Esrrb (estrogen related receptor, beta) - Rat Genome Database
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Gene: Esrrb (estrogen related receptor, beta) Mus musculus
Analyze
Symbol: Esrrb
Name: estrogen related receptor, beta
RGD ID: 1621573
MGI Page MGI
Description: Exhibits several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II complex binding activity. Involved in several processes, including in utero embryonic development; photoreceptor cell maintenance; and regulation of cellular macromolecule biosynthetic process. Localizes to condensed chromosome; cytoplasm; and nucleus. Colocalizes with integrator complex. Is expressed in several structures, including central nervous system; early conceptus; endocrine gland; gonad; and sensory organ. Used to study dilated cardiomyopathy. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 35. Orthologous to human ESRRB (estrogen related receptor beta); INTERACTS WITH 1,1-dichloroethene; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ER; ERR-beta; Err2; Errb; Est; estrogen receptor related 2; estrogen receptor-like 2; estrogen-related receptor beta; Estrrb; Nr3b2; nuclear receptor subfamily 3 group B member 2; steroid hormone receptor ERR2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14663  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,407,891 - 86,568,402 (+)NCBIGRCm39mm39
GRCm381286,361,117 - 86,521,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,361,117 - 86,521,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,702,067 - 87,862,578 (+)NCBIGRCm37mm9NCBIm37
MGSCv361287,250,220 - 87,410,725 (+)NCBImm8
Celera1287,822,322 - 87,982,916 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8652414   PMID:9285590   PMID:9344655   PMID:9502734   PMID:10021343   PMID:10072763   PMID:10213386   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12381664  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:12969243   PMID:14610273   PMID:14681479   PMID:14715153   PMID:15003627   PMID:15226823   PMID:15505202   PMID:15618518  
PMID:16039639   PMID:16141072   PMID:16141073   PMID:16481355   PMID:16518401   PMID:16767105   PMID:16971476   PMID:17093407   PMID:17502352   PMID:17765677   PMID:17967808   PMID:18039682  
PMID:18179891   PMID:18287559   PMID:18454139   PMID:18472334   PMID:18509053   PMID:18662995   PMID:18799693   PMID:18957414   PMID:19136965   PMID:19631715   PMID:20059953   PMID:20362541  
PMID:20412781   PMID:20437528   PMID:20534447   PMID:20708584   PMID:20720539   PMID:20876643   PMID:20932939   PMID:21056461   PMID:21267068   PMID:21519551   PMID:21589869   PMID:21677750  
PMID:21731673   PMID:21839920   PMID:21873635   PMID:22083510   PMID:22110054   PMID:22496869   PMID:22770845   PMID:22977234   PMID:23019124   PMID:23040477   PMID:23040478   PMID:23169531  
PMID:23360481   PMID:23508100   PMID:23552073   PMID:23676496   PMID:23892456   PMID:24053666   PMID:24184637   PMID:24349082   PMID:24481529   PMID:24670652   PMID:24859004   PMID:24893171  
PMID:24952961   PMID:25522312   PMID:25536399   PMID:25569111   PMID:25588837   PMID:25737630   PMID:25757744   PMID:26206133   PMID:26297811   PMID:26365490   PMID:26426291   PMID:26496610  
PMID:26523946   PMID:26584622   PMID:26663459   PMID:27015307   PMID:27179789   PMID:27586544   PMID:27601327   PMID:27723719   PMID:27820600   PMID:28011632   PMID:28049832   PMID:28130335  
PMID:28467928   PMID:28834535   PMID:28874785   PMID:29107558   PMID:29129686   PMID:29320730   PMID:30275266   PMID:30299501   PMID:31036938   PMID:31077711   PMID:31315026   PMID:31492838  
PMID:31550482   PMID:32111830   PMID:33127892  


Genomics

Comparative Map Data
Esrrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,407,891 - 86,568,402 (+)NCBIGRCm39mm39
GRCm381286,361,117 - 86,521,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,361,117 - 86,521,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,702,067 - 87,862,578 (+)NCBIGRCm37mm9NCBIm37
MGSCv361287,250,220 - 87,410,725 (+)NCBImm8
Celera1287,822,322 - 87,982,916 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.49NCBI
ESRRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1476,310,712 - 76,501,837 (+)EnsemblGRCh38hg38GRCh38
GRCh381476,371,271 - 76,501,839 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371476,837,614 - 76,968,180 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371476,837,690 - 76,968,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,907,479 - 76,036,961 (+)NCBINCBI36hg18NCBI36
Build 341475,907,478 - 76,036,961NCBI
Celera1456,875,493 - 57,005,971 (+)NCBI
Cytogenetic Map14q24.3NCBI
HuRef1457,006,242 - 57,136,798 (+)NCBIHuRef
CHM1_11476,775,473 - 76,905,976 (+)NCBICHM1_1
Esrrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26106,007,662 - 106,163,136 (+)NCBI
Rnor_6.0 Ensembl6110,410,141 - 110,455,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06110,360,940 - 110,458,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06119,600,549 - 119,756,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,589,116 - 110,635,158 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X146,790,537 - 146,792,860 (+)NCBI
