Nr1d1 (nuclear receptor subfamily 1, group D, member 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nr1d1 (nuclear receptor subfamily 1, group D, member 1) Mus musculus
Analyze
Symbol: Nr1d1
Name: nuclear receptor subfamily 1, group D, member 1
RGD ID: 736119
MGI Page MGI
Description: Enables DNA-binding transcription factor activity and E-box binding activity. Involved in several processes, including cellular response to cytokine stimulus; negative regulation of neuroinflammatory response; and regulation of cellular biosynthetic process. Acts upstream of or within circadian rhythm and regulation of transcription, DNA-templated. Located in cytoplasm; dendritic spine; and nucleus. Is expressed in several structures, including alimentary system; connective tissue; genitourinary system; liver and biliary system; and nervous system. Orthologous to human NR1D1 (nuclear receptor subfamily 1 group D member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A530070C09Rik; EAR-1; nuclear receptor protein; nuclear receptor subfamily 1 group D member 1; orphan nuclear receptor; R75201; rev-erb alpha; rev-erbA alpha; rev-erbA(alpha); Rev-ErbA-alpha protein; REV-ERBalpha; V-erbA-related protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,658,758 - 98,666,233 (-)NCBIGRCm39mm39
GRCm39 Ensembl1198,658,758 - 98,666,159 (-)Ensembl
GRCm381198,767,932 - 98,775,377 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,767,932 - 98,775,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,629,249 - 98,636,556 (-)NCBIGRCm37mm9NCBIm37
MGSCv361198,584,022 - 98,590,912 (-)NCBImm8
Celera11108,422,591 - 108,429,908 (-)NCBICelera
Cytogenetic Map11DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-amino-4,6-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[ghi]perylene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP,ISO)
cefaloridine  (ISO)
CGS-21680  (ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
chrysene  (EXP)
clofibrate  (EXP)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP,ISO)
dichloroacetic acid  (EXP)
dichloromethane  (EXP)
dicrotophos  (ISO)
diethyl maleate  (ISO)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
fluoranthene  (EXP)
folic acid  (ISO)
furan  (ISO)
genistein  (EXP)
geraniol  (ISO)
glyphosate  (ISO)
haloperidol  (ISO)
hexachlorobenzene  (ISO)
hyaluronic acid  (ISO)
hypochlorous acid  (EXP)
imidacloprid  (ISO)
indole-3-methanol  (ISO)
ketamine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
luteolin  (ISO)
manganese(II) chloride  (ISO)
metformin  (ISO)
methotrexate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
naphthalenes  (ISO)
nevirapine  (ISO)
orphenadrine  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
prednisolone  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SCH-351591  (ISO)
scopolamine  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP)
sodium dichromate  (EXP)
streptozocin  (ISO)
styrene  (EXP)
tamoxifen  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thiabendazole  (ISO)
titanium dioxide  (EXP,ISO)
tributylstannane  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
troglitazone  (EXP)
undecane  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (IBA)
cellular glucose homeostasis  (ISO)
cellular response to interleukin-1  (IDA)
cellular response to lipopolysaccharide  (ISO)
cellular response to tumor necrosis factor  (IDA)
cholesterol homeostasis  (IMP,ISO)
circadian regulation of gene expression  (IMP)
circadian rhythm  (IDA,IEP,ISO)
circadian temperature homeostasis  (IMP)
glycogen biosynthetic process  (IMP)
hormone-mediated signaling pathway  (IBA)
negative regulation of astrocyte activation  (IMP)
negative regulation of cold-induced thermogenesis  (IMP)
negative regulation of I-kappaB kinase/NF-kappaB signaling  (IMP)
negative regulation of inflammatory response  (IMP)
negative regulation of microglial cell activation  (IMP)
negative regulation of neuroinflammatory response  (IMP)
negative regulation of toll-like receptor 4 signaling pathway  (ISO)
negative regulation of transcription by RNA polymerase II  (IBA,ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO)
photoperiodism  (ISO)
positive regulation of bile acid biosynthetic process  (IMP)
positive regulation of circadian rhythm  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA)
positive regulation of transcription, DNA-templated  (IMP,ISO)
proteasomal protein catabolic process  (IDA)
protein destabilization  (IMP)
regulation of circadian rhythm  (IMP,ISO)
regulation of circadian sleep/wake cycle  (IMP)
