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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament-based process
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Accession:GO:0045103 term browser browse the term
Definition:Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins.



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intermediate filament-based process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within ISO MGI:2384719 (PMID:12177195) RGD PMID:12177195 NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589
JBrowse link
G Krt15 keratin 15 TAS RGD PMID:15085952 RGD:1303986 NCBI chr10:85,066,797...85,070,614
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt17 keratin 17 TAS RGD PMID:15085952 RGD:1303986 NCBI chr10:85,178,673...85,183,392
Ensembl chr10:85,178,675...85,183,392
JBrowse link
G Krt24 keratin 24 TAS RGD PMID:15085952 RGD:1303986 NCBI chr10:84,232,163...84,237,299
Ensembl chr10:84,232,164...84,237,299
JBrowse link
G Krt39 keratin 39 TAS RGD PMID:15085952 RGD:1303986 NCBI chr10:84,473,946...84,480,552
Ensembl chr10:84,473,946...84,480,552
JBrowse link
G Krt76 keratin 76 TAS RGD PMID:15085952 RGD:1303986 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496
JBrowse link
G Krt83 keratin 83 TAS RGD PMID:15085952 RGD:1303986 NCBI chr 7:132,604,180...132,610,869
Ensembl chr 7:132,604,128...132,610,799
JBrowse link
G Sync syncoilin, intermediate filament protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:11330864)
GO_Central
RGD
PMID:11330864 GO_REF:0000033 NCBI chr 5:141,631,837...141,656,184
Ensembl chr 5:141,632,367...141,688,659
JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO MGI:1931877 (PMID:12177195) RGD PMID:12177195 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbln bublin coiled coil protein involved_in ISO (PMID:33857431) RGD PMID:33857431 NCBI chr 3:15,674,577...15,677,322
Ensembl chr 3:15,674,580...15,677,374
JBrowse link
G Dst dystonin involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:36,135,657...36,529,617
Ensembl chr 9:36,135,284...36,529,615
JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (MGI:5816446|PMID:20926261) RGD PMID:20926261 MGI:5816446 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159
JBrowse link
G Krt14 keratin 14 involved_in ISS
ISO
GO_REF:0000024
(PMID:11724817)
UniProt
RGD
PMID:11724817 GO_REF:0000024 NCBI chr10:85,137,786...85,142,054
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:135,623,734...135,949,097
Ensembl chr 5:135,623,742...135,945,905
JBrowse link
G Nefh neurofilament heavy chain involved_in
acts_upstream_of_or_within
IGI
ISO
IBA
IEA
PMID:11034913
MGI:97313|MGI:97314 (PMID:10461886)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:10461886 PMID:11034913 GO_REF:0000033 GO_REF:0000118, RGD:8554743 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within
ISO UniProtKB:P16884 (MGI:5553249|PMID:11034913)
MGI:97309|MGI:97314 (PMID:10461886)
RGD PMID:10461886 PMID:11034913 MGI:5553249 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO MGI:97309|MGI:97313 (PMID:10461886) RGD PMID:10461886 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:10852826) RGD PMID:10852826 NCBI chr13:47,309,607...47,357,432
Ensembl chr13:47,309,614...47,357,465
JBrowse link
G Pkp2 plakophilin 2 involved_in ISO
IBA
(PMID:18474624)
GO_REF:0000033
RGD
GO_Central
PMID:18474624 GO_REF:0000033 NCBI chr11:84,661,783...84,727,730
Ensembl chr11:84,661,783...84,727,730
JBrowse link
intermediate filament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:20637808)
ParkinsonsUK-UCL
RGD
PMID:20637808 GO_REF:0000024 NCBI chr 6:121,072,228...121,107,902
Ensembl chr 6:121,074,448...121,107,902
JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO MGI:2671074 (PMID:15037121) RGD PMID:15037121 NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 involved_in ISO
IEA
ISS
(PMID:23902688)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23902688 GO_REF:0000024 GO_REF:0000107 NCBI chr18:55,017,049...55,050,184
Ensembl chr18:55,017,055...55,049,271
JBrowse link
G Dsp desmoplakin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2182575 (PMID:9864371)
GO_Central
RGD
