ONTOLOGY REPORT - ANNOTATIONS
Term: intermediate filament-based process
Accession: GO:0045103
browse the term
Definition: Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins.
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Gfap
glial fibrillary acidic protein
ISO
MGI:2384719 (MGI:2384242|PMID:12177195)
RGD
PMID:12177195
MGI:2384242
NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
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Kb23
type II keratin 23
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr 7:143,134,980...143,141,659
Ensembl chr 7:143,135,074...143,141,589
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Krt15
keratin 15
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr10:88,046,803...88,050,622
Ensembl chr10:88,046,803...88,050,622
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Krt17
keratin 17
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr10:88,158,993...88,163,712
Ensembl chr10:88,118,001...88,163,723
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Krt24
keratin 24
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr10:87,190,184...87,195,075
Ensembl chr10:87,189,934...87,195,075
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Krt39
keratin 39
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr10:87,430,850...87,437,455
Ensembl chr10:87,430,850...87,437,455
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Krt76
keratin 76
TAS
RGD
PMID:15085952
RGD:1303986
NCBI chr 7:143,488,668...143,497,108
Ensembl chr 7:143,488,684...143,497,108
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Sync
syncoilin, intermediate filament protein
involved_in
ISO IBA
(MGI:2157666|PMID:11330864) PMID:21873635
RGD
PMID:11330864 , PMID:21873635 , PMID:21873635
MGI:2157666 , RGD:13792537 , RGD:13792537
NCBI chr 5:147,476,136...147,500,193
Ensembl chr 5:147,476,221...147,498,902
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Vim
vimentin
ISO
MGI:1931877 (MGI:2384242|PMID:12177195)
RGD
PMID:12177195
MGI:2384242
NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
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AABR07034767.1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
Ensembl chr11:88,912,599...88,972,176
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Eppk1
epiplakin 1
ISO
(MGI:5816446|PMID:20926261)
RGD
PMID:20926261
MGI:5816446
NCBI chr 7:117,163,383...117,173,741
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Krt14
keratin 14
involved_in
ISO ISS
(PMID:11724817) GO_REF:0000024
RGD UniProt
PMID:11724817
GO_REF:0000024
NCBI chr10:88,118,029...88,122,233
Ensembl chr10:88,055,823...88,122,233
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Nefh
neurofilament heavy
involved_in
IGI ISO
PMID:11034913 MGI:97313|MGI:97314 (MGI:1342909|PMID:10461886)
RGD
PMID:10461886 , PMID:11034913 , PMID:11034913
MGI:1342909 , RGD:8554743 , RGD:8554743
NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
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Nefl
neurofilament light
ISO
MGI:97309|MGI:97314|UniProtKB:P16884 (MGI:1342909|PMID:10461886), (MGI:5553249|PMID:11034913)
RGD
PMID:10461886 PMID:11034913
MGI:1342909 MGI:5553249
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
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Nefm
neurofilament medium
ISO
MGI:97309|MGI:97313 (MGI:1342909|PMID:10461886)
RGD
PMID:10461886
MGI:1342909
NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
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Pkp1
plakophilin 1
involved_in
ISO IBA
(PMID:10852826) PMID:21873635
RGD
PMID:10852826 , PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr13:52,705,174...52,753,089
Ensembl chr13:52,705,174...52,752,997
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Pkp2
plakophilin 2
involved_in
ISO
(PMID:18474624)
RGD
PMID:18474624
NCBI chr11:88,912,163...88,972,213
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Atxn3
ataxin 3
involved_in
ISO ISS
(PMID:20637808) GO_REF:0000024
RGD ParkinsonsUK-UCL
PMID:20637808
GO_REF:0000024
NCBI chr 6:125,817,420...125,853,461
Ensembl chr 6:125,819,640...125,853,461
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Bfsp2
beaded filament structural protein 2
ISO
MGI:2671074 (MGI:2673300|PMID:15037121)
RGD
PMID:15037121
MGI:2673300
NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
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Csnk1a1
casein kinase 1, alpha 1
involved_in
ISO ISS
(PMID:23902688) GO_REF:0000024
RGD UniProt
PMID:23902688
GO_REF:0000024
NCBI chr18:56,887,722...56,910,610
Ensembl chr18:56,887,354...56,918,345
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Dsp
desmoplakin
involved_in
ISO IBA
MGI:2182575 (MGI:1327099|PMID:9864371) PMID:21873635
RGD
PMID:9864371 , PMID:21873635 , PMID:21873635
MGI:1327099 , RGD:13792537 , RGD:13792537
NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
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Dst
dystonin
involved_in
ISO IBA
(PMID:11751855) PMID:21873635
RGD