Celera6103,940,309 - 103,986,414 (+)NCBICelera
Cytogenetic Map6q31NCBI
Esrrb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438365,137 - 534,666 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955438365,375 - 534,086 (+)NCBIChiLan1.0ChiLan1.0
ESRRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11475,659,836 - 76,264,827 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,839,333 - 76,266,895 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01456,868,361 - 57,060,552 (+)NCBIMhudiblu_PPA_v0panPan3
ESRRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl849,253,332 - 49,421,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1849,253,877 - 49,424,148 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Esrrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364885,350,133 - 5,452,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,514,168 - 99,699,011 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,511,135 - 99,699,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,560,818 - 105,743,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESRRB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,630,998 - 53,762,098 (+)NCBI
Esrrb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473425,261,493 - 25,369,092 (-)NCBI

Position Markers
Esrrb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381286,519,745 - 86,520,674UniSTSGRCm38
MGSCv371287,860,695 - 87,861,624UniSTSGRCm37
Celera1287,981,033 - 87,981,962UniSTS
Cytogenetic Map12D2UniSTS
cM Map1241.0UniSTS
cM Map1241.0UniSTS
D12Mit193  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381286,381,525 - 86,381,753UniSTSGRCm38
MGSCv371287,722,475 - 87,722,703UniSTSGRCm37
Celera1287,842,666 - 87,842,894UniSTS
Cytogenetic Map12D2UniSTS
cM Map1241.0UniSTS
Whitehead Genetic1236.1UniSTS
Whitehead_YAC12 UniSTS
UniSTS:236911  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381286,445,891 - 86,446,109UniSTSGRCm38
MGSCv371287,786,841 - 87,787,059UniSTSGRCm37
Celera1287,907,239 - 87,907,457UniSTS
Cytogenetic Map12D2UniSTS
cM Map1241.0UniSTS
Esrrb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12D2UniSTS
cM Map1241.0UniSTS
Esrrb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12D2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124164639290920752Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125279985286800022Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125308522887085371Mouse
4140993Tglq2b_mtriglyceride QTL 2b (mouse)Not determined125529146189291675Mouse
9850127Tglq6_mtriglyceride QTL6 (mouse)Not determined125529146189291675Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125910000093900000Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126060000092700000Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126115865395158653Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126199339095993590Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126210000099500000Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126226147896261478Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126390993497910109Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126464230998642455Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126464230998642455Mouse
14746976Manh73_mmandible shape 73 (mouse)126581035799810357Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126830000098800000Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72146107106146107Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273920648107920752Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273920648107920752Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281649471108529109Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3261
Count of miRNA genes:746
Interacting mature miRNAs:972
Transcripts:ENSMUST00000021680, ENSMUST00000110203, ENSMUST00000110204, ENSMUST00000116402, ENSMUST00000136464, ENSMUST00000167891
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02071096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF022222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV496316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB642270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X89594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000021680   ⟹   ENSMUSP00000021680
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,421,883 - 86,519,800 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110203   ⟹   ENSMUSP00000105832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,421,644 - 86,515,522 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110204   ⟹   ENSMUSP00000105833
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,421,644 - 86,521,625 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116402   ⟹   ENSMUSP00000112103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,361,117 - 86,521,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136464