PMID:9864371 GO_REF:0000033 NCBI chr17:26,623,602...26,671,692
Ensembl chr17:26,623,588...26,671,800
JBrowse link
G Dst dystonin involved_in ISO
IBA
(PMID:11751855)
GO_REF:0000033
RGD
GO_Central
PMID:11751855 GO_REF:0000033 NCBI chr 9:36,135,657...36,529,617
Ensembl chr 9:36,135,284...36,529,615
JBrowse link
G Evpl envoplakin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:101,458,227...101,474,778
Ensembl chr10:101,458,216...101,474,763
JBrowse link
G Fam83b family with sequence similarity 83, member B involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 8:77,287,351...77,363,795
Ensembl chr 8:77,287,351...77,363,795
JBrowse link
G Fam83d family with sequence similarity 83, member D involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:147,421,941...147,441,211
Ensembl chr 3:147,421,908...147,441,192
JBrowse link
G Fam83e family with sequence similarity 83, member E involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:96,191,581...96,201,182
Ensembl chr 1:96,191,742...96,201,192
JBrowse link
G Fam83f family with sequence similarity 83, member F involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:112,211,164...112,240,454
Ensembl chr 7:112,211,164...112,240,452
JBrowse link
G Fam83g family with sequence similarity 83, member G involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr10:46,363,029...46,388,030
Ensembl chr10:46,363,051...46,388,019
JBrowse link
G Fam83h family with sequence similarity 83, member H involved_in ISO
IBA
(PMID:23902688)
GO_REF:0000033
RGD
GO_Central
PMID:23902688 GO_REF:0000033 NCBI chr 7:107,716,431...107,724,619
Ensembl chr 7:107,716,431...107,728,672
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha acts_upstream_of_or_within ISO (PMID:14561875) RGD PMID:14561875 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Krt16 keratin 16 acts_upstream_of_or_within ISO (PMID:12445204) RGD PMID:12445204 NCBI chr10:85,168,357...85,171,816
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt18 keratin 18 involved_in ISO
IEA
IBA
(PMID:20346438)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:20346438 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:133,157,486...133,161,162
Ensembl chr 7:133,157,475...133,161,166
JBrowse link
G Krt6c keratin 6c involved_in ISO (PMID:23662636) RGD PMID:23662636 NCBI chr 7:132,799,608...132,804,045
Ensembl chr 7:132,799,616...132,804,045
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
InterPro
TreeGrafter
GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:135,623,734...135,949,097
Ensembl chr 5:135,623,742...135,945,905
JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within ISO MGI:2183246 (PMID:14561875) RGD PMID:14561875 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO MGI:2180135 (PMID:14561875) RGD PMID:14561875 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
JBrowse link
G Plec plectin involved_in IEA
ISO
IBA
GO_REF:0000002
MGI:3721885 (PMID:23836526)
GO_REF:0000118
GO_REF:0000033
InterPro
RGD
TreeGrafter
GO_Central
PMID:23836526 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Ppl periplakin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:10,450,919...10,496,575
Ensembl chr10:10,450,919...10,496,575
JBrowse link
G Prph peripherin acts_upstream_of_or_within IMP
ISO
(PMID:12642616) RGD PMID:12642616 PMID:8575457 RGD:633740 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2388026 (PMID:16365167)
Ensembl
RGD
PMID:16365167 GO_REF:0000107 NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317
JBrowse link
G Synm synemin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:121,333,712...121,363,652
Ensembl chr 1:121,333,720...121,363,652
JBrowse link
G Tor1a torsin family 1, member A involved_in ISO
ISS
(PMID:16361107)
GO_REF:0000024
RGD
UniProt
PMID:16361107 GO_REF:0000024 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691
JBrowse link
intermediate filament organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001416.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:132,758,366...132,762,047 JBrowse link
G AABR07054262.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:138,778,150...138,779,864 JBrowse link
G Agfg1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2182772 (PMID:14724135)
