Gys2 (glycogen synthase 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gys2 (glycogen synthase 2) Mus musculus
Analyze
Symbol: Gys2
Name: glycogen synthase 2
RGD ID: 733992
MGI Page MGI
Description: Enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity. Involved in glycogen biosynthetic process. Is active in cytosol. Is expressed in cerebral cortex; heart; and liver. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human GYS2 (glycogen synthase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC021322; glycogen [starch] synthase, liver; glycogen synthase, liver; L; LGS; MGC29379
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,368,339 - 142,418,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,368,339 - 142,418,835 (-)EnsemblGRCm39 Ensembl
GRCm386142,422,612 - 142,473,130 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,422,613 - 142,473,109 (-)EnsemblGRCm38mm10GRCm38
MGSCv376142,371,133 - 142,421,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366142,379,835 - 142,430,174 (-)NCBIMGSCv36mm8
MGSCv366142,999,467 - 143,049,414 (-)NCBIMGSCv36mm8
Celera6145,483,115 - 145,534,322 (-)NCBICelera
Cytogenetic Map6G2NCBI
cM Map674.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1-benzylpiperazine  (ISO)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
ciglitazone  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (EXP,ISO)
dichlorvos  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
fenthion  (EXP)
flutamide  (ISO)
glycidol  (ISO)
inulin  (EXP)
metacetamol  (EXP)
methapyrilene  (ISO)
methylarsonite  (EXP)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (ISO)
nicotinamide  (ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
obeticholic acid  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylephrine  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
procyanidin B1  (EXP,ISO)
propiconazole  (EXP)
resveratrol  (ISO)
sevoflurane  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetracycline  (ISO)
titanium dioxide  (EXP)
Triptolide  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell cortex  (ISO,ISS)
cortical actin cytoskeleton  (ISO,ISS)
cytoplasm  (IBA,ISO,ISS)
cytoskeleton  (ISO,ISS)
cytosol  (IDA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Glycogen synthase: towards a minimum catalytic unit? Cid E, etal., FEBS Lett. 2002 Sep 25;528(1-3):5-11.
2. Defect in glucokinase translocation in Zucker diabetic fatty rats. Fujimoto Y, etal., Am J Physiol Endocrinol Metab. 2004 Sep;287(3):E414-23. Epub 2004 May 11.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mutations in the liver glycogen synthase gene in children with hypoglycemia due to glycogen storage disease type 0. Orho M, etal., J Clin Invest. 1998 Aug 1;102(3):507-15.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Glycogen-binding protein components of rat tissues. Satoh K and Sato K, Biochem Biophys Res Commun. 1980 Sep 16;96(1):28-33.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14680475   PMID:14681479   PMID:15489334   PMID:16103213   PMID:16141072   PMID:16141073  
PMID:16498401   PMID:17437057   PMID:17937387   PMID:18038450   PMID:18165236   PMID:18298402   PMID:19884348   PMID:20178984   PMID:20430893   PMID:20841354   PMID:21184805   PMID:21677750  
PMID:21873635   PMID:21915269   PMID:23260145   PMID:23990365   PMID:24049741   PMID:24982189   PMID:27215380   PMID:27531557   PMID:27754787   PMID:27754788   PMID:28483921   PMID:30973865  
PMID:31553910   PMID:32798765   PMID:36396934   PMID:38183795   PMID:38355793  