PMID:11751855 , PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr 9:37,902,336...38,296,961
Ensembl chr 9:37,902,303...38,196,273
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Evpl
envoplakin
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr10:105,100,538...105,116,802
Ensembl chr10:105,100,336...105,116,916
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Fam83h
family with sequence similarity 83, member H
involved_in
ISO IBA
(PMID:23902688) PMID:21873635
RGD
PMID:23902688 , PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr 7:117,062,748...117,070,936
Ensembl chr 7:117,062,692...117,070,936
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Ina
internexin neuronal intermediate filament protein, alpha
ISO
(MGI:2679157|PMID:14561875)
RGD
PMID:14561875
MGI:2679157
NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
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Kb15
type II keratin Kb15
involved_in
ISO
(PMID:23662636)
RGD
PMID:23662636
NCBI chr 7:143,208,034...143,217,771
Ensembl chr 7:143,208,527...143,217,535
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Krt16
keratin 16
ISO
(MGI:2447093|PMID:12445204)
RGD
PMID:12445204
MGI:2447093
NCBI chr10:88,149,210...88,152,167
Ensembl chr10:88,149,345...88,152,064
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Krt18
keratin 18
involved_in
ISO
(PMID:20346438)
RGD
PMID:20346438
NCBI chr 7:143,629,455...143,633,131
Ensembl chr 7:143,629,455...143,633,131
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LOC680875
similar to dystonin isoform 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr 7:117,180,653...117,187,739
Ensembl chr 7:117,180,812...117,187,367
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Macf1
microtubule-actin crosslinking factor 1
involved_in
IEA IBA
GO_REF:0000002 PMID:21873635
InterPro
PMID:21873635 , PMID:21873635
GO_REF:0000002, RGD:13792537 , RGD:13792537
NCBI chr 5:141,039,455...141,363,524
Ensembl chr 5:141,039,468...141,363,524
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Nefh
neurofilament heavy
ISO
MGI:2183246 (MGI:2679157|PMID:14561875)
RGD
PMID:14561875
MGI:2679157
NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
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Nefm
neurofilament medium
ISO
MGI:2180135 (MGI:2679157|PMID:14561875)
RGD
PMID:14561875
MGI:2679157
NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
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Plec
plectin
involved_in
IEA IBA
GO_REF:0000002 PMID:21873635
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
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Ppl
periplakin
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635 , PMID:21873635
RGD:13792537 , RGD:13792537
NCBI chr10:10,644,572...10,690,223
Ensembl chr10:10,644,572...10,690,223
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Prph
peripherin
involved_in
IMP IEA ISO
GO_REF:0000002 (MGI:2653435|PMID:12642616)
InterPro RGD
PMID:12642616 , PMID:8575457
GO_REF:0000002 MGI:2653435 , RGD:633740
NCBI chr 7:140,742,406...140,746,197
Ensembl chr 7:140,742,418...140,746,197
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Raf1
Raf-1 proto-oncogene, serine/threonine kinase
ISO
MGI:2388026 (MGI:3612236|PMID:16365167)
RGD
PMID:16365167
MGI:3612236
NCBI chr 4:147,532,040...147,592,769
Ensembl chr 4:147,532,042...147,592,699
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Synm
synemin
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 1:128,692,112...128,722,048
Ensembl chr 1:128,692,112...128,722,048
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Tor1a
torsin family 1, member A
involved_in
ISO ISS
(PMID:16361107) GO_REF:0000024
RGD UniProt
PMID:16361107
GO_REF:0000024
NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
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Agfg1
ArfGAP with FG repeats 1
ISO
MGI:2182772 (MGI:3040020|PMID:14724135)
RGD
PMID:14724135
MGI:3040020
NCBI chr 9:88,607,508...88,663,486
Ensembl chr 9:88,607,508...88,662,224
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Bfsp1
beaded filament structural protein 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:6414994|PMID:27559293)
UniProt Ensembl RGD
PMID:27559293
GO_REF:0000024 GO_REF:0000107 MGI:6414994
NCBI chr 3:137,935,345...137,992,652
Ensembl chr 3:137,935,345...137,969,658
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Bfsp2
beaded filament structural protein 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:6414994|PMID:27559293)
UniProt RGD
PMID:27559293
GO_REF:0000024 MGI:6414994
NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
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Des
desmin
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:24200904), (PMID:26724190) GO_REF:0000024
Ensembl RGD UniProt
PMID:24200904 PMID:26724190
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:82,556,574...82,564,288
Ensembl chr 9:82,556,573...82,564,294
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Dnajb6