GO_Central
RGD
PMID:14724135 GO_REF:0000033 NCBI chr 9:84,124,845...84,182,615
Ensembl chr 9:84,125,120...84,178,128
JBrowse link
G Agfg1-ps1 ArfGAP with FG repeats 1, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:138,777,896...138,779,912 JBrowse link
G Agfg2 ArfGAP with FG repeats 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr12:19,012,228...19,048,433
Ensembl chr12:19,012,258...19,048,421
JBrowse link
G Bfsp1 beaded filament structural protein 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:6414994|PMID:27559293)
Ensembl
UniProt
RGD
PMID:27559293 GO_REF:0000024 GO_REF:0000107 MGI:6414994 NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337
JBrowse link
G Bfsp2 beaded filament structural protein 2 involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(MGI:6414994|PMID:27559293)
UniProt
TreeGrafter
GO_Central
RGD
PMID:27559293 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:6414994 NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399
JBrowse link
G Des desmin involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000118
(PMID:24200904), (PMID:26724190)
UniProt
TreeGrafter
RGD
PMID:24200904 PMID:26724190 GO_REF:0000024 GO_REF:0000118 NCBI chr 9:76,850,979...76,858,695
Ensembl chr 9:76,850,982...76,858,699
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 involved_in ISO (PMID:10954706) RGD PMID:10954706 NCBI chr 4:5,452,683...5,556,679
Ensembl chr 4:5,452,683...5,556,659
JBrowse link
G Dsp desmoplakin involved_in ISO (MGI:3723417|PMID:16917092) RGD PMID:16917092 MGI:3723417 NCBI chr17:26,623,602...26,671,692
Ensembl chr17:26,623,588...26,671,800
JBrowse link
G Eppk1 epiplakin 1 involved_in ISO (PMID:15671067), (PMID:23398049)
(MGI:3805230|PMID:18285451), (MGI:5805359|PMID:25617501)
RGD PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501 MGI:3805230 MGI:5805359 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159
JBrowse link
G Flg filaggrin acts_upstream_of_or_within ISO (PMID:6170061) RGD PMID:6170061 NCBI chr 2:178,884,793...178,912,986 JBrowse link
G Gfap glial fibrillary acidic protein involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
IBA
(PMID:15732097)
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
MGI:1857176|MGI:98932 (PMID:11487638), (PMID:8692820)
RGD
UniProt
TreeGrafter
GO_Central
PMID:8692820 PMID:11487638 PMID:15732097 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Ka11 type I keratin KA11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,161,424...85,164,737
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Klhl24 kelch-like family member 24 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27889062)
UniProt
Ensembl
RGD
PMID:27889062 GO_REF:0000024 GO_REF:0000107 NCBI chr11:80,843,621...80,877,649
Ensembl chr11:80,846,755...80,877,636
JBrowse link
G Krt1 keratin 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,976,618...132,981,844
Ensembl chr 7:132,976,620...132,981,844
JBrowse link
G Krt10 keratin 10 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:96699 (PMID:24751727)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:24751727 GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,338,695...84,343,279
Ensembl chr10:84,338,706...84,343,701
JBrowse link
G Krt12 keratin 12 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045
JBrowse link
G Krt13 keratin 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,051,887...85,056,099
Ensembl chr10:85,051,889...85,056,084
JBrowse link
G Krt14 keratin 14 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,137,786...85,142,054
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt15 keratin 15 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,066,797...85,070,614
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt16 keratin 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,168,357...85,171,816
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt17 keratin 17 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:1100845|MGI:1333768 (PMID:15601842)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:15601842 GO_REF:0000033 GO_REF:0000118 NCBI chr10:85,178,673...85,183,392
Ensembl chr10:85,178,675...85,183,392