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,504,409 - 86,509,967 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167891   ⟹   ENSMUSP00000131335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1286,470,117 - 86,519,065 (+)Ensembl
RefSeq Acc Id: NM_001159500   ⟹   NP_001152972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,407,891 - 86,568,402 (+)NCBI
GRCm381286,361,117 - 86,521,628 (+)ENTREZGENE
MGSCv371287,702,067 - 87,862,578 (+)RGD
Celera1287,822,322 - 87,982,916 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011934   ⟹   NP_036064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,468,418 - 86,568,402 (+)NCBI
GRCm381286,421,644 - 86,521,628 (+)NCBI
MGSCv371287,702,067 - 87,862,578 (+)RGD
Celera1287,822,322 - 87,982,916 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006515881   ⟹   XP_006515944
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,514,939 - 86,568,396 (+)NCBI
GRCm381286,468,165 - 86,521,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515882   ⟹   XP_006515945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,534,981 - 86,568,396 (+)NCBI
GRCm381286,488,207 - 86,521,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515883   ⟹   XP_006515946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,529,924 - 86,568,396 (+)NCBI
GRCm381286,483,151 - 86,521,628 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036064   ⟸   NM_011934
- Peptide Label: isoform 1
- UniProtKB: Q61539 (UniProtKB/Swiss-Prot),   G5E8P8 (UniProtKB/TrEMBL),   Q80VS1 (UniProtKB/TrEMBL),   Q8CCV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152972   ⟸   NM_001159500
- Peptide Label: isoform 2
- UniProtKB: Q61539 (UniProtKB/Swiss-Prot),   E9QKA2 (UniProtKB/TrEMBL),   Q80VS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515944   ⟸   XM_006515881
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006515946   ⟸   XM_006515883
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006515945   ⟸   XM_006515882
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000105832   ⟸   ENSMUST00000110203
RefSeq Acc Id: ENSMUSP00000105833   ⟸   ENSMUST00000110204
RefSeq Acc Id: ENSMUSP00000131335   ⟸   ENSMUST00000167891
RefSeq Acc Id: ENSMUSP00000021680   ⟸   ENSMUST00000021680
RefSeq Acc Id: ENSMUSP00000112103   ⟸   ENSMUST00000116402
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:8678858
Promoter ID:EPDNEW_M17460
Type:initiation region
Name:Esrrb_1
Description:Mus musculus estrogen related receptor, beta , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17461  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381286,421,654 - 86,421,714EPDNEW
RGD ID:8678860
Promoter ID:EPDNEW_M17461
Type:initiation region
Name:Esrrb_2
Description:Mus musculus estrogen related receptor, beta , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17460  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381286,470,116 - 86,470,176EPDNEW
RGD ID:6822929
Promoter ID:MM_KWN:12226
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000110203,   NM_011934
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361287,762,481 - 87,762,981 (+)MPROMDB
RGD ID:6822932
Promoter ID:MM_KWN:12227
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Spleen
Transcripts:UC007OHW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361287,810,976 - 87,811,476 (+)MPROMDB
RGD ID:6822931
Promoter ID:MM_KWN:12229
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000055556
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361287,844,696 - 87,845,196 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1346832 AgrOrtholog
Ensembl Genes ENSMUSG00000021255 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000021680 UniProtKB/Swiss-Prot
  ENSMUSP00000105832 UniProtKB/TrEMBL
  ENSMUSP00000105833 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000112103 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000131335 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021680 UniProtKB/Swiss-Prot
  ENSMUST00000110203 UniProtKB/TrEMBL
  ENSMUST00000110204 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000116402 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000167891 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oest-rel_rcp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oest_rcpt/oest-rel_rcp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26380 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1346832 ENTREZGENE
NCBI Gene 26380 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Esrrb PhenoGen
PIRSF ER-like_NR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERR1-2-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YW03_MOUSE UniProtKB/TrEMBL
  E9QKA2 ENTREZGENE, UniProtKB/TrEMBL
  ERR2_MOUSE UniProtKB/Swiss-Prot
  G5E8P8 ENTREZGENE, UniProtKB/TrEMBL
  Q61539 ENTREZGENE
  Q80VS1 ENTREZGENE, UniProtKB/TrEMBL
  Q8CCV5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2RTQ7 UniProtKB/Swiss-Prot
  O09067 UniProtKB/Swiss-Prot
  O09146 UniProtKB/Swiss-Prot
  Q8C7A6 UniProtKB/Swiss-Prot