Genomics

Comparative Map Data
Gys2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,368,339 - 142,418,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,368,339 - 142,418,835 (-)EnsemblGRCm39 Ensembl
GRCm386142,422,612 - 142,473,130 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,422,613 - 142,473,109 (-)EnsemblGRCm38mm10GRCm38
MGSCv376142,371,133 - 142,421,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366142,379,835 - 142,430,174 (-)NCBIMGSCv36mm8
MGSCv366142,999,467 - 143,049,414 (-)NCBIMGSCv36mm8
Celera6145,483,115 - 145,534,322 (-)NCBICelera
Cytogenetic Map6G2NCBI
cM Map674.04NCBI
GYS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,532,577 - 21,604,847 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,536,107 - 21,604,847 (-)EnsemblGRCh38hg38GRCh38
GRCh371221,689,041 - 21,757,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,580,390 - 21,649,048 (-)NCBINCBI36Build 36hg18NCBI36
Build 341221,580,391 - 21,648,821NCBI
Celera1226,844,519 - 26,913,106 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,463,128 - 21,531,710 (-)NCBIHuRef
CHM1_11221,654,730 - 21,723,356 (-)NCBICHM1_1
T2T-CHM13v2.01221,415,082 - 21,483,766 (-)NCBIT2T-CHM13v2.0
Gys2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,096,063 - 177,137,236 (-)NCBIGRCr8
mRatBN7.24175,365,054 - 175,406,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,365,054 - 175,406,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4181,659,898 - 181,701,068 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,444,169 - 177,485,337 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,064,732 - 176,105,904 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,638,632 - 176,679,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,638,629 - 176,679,815 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04240,856,037 - 240,896,372 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44179,984,036 - 180,018,819 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14180,229,159 - 180,263,943 (-)NCBI
Celera4163,897,690 - 163,941,472 (-)NCBICelera
RH 3.4 Map41028.6RGD
Cytogenetic Map4q44NCBI
Gys2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,178,983 - 17,240,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541317,182,342 - 17,240,180 (-)NCBIChiLan1.0ChiLan1.0
GYS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,197,392 - 75,266,040 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,193,790 - 75,262,438 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,693,285 - 64,761,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,297,131 - 67,365,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,297,131 - 67,365,773 (+)Ensemblpanpan1.1panPan2
GYS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12725,509,833 - 25,558,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2725,509,655 - 25,558,844 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2720,792,441 - 20,848,094 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02725,732,712 - 25,788,382 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2725,732,517 - 25,788,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12725,531,505 - 25,581,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02725,554,947 - 25,604,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02720,968,756 - 21,018,506 (-)NCBIUU_Cfam_GSD_1.0
Gys2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,333,228 - 87,395,940 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,256,437 - 5,309,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,256,185 - 5,309,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GYS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,862,863 - 51,917,757 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1551,862,952 - 51,915,153 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,129,103 - 55,191,552 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GYS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,400,582 - 21,464,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,398,869 - 21,463,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606913,681,409 - 13,742,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gys2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,090,563 - 17,143,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475217,090,741 - 17,145,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gys2
3175 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:151
Interacting mature miRNAs:160
Transcripts:ENSMUST00000032371, ENSMUST00000126939
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
15092047Wsigrme2_mweek six growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092045Wngrme2_mweek nine growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
15092052Wsegrme2_mweek seven growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
15092053Wegrme2_mweek eight growth rate, maternal effect 2 (mouse)6140445726147201498Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
15092060Wfogrme1_mweek four growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
15092061Wfigrme1_mweek five growth rate, maternal effect 1 (mouse)6140445726147201498Mouse
15092058Lgrme2_mlate growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
15092056Mgrme1_mmid growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
MHAa34g10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386142,430,983 - 142,431,096UniSTSGRCm38
MGSCv376142,379,503 - 142,379,616UniSTSGRCm37
Celera6145,491,652 - 145,491,765UniSTS
Cytogenetic Map6G2UniSTS
Whitehead/MRC_RH61369.33UniSTS
Gys2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386142,459,435 - 142,459,506UniSTSGRCm38
MGSCv376142,407,955 - 142,408,026UniSTSGRCm37
Celera6145,520,170 - 145,520,241UniSTS
Cytogenetic Map6G2UniSTS
cM Map6 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000032371   ⟹   ENSMUSP00000032371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6142,368,339 - 142,418,835 (-)Ensembl
GRCm38.p6 Ensembl6142,422,613 - 142,473,109 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126939   ⟹   ENSMUSP00000145213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6142,368,343 - 142,369,345 (-)Ensembl
GRCm38.p6 Ensembl6142,422,617 - 142,423,619 (-)Ensembl
RefSeq Acc Id: NM_001411624   ⟹   NP_001398553
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396142,368,339 - 142,418,827 (-)NCBI
RefSeq Acc Id: NM_145572   ⟹   NP_663547
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396142,368,339 - 142,418,827 (-)NCBI
GRCm386142,422,613 - 142,473,109 (-)NCBI
MGSCv376142,371,133 - 142,421,629 (-)RGD
Celera6145,483,115 - 145,534,322 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011241583   ⟹   XP_011239885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396142,399,620 - 142,418,856 (-)NCBI
GRCm386142,453,894 - 142,473,130 (-)NCBI
Sequence:
RefSeq Acc Id: NP_663547   ⟸   NM_145572
- Peptide Label: isoform 1
- UniProtKB: Q8VCB3 (UniProtKB/Swiss-Prot),   Q3UTY0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011239885   ⟸   XM_011241583
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000032371   ⟸   ENSMUST00000032371
Ensembl Acc Id: ENSMUSP00000145213   ⟸   ENSMUST00000126939
RefSeq Acc Id: NP_001398553   ⟸   NM_001411624
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VCB3-F1-model_v2 AlphaFold Q8VCB3 1-704 view protein structure

Promoters
RGD ID:6839427
Promoter ID:MM_KWN:48147
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_145572
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366142,421,226 - 142,421,726 (-)MPROMDB
RGD ID:6891434
Promoter ID:EPDNEW_M9168
Type:initiation region
Name:Gys2_2
Description:Mus musculus glycogen synthase 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9169  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386142,472,860 - 142,472,920EPDNEW
RGD ID:6891436
Promoter ID:EPDNEW_M9169
Type:multiple initiation site
Name:Gys2_1
Description:Mus musculus glycogen synthase 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9168  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386142,473,098 - 142,473,158EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385254 AgrOrtholog
Ensembl Genes ENSMUSG00000030244 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032371 ENTREZGENE
  ENSMUST00000032371.8 UniProtKB/Swiss-Prot
  ENSMUST00000126939.2 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/Swiss-Prot
InterPro Glycogen_synth UniProtKB/Swiss-Prot
KEGG Report mmu:232493 UniProtKB/Swiss-Prot
MGD MGI:2385254 ENTREZGENE
NCBI Gene 232493 ENTREZGENE
PANTHER GLYCOGEN [STARCH] SYNTHASE, LIVER UniProtKB/Swiss-Prot
  PTHR10176 UniProtKB/Swiss-Prot
Pfam Glycogen_syn UniProtKB/Swiss-Prot
PhenoGen Gys2 PhenoGen
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/Swiss-Prot
UniProt A0A0N4SVR4_MOUSE UniProtKB/TrEMBL
  GYS2_MOUSE UniProtKB/Swiss-Prot
  Q3UTY0 ENTREZGENE
  Q8VCB3 ENTREZGENE
UniProt Secondary Q3UTY0 UniProtKB/Swiss-Prot