JBrowse link
G Krt19 keratin 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,075,835...85,080,552
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt2 keratin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:4363845 (PMID:24751727)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:24751727 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:132,940,879...132,948,031
Ensembl chr 7:132,940,862...132,947,963
JBrowse link
G Krt20 keratin 20 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
(MGI:3759340|PMID:12857878)
GO_REF:0000024
(PMID:12857878)
Ensembl
TreeGrafter
GO_Central
RGD
UniProt
PMID:12857878 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:3759340 NCBI chr10:84,384,790...84,394,125
Ensembl chr10:84,384,802...84,394,107
JBrowse link
G Krt23 keratin 23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,434,445...84,450,773
Ensembl chr10:84,434,380...84,450,983
JBrowse link
G Krt24 keratin 24 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,232,163...84,237,299
Ensembl chr10:84,232,164...84,237,299
JBrowse link
G Krt25 keratin 25 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:3707007 (PMID:17920809)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:17920809 GO_REF:0000033 GO_REF:0000107 NCBI chr10:84,267,399...84,275,025
Ensembl chr10:84,267,399...84,274,965
JBrowse link
G Krt26 keratin 26 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,280,965...84,295,575
Ensembl chr10:84,281,162...84,292,466
JBrowse link
G Krt27 keratin 27 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,298,684...84,303,967
Ensembl chr10:84,298,508...84,303,967
JBrowse link
G Krt28 keratin 28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,318,352...84,328,693
Ensembl chr10:84,318,543...84,328,643
JBrowse link
G Krt31 keratin 31 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,979,393...84,982,898
Ensembl chr10:84,979,352...84,982,832
JBrowse link
G Krt32 keratin 32 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,013,551...85,020,578
Ensembl chr10:85,013,554...85,020,534
JBrowse link
G Krt33a keratin 33A involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,942,584...84,947,544
Ensembl chr10:84,942,573...84,947,478
JBrowse link
G Krt33b keratin 33B involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,955,838...84,961,673
Ensembl chr10:84,955,841...84,961,673
JBrowse link
G Krt34 keratin 34 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,969,988...84,974,098
Ensembl chr10:84,970,017...84,974,040
JBrowse link
G Krt35 keratin 35 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,026,171...85,029,568
Ensembl chr10:85,026,171...85,029,568
JBrowse link
G Krt36 keratin 36 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,036,379...85,040,003
Ensembl chr10:85,036,594...85,039,959
JBrowse link
G Krt39 keratin 39 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,473,946...84,480,552
Ensembl chr10:84,473,946...84,480,552
JBrowse link
G Krt4 keratin 4 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:133,046,067...133,052,027
Ensembl chr 7:133,046,515...133,052,019
JBrowse link
G Krt40 keratin 40 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:84,496,470...84,502,756
Ensembl chr10:84,496,730...84,502,751
JBrowse link
G Krt42 keratin 42 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:85,185,186...85,246,520
Ensembl chr10:85,185,181...85,192,595
JBrowse link
G Krt5 keratin 5 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,846,132...132,851,861
Ensembl chr 7:132,846,136...132,851,850
JBrowse link
G Krt6c keratin 6c involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,799,608...132,804,045
Ensembl chr 7:132,799,616...132,804,045
JBrowse link
G Krt7 keratin 7 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,528,881...132,545,052
Ensembl chr 7:132,528,895...132,545,052
JBrowse link
G Krt71 keratin 71 involved_in ISO
IBA
(PMID:22592156)
GO_REF:0000033
RGD
GO_Central
PMID:22592156 GO_REF:0000033 NCBI chr 7:132,873,532...132,898,975
Ensembl chr 7:132,873,540...132,882,325
JBrowse link
G Krt72 keratin 72 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,910,379...132,920,844
Ensembl chr 7:132,910,613...132,920,783
