:82,210,826...82,269,160
Ensembl chr 1:82,210,822...82,269,137 		JBrowse link
G Irs2 insulin receptor substrate 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:11,034,681...11,058,929
Ensembl chr 8:11,034,681...11,058,458 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr14:55,113,054...55,114,995
Ensembl chr14:55,110,126...55,115,007 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G acts_upstream_of_or_within IMP
IDA		 (PMID:21471512) MGI PMID:21471512 NCBI chr13:36,142,816...36,154,371
Ensembl chr13:36,142,822...36,154,371 		JBrowse link
G Pth parathyroid hormone involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:112,984,783...112,987,879
Ensembl chr 7:112,984,787...112,987,777 		JBrowse link
G Sorbs1 sorbin and SH3 domain containing 1 involved_in IMP (MGI:3690172|PMID:11001060) BHF-UCL PMID:11001060 MGI:3690172 NCBI chr19:40,280,484...40,502,399
Ensembl chr19:40,283,197...40,502,223 		JBrowse link
regulation of glycogen biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 thymoma viral proto-oncogene 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:112,620,260...112,641,266
Ensembl chr12:112,620,255...112,641,318 		JBrowse link
G Inpp5k inositol polyphosphate 5-phosphatase K involved_in IMP (MGI:5294535|PMID:19250614) UniProt PMID:19250614 MGI:5294535 NCBI chr11:75,519,893...75,539,691
Ensembl chr11:75,521,814...75,539,697 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO RGD
MGI		 PMID:17142137 GO_REF:0000096 MGI:4417868 RGD:1625611 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISO RGD
MGI		 PMID:7720853 GO_REF:0000096 MGI:4417868 RGD:2304267 NCBI chr19:4,242,173...4,245,418
Ensembl chr19:4,242,064...4,245,419 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in ISO RGD
MGI		 PMID:7720853 GO_REF:0000096 MGI:4417868 RGD:2304267 NCBI chr 5:32,616,192...32,651,057
Ensembl chr 5:32,616,187...32,674,777 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:14,713,821...14,755,273
Ensembl chr 6:14,713,976...14,755,273 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:7720853 PMID:11716774 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2304267 RGD:2306167 NCBI chr 8:35,842,847...35,855,293
Ensembl chr 8:35,842,893...35,855,293 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:11716774 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2306167 NCBI chr19:36,709,131...36,714,004
Ensembl chr19:36,709,131...36,714,053 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:11716774 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2306167 NCBI chr 2:178,052,999...178,056,256
Ensembl chr 2:178,052,999...178,056,265 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:15752363 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2306166 NCBI chr14:55,113,054...55,114,995
Ensembl chr14:55,110,126...55,115,007 		JBrowse link
G Ppp1r3f protein phosphatase 1, regulatory subunit 3F acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:21668450) MGI
GO_Central		 PMID:21668450 GO_REF:0000033 NCBI chr  X:7,424,815...7,440,541
Ensembl chr  X:7,423,535...7,440,522 		JBrowse link
G Ppp1r3g protein phosphatase 1, regulatory subunit 3G involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:36,142,816...36,154,371
Ensembl chr13:36,142,822...36,154,371 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28577
    metabolic process 11012
      macromolecule metabolic process 8862
        macromolecule biosynthetic process 6879
          polysaccharide biosynthetic process 71
            glucan biosynthetic process 51
              glycogen biosynthetic process 51
                negative regulation of glycogen biosynthetic process 10
                positive regulation of glycogen biosynthetic process 19
                regulation of glycogen biosynthetic process + 36
Path 2
Term Annotations click to browse term
  biological_process 28577
    metabolic process 11012
      primary metabolic process 9522
        carbohydrate metabolic process 592
          polysaccharide metabolic process 121
            glucan metabolic process 98
              glucan biosynthetic process 51
                glycogen biosynthetic process 51
                  negative regulation of glycogen biosynthetic process 10
                  positive regulation of glycogen biosynthetic process 19
                  regulation of glycogen biosynthetic process + 36
paths to the root