regulation of fat cell differentiation  (IMP)
regulation of hepatic stellate cell activation  (ISO)
regulation of insulin secretion involved in cellular response to glucose stimulus  (IMP)
regulation of lipid metabolic process  (IMP)
regulation of transcription, DNA-templated  (IDA)
regulation of type B pancreatic cell proliferation  (IMP)
response to leptin  (IBA,IDA)
rhythmic process  (IEA)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bile salt homeostasis  (IAGP)
abnormal cerebellar granule cell morphology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal circadian behavior period  (IAGP)
abnormal circadian temperature homeostasis  (IAGP)
abnormal eye anterior chamber depth  (IEA)
abnormal eye morphology  (IEA)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell differentiation  (IAGP)
abnormal skeletal muscle fiber type ratio  (IAGP)
advanced circadian behavior phase  (IAGP)
decreased body weight  (IAGP)
decreased cardiac output  (IEA)
decreased circulating glucose level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased heart left ventricle size  (IEA)
decreased litter size  (IAGP)
decreased liver cholesterol level  (IAGP)
decreased liver triglyceride level  (IAGP)
decreased NK cell number  (IEA)
decreased respiratory quotient  (IAGP)
decreased sensitivity to induced morbidity/mortality  (IAGP)
decreased susceptibility to induced hypothermia  (IAGP)
decreased thigmotaxis  (IEA)
decreased total body fat amount  (IEA)
decreased total retina thickness  (IEA)
decreased vertical activity  (IEA)
enlarged heart  (IEA)
hyperactivity  (IEA)
increased adipocyte glucose uptake  (IAGP)
increased body temperature  (IAGP)
increased bone mineral content  (IEA)
increased circulating free fatty acids level  (IAGP)
increased circulating HDL cholesterol level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased core body temperature  (IAGP)
increased oxygen consumption  (IAGP)
increased skeletal muscle fiber size  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
reduced female fertility  (IAGP)
reduced male fertility  (IAGP)
short tibia  (IEA)
shortened circadian behavior period  (IAGP)
unresponsive to tactile stimuli  (IEA)
References

Additional References at PubMed
PMID:7838158   PMID:8889548   PMID:10349636   PMID:10704394   PMID:10707952   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12150932   PMID:12477932   PMID:14610273   PMID:14645221  
PMID:15374821   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16687287   PMID:16968709   PMID:16971476   PMID:18006707   PMID:18086663   PMID:18227153   PMID:18280802   PMID:18287559  
PMID:18454201   PMID:18565334   PMID:18946026   PMID:19228794   PMID:19487572   PMID:19710360   PMID:19721697   PMID:19926610   PMID:19926613   PMID:19955433   PMID:20018698   PMID:20059953  
PMID:20159955   PMID:20352049   PMID:20412781   PMID:20436479   PMID:20534529   PMID:20551177   PMID:20571909   PMID:20576698   PMID:20824053   PMID:20932939   PMID:21192082   PMID:21267068  
PMID:21393543   PMID:21408158   PMID:21628550   PMID:21677750   PMID:21873635   PMID:21874017   PMID:22166979   PMID:22184247   PMID:22405069   PMID:22460952   PMID:22474260   PMID:22562834  
PMID:22824754   PMID:22988430   PMID:23201262   PMID:23398316   PMID:23471982   PMID:23852339   PMID:23936124   PMID:23963755   PMID:24030830   PMID:24162845   PMID:24194600   PMID:24202171  
PMID:24307731   PMID:24311788   PMID:24395638   PMID:24498227   PMID:24552589   PMID:24794873   PMID:24813609   PMID:24932636   PMID:24952961   PMID:25190567   PMID:25212631   PMID:25238857  
PMID:25401152   PMID:25416951   PMID:25681390   PMID:26044300   PMID:26058812   PMID:26125130   PMID:26332085   PMID:26564124   PMID:26632340   PMID:26855417   PMID:26903623   PMID:27002153  
PMID:27135601   PMID:27143721   PMID:27238018   PMID:27380954   PMID:27440795   PMID:27443484   PMID:27462873   PMID:27581301   PMID:27597886   PMID:27626380   PMID:27664470   PMID:27686098  
PMID:27720799   PMID:27875243   PMID:27991918   PMID:28213272   PMID:28238550   PMID:28262759   PMID:28335007   PMID:28412351   PMID:28974420   PMID:29040059   PMID:29085009   PMID:29150901  
PMID:29277561   PMID:29397477   PMID:29401617   PMID:29439026   PMID:29508494   PMID:29533925   PMID:29590620   PMID:29653076   PMID:29688375   PMID:29723273   PMID:30028550   PMID:30096135  
PMID:30174302   PMID:30179226   PMID:30315268   PMID:30397120   PMID:30555544   PMID:30590045   PMID:30639455   PMID:30792350   PMID:30872796   PMID:31005255   PMID:31059511   PMID:31127047  