JBrowse link
G Krt73 keratin 73 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,927,812...132,936,323
Ensembl chr 7:132,928,256...132,936,280
JBrowse link
G Krt75 keratin 75 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,687,101...132,697,360
Ensembl chr 7:132,688,237...132,697,345
JBrowse link
G Krt76 keratin 76 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496
JBrowse link
G Krt77 keratin 77 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,989,727...133,002,087
Ensembl chr 7:132,989,717...133,002,101
JBrowse link
G Krt78 keratin 78 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,074,193...133,081,536
Ensembl chr 7:133,074,215...133,082,021
JBrowse link
G Krt79 keratin 79 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:133,056,710...133,067,750
Ensembl chr 7:133,056,709...133,067,705
JBrowse link
G Krt8 keratin 8 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:133,124,203...133,131,656
Ensembl chr 7:133,124,203...133,131,728
JBrowse link
G Krt80 keratin 80 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:132,463,216...132,485,134
Ensembl chr 7:132,463,218...132,485,508
JBrowse link
G Krt81 keratin 81 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,577,112...132,582,238
Ensembl chr 7:132,576,492...132,582,170
JBrowse link
G Krt82 keratin 82 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,665,506...132,675,362
Ensembl chr 7:132,665,292...132,675,489
JBrowse link
G Krt83 keratin 83 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,604,180...132,610,869
Ensembl chr 7:132,604,128...132,610,799
JBrowse link
G Krt84 keratin 84 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,649,064...132,656,885
Ensembl chr 7:132,649,061...132,656,874
JBrowse link
G Krt85 keratin 85 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,630,184...132,637,061
Ensembl chr 7:132,630,058...132,637,049
JBrowse link
G Krt86 keratin 86 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,591,489...132,598,142
Ensembl chr 7:132,591,545...132,598,021
JBrowse link
G Krt87 keratin 87 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,547,388...132,555,005
Ensembl chr 7:132,548,141...132,554,978
JBrowse link
G Krt88 keratin 88 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:132,566,087...132,571,946
Ensembl chr 7:132,561,724...132,571,944
JBrowse link
G Krt9 keratin 9 involved_in ISO
IBA
IEA
ISS
(PMID:10218578)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:10218578 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:85,120,962...85,127,228
Ensembl chr10:85,122,424...85,127,228
JBrowse link
G Krt90 keratin 90 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,677,994...132,686,634
Ensembl chr 7:132,677,751...132,686,759
JBrowse link
G LOC100365213 keratin 6A-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118
G LOC102553726 keratin, type II cytoskeletal 6A-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:132,787,470...132,791,649
Ensembl chr 7:132,787,265...132,791,703
JBrowse link
G LOC120093742 keratin, type II cytoskeletal 6A-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:132,813,038...132,817,010
Ensembl chr 7:132,812,625...132,817,043
JBrowse link
G Mtm1 myotubularin 1 involved_in ISO
ISS
(PMID:21135508)
GO_REF:0000024
RGD
UniProt
PMID:21135508 GO_REF:0000024 NCBI chr 6:488,923...506,882
Ensembl chr 6:488,969...506,860
JBrowse link
G Nefl neurofilament light chain involved_in
acts_upstream_of_or_within
ISO (PMID:12432080), (PMID:17052987)
(PMID:2121744), (PMID:7946341)
RGD PMID:2121744 PMID:7946341 PMID:12432080 PMID:17052987 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link
G Plec plectin involved_in IEA
ISO
GO_REF:0000107
MGI:3721885|MGI:3799314|MGI:3799315 (PMID:18490514), (PMID:18541706), (PMID:24487589), (PMID:26487297), (PMID:26519478)
Ensembl
RGD
PMID:18490514 PMID:18541706 PMID:24487589 PMID:26487297 PMID:26519478 GO_REF:0000107 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Prph peripherin involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861186 (PMID:11171399)
Ensembl
RGD
PMID:11171399 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Tchh trichohyalin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:12853460)