PMID:31129418   PMID:31308426   PMID:31451658   PMID:31455731   PMID:31515204   PMID:31534216   PMID:31602405   PMID:31604271   PMID:31800167   PMID:32071294   PMID:32306421   PMID:32407314  
PMID:32439175   PMID:32714209   PMID:32732282   PMID:32819599   PMID:32989157   PMID:33021965   PMID:33258449   PMID:33285244   PMID:33416111   PMID:33424933   PMID:33913482   PMID:34014841  
PMID:34117285   PMID:34350828   PMID:34493722  


Genomics

Comparative Map Data
Nr1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,658,758 - 98,666,233 (-)NCBIGRCm39mm39
GRCm39 Ensembl1198,658,758 - 98,666,159 (-)Ensembl
GRCm381198,767,932 - 98,775,377 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,767,932 - 98,775,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,629,249 - 98,636,556 (-)NCBIGRCm37mm9NCBIm37
MGSCv361198,584,022 - 98,590,912 (-)NCBImm8
Celera11108,422,591 - 108,429,908 (-)NCBICelera
Cytogenetic Map11DNCBI
NR1D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1740,092,793 - 40,100,589 (-)EnsemblGRCh38hg38GRCh38
GRCh381740,092,793 - 40,100,589 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371738,249,046 - 38,256,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,502,567 - 35,510,499 (-)NCBINCBI36hg18NCBI36
Build 341735,502,566 - 35,510,499NCBI
Celera1734,909,147 - 34,917,084 (-)NCBI
Cytogenetic Map17q21.1NCBI
HuRef1734,042,773 - 34,050,715 (-)NCBIHuRef
CHM1_11738,484,740 - 38,492,682 (-)NCBICHM1_1
Nr1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21083,728,348 - 83,735,562 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1083,728,318 - 83,735,705 (-)Ensembl
Rnor_6.01086,683,875 - 86,690,815 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,683,875 - 86,690,815 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,479,868 - 86,486,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,541,246 - 87,548,186 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11087,555,629 - 87,560,471 (-)NCBI
Celera1082,476,555 - 82,483,495 (-)NCBICelera
Cytogenetic Map10q31NCBI
Nr1d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,742,735 - 14,750,999 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,743,763 - 14,750,903 (-)NCBIChiLan1.0ChiLan1.0
NR1D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11717,409,669 - 17,417,600 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,409,669 - 17,417,600 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01717,188,390 - 17,196,315 (+)NCBIMhudiblu_PPA_v0panPan3
NR1D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,461,556 - 22,469,243 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,461,705 - 22,469,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,933,902 - 21,941,575 (+)NCBI
ROS_Cfam_1.0923,254,745 - 23,262,432 (+)NCBI
UMICH_Zoey_3.1922,028,188 - 22,035,862 (+)NCBI
UNSW_CanFamBas_1.0922,287,169 - 22,294,857 (+)NCBI
UU_Cfam_GSD_1.0922,411,920 - 22,419,594 (+)NCBI
Nr1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,861,286 - 21,868,939 (+)NCBI
SpeTri2.0NW_00493649015,206,194 - 15,213,858 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,263,657 - 22,271,643 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,263,549 - 22,274,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NR1D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,078,990 - 66,086,927 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,079,089 - 66,090,685 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607736,982,347 - 36,990,288 (+)NCBIVero_WHO_p1.0
Nr1d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247953,102,424 - 3,109,497 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH125185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,767,962 - 98,768,137UniSTSGRCm38
MGSCv371198,629,276 - 98,629,451UniSTSGRCm37
Celera11108,422,618 - 108,422,793UniSTS
Cytogenetic Map11DUniSTS
AW259572  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,768,711 - 98,768,803UniSTSGRCm38
MGSCv371198,630,025 - 98,630,117UniSTSGRCm37
Celera11108,423,377 - 108,423,469UniSTS
Cytogenetic Map11D-EUniSTS
Cytogenetic Map11DUniSTS
Whitehead/MRC_RH111306.72UniSTS
MARC_5497-5498:996690469:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,768,389 - 98,769,137UniSTSGRCm38
MGSCv371198,629,703 - 98,630,451UniSTSGRCm37
Celera11108,423,045 - 108,423,803UniSTS
Cytogenetic Map11DUniSTS
NR1D1_2626  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,767,730 - 98,768,443UniSTSGRCm38
MGSCv371198,629,044 - 98,629,757UniSTSGRCm37
Celera11108,422,385 - 108,423,099UniSTS
Cytogenetic Map11DUniSTS