GO_Central
RGD
PMID:12853460 GO_REF:0000033 NCBI chr 2:179,103,660...179,112,014
Ensembl chr 2:179,109,609...179,110,985
Ensembl chr 2:179,109,609...179,110,985
JBrowse link
G Vim vimentin involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
ISS
GO_REF:0000107
MGI:95697 (PMID:11487638)
GO_REF:0000033
(MGI:6414994|PMID:27559293)
GO_REF:0000024
Ensembl
RGD
GO_Central
UniProt
PMID:11487638 PMID:27559293 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6414994 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
JBrowse link
intermediate filament polymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Krt5 keratin 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:2179054|PMID:11408584)
UniProt
Ensembl
RGD
PMID:11408584 GO_REF:0000024 GO_REF:0000107 MGI:2179054 NCBI chr 7:132,846,132...132,851,861
Ensembl chr 7:132,846,136...132,851,850
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light chain IDA RGD PMID:10362553 RGD:9698446 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link
G Nefm neurofilament medium chain IDA RGD PMID:10362553 RGD:9698446 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy chain involved_in ISO (PMID:7536898) RGD PMID:7536898 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
JBrowse link
G Nefl neurofilament light chain involved_in IDA
IBA
ISO
GO_REF:0000033
(PMID:12432080), (PMID:15857389)
GO_Central
RGD
PMID:12432080 PMID:15857389 PMID:7721944 GO_REF:0000033, RGD:9743935 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link
G Nefm neurofilament medium chain involved_in IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:7721944 GO_REF:0000033 GO_REF:0000118, RGD:9743935 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16236762)
Ensembl
RGD
PMID:16236762 GO_REF:0000107 NCBI chr 2:29,263,888...29,560,595
Ensembl chr 2:29,263,886...29,560,672
JBrowse link
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (MGI:5439211|PMID:22912588) RGD PMID:22912588 MGI:5439211 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:2061715) RGD PMID:2061715 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97313 (PMID:10350642)
Ensembl
RGD
PMID:10350642 GO_REF:0000107 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15208636)
Ensembl
RGD
PMID:15208636 GO_REF:0000107 NCBI chr10:53,505,628...53,582,025
Ensembl chr10:53,516,491...53,570,907
JBrowse link
G Nefh neurofilament heavy chain acts_upstream_of_or_within ISO MGI:2387787|MGI:97313|MGI:97314 (PMID:10461886), (PMID:20633607) RGD PMID:10461886 PMID:20633607 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
JBrowse link
G Nefl neurofilament light chain acts_upstream_of_or_within ISO MGI:2180095|MGI:96568|MGI:97309|MGI:97314|MGI:98351 (PMID:10350642), (PMID:10461886), (PMID:11343650), (PMID:11487626), (PMID:14561875), (PMID:15132161), (PMID:16920084), (PMID:9398473) RGD PMID:9398473 PMID:10350642 PMID:10461886 PMID:11343650 PMID:11487626 More... NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link
G Nefm neurofilament medium chain acts_upstream_of_or_within ISO MGI:2180135|MGI:97309|MGI:97313 (PMID:10461886), (PMID:9566972) RGD PMID:9566972 PMID:10461886 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:3574016|MGI:97313 (PMID:11343650)
UniProt
RGD
PMID:11343650 GO_REF:0000024 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857091 (PMID:11493023)
Ensembl
RGD
PMID:11493023 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin involved_in IDA
IBA
IEA
PMID:12686602
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
PMID:12686602 GO_REF:0000033 GO_REF:0000118, RGD:633505 NCBI chr 2:173,437,867...173,447,777
Ensembl chr 2:173,438,734...173,447,777
JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ina internexin neuronal intermediate filament protein, alpha involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Nefh neurofilament heavy chain involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
JBrowse link
G Nefl neurofilament light chain involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      intermediate filament-based process 107
        intermediate filament cytoskeleton organization + 106
paths to the root