THRA_2263  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381198,768,172 - 98,768,937UniSTSGRCm38
MGSCv371198,629,486 - 98,630,251UniSTSGRCm37
Celera11108,422,828 - 108,423,603UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map11D-EUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187800372103383289Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118880876299190771Mouse
1301313Pas5a_mpulmonary adenoma susceptibility 5a (mouse)Not determined118907597898974942Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1193048547112653728Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196285639108915558Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119700686799436202Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1197006867110713165Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:327
Count of miRNA genes:244
Interacting mature miRNAs:257
Transcripts:ENSMUST00000064941, ENSMUST00000139220
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF291821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY336125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD776678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X86010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000064941   ⟹   ENSMUSP00000069505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,658,758 - 98,666,159 (-)Ensembl
GRCm38.p6 Ensembl1198,767,932 - 98,775,333 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,660,173 - 98,661,252 (-)Ensembl
GRCm38.p6 Ensembl1198,769,347 - 98,770,426 (-)Ensembl
RefSeq Acc Id: NM_145434   ⟹   NP_663409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,658,758 - 98,666,203 (-)NCBI
GRCm381198,767,932 - 98,775,377 (-)NCBI
MGSCv371198,629,249 - 98,636,556 (-)RGD
Celera11108,422,588 - 108,430,043 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036156590   ⟹   XP_036012483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,658,758 - 98,666,198 (-)NCBI
RefSeq Acc Id: XR_004936927
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391198,658,758 - 98,666,233 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_663409   ⟸   NM_145434
- UniProtKB: Q3UV55 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000069505   ⟸   ENSMUST00000064941
RefSeq Acc Id: XP_036012483   ⟸   XM_036156590
- Peptide Label: isoform X1
Protein Domains
NR LBD

Promoters
RGD ID:6846871
Promoter ID:MM_ACW:8836
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR1D1.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,629,746 - 98,630,497 (-)MPROMDB
RGD ID:6821455
Promoter ID:MM_KWN:9608
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000014595
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,631,246 - 98,632,697 (-)MPROMDB
RGD ID:6846873
Promoter ID:MM_ACW:8837
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR1D1.BSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,633,196 - 98,634,152 (-)MPROMDB
RGD ID:6821457
Promoter ID:MM_KWN:9609
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000014594
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361198,636,076 - 98,637,612 (-)MPROMDB
RGD ID:8676518
Promoter ID:EPDNEW_M16289
Type:multiple initiation site
Name:Nr1d1_2
Description:Mus musculus nuclear receptor subfamily 1, group D, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16290  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381198,775,227 - 98,775,287EPDNEW
RGD ID:8676520
Promoter ID:EPDNEW_M16290
Type:initiation region
Name:Nr1d1_1
Description:Mus musculus nuclear receptor subfamily 1, group D, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16289  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381198,775,377 - 98,775,437EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444210 AgrOrtholog
Ensembl Genes ENSMUSG00000020889 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000069505 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000064941 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.50.10 UniProtKB/Swiss-Prot
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
KEGG Report mmu:217166 UniProtKB/Swiss-Prot
MGD MGI:2444210 ENTREZGENE
NCBI Gene 217166 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot
PhenoGen Nr1d1 PhenoGen
PRINTS STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot
PROSITE NR_LBD UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot
UniProt NR1D1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3UJJ1 UniProtKB/Swiss-Prot
  Q62171 UniProtKB/Swiss-Prot
  Q6EEZ6 UniProtKB/Swiss-Prot
  Q922A5 UniProtKB/Swiss-Prot
  Q9ESY4 UniProtKB/Swiss-Prot