DnaJ heat shock protein family (Hsp40) member B6
involved_in
ISO
(PMID:10954706)
RGD
PMID:10954706
NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
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Dsp
desmoplakin
ISO
(MGI:3723417|PMID:16917092)
RGD
PMID:16917092
MGI:3723417
NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
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Eppk1
epiplakin 1
involved_in
ISO
(PMID:15671067), (PMID:23398049) (MGI:3805230|PMID:18285451), (MGI:5805359|PMID:25617501)
RGD
PMID:15671067 PMID:18285451 PMID:23398049 PMID:25617501
MGI:3805230 MGI:5805359
NCBI chr 7:117,163,383...117,173,741
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Flg
filaggrin
ISO
(MGI:5521493|PMID:6170061)
RGD
PMID:6170061
MGI:5521493
NCBI chr 2:193,565,401...193,574,297
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Gfap
glial fibrillary acidic protein
involved_in
ISO ISS
(PMID:15732097) GO_REF:0000024 MGI:1857176|MGI:98932 (MGI:1889059|PMID:8692820), (MGI:3719550|PMID:11487638)
RGD UniProt
PMID:8692820 PMID:11487638 PMID:15732097
GO_REF:0000024 MGI:1889059 MGI:3719550
NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
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Kb15
type II keratin Kb15
ISO
MGI:1333768|MGI:96691 (MGI:3525934|PMID:15601842)
RGD
PMID:15601842
MGI:3525934
NCBI chr 7:143,208,034...143,217,771
Ensembl chr 7:143,208,527...143,217,535
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Klhl24
kelch-like family member 24
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:27889062) GO_REF:0000024
Ensembl RGD UniProt
PMID:27889062
GO_REF:0000024 GO_REF:0000107
NCBI chr11:84,613,101...84,643,674
Ensembl chr11:84,615,760...84,633,504
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Krt10
keratin 10
ISO
MGI:96699 (MGI:5603985|PMID:24751727)
RGD
PMID:24751727
MGI:5603985
NCBI chr10:87,296,445...87,301,307
Ensembl chr10:87,296,451...87,300,736
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Krt17
keratin 17
ISO
MGI:1100845|MGI:1333768 (MGI:3525934|PMID:15601842)
RGD
PMID:15601842
MGI:3525934
NCBI chr10:88,158,993...88,163,712
Ensembl chr10:88,118,001...88,163,723
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Krt2
keratin 2
involved_in
IEA ISO
GO_REF:0000107 MGI:4363845 (MGI:5603985|PMID:24751727)
Ensembl RGD
PMID:24751727
GO_REF:0000107 MGI:5603985
NCBI chr 7:143,412,858...143,420,463
Ensembl chr 7:143,412,858...143,420,027
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Krt20
keratin 20
involved_in
ISO ISS IEA
(PMID:12857878) GO_REF:0000024 GO_REF:0000107 (MGI:3759340|PMID:12857878)
RGD UniProt Ensembl
PMID:12857878
GO_REF:0000024 GO_REF:0000107 MGI:3759340
NCBI chr10:87,342,514...87,351,045
Ensembl chr10:87,342,619...87,351,045
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Krt25
keratin 25
ISO
MGI:3707007 (MGI:3770737|PMID:17920809)
RGD
PMID:17920809
MGI:3770737
NCBI chr10:87,225,361...87,238,659
Ensembl chr10:87,225,343...87,232,723
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Krt71
keratin 71
involved_in
ISO
(PMID:22592156)
RGD
PMID:22592156
NCBI chr 7:143,345,201...143,371,346
Ensembl chr 7:143,345,201...143,353,925
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Krt9
keratin 9
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 (PMID:10218578)
Ensembl UniProt RGD
PMID:10218578
GO_REF:0000024 GO_REF:0000107
NCBI chr10:88,102,519...88,107,232
Ensembl chr10:88,102,519...88,107,232
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Mtm1
myotubularin 1
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:21135508) GO_REF:0000024
Ensembl RGD UniProt
PMID:21135508
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
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Nefl
neurofilament light
involved_in
ISO
(PMID:12432080), (PMID:17052987) (MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
RGD
PMID:2121744 PMID:7946341 PMID:12432080 PMID:17052987
MGI:1096547 MGI:2182115
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
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Shh
sonic hedgehog signaling molecule
involved_in
IEA ISO
GO_REF:0000107 MGI:1861186 (MGI:1929969|PMID:11171399)
Ensembl RGD
PMID:11171399
GO_REF:0000107 MGI:1929969
NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
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Tchh
trichohyalin
involved_in
ISO IBA
(MGI:2678962|PMID:12853460) PMID:21873635
RGD
PMID:12853460 , PMID:21873635 , PMID:21873635
MGI:2678962 , RGD:13792537 , RGD:13792537
NCBI chr 2:193,778,022...193,784,793
Ensembl chr 2:193,778,042...193,783,761
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Vim
vimentin
involved_in
IEA ISS ISO
GO_REF:0000107 GO_REF:0000024 MGI:95697 (MGI:3719550|PMID:11487638), (MGI:6414994|PMID:27559293)
Ensembl UniProt RGD
PMID:11487638 PMID:27559293
GO_REF:0000024 GO_REF:0000107 MGI:3719550 MGI:6414994
NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
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Nefl
neurofilament light
IDA
RGD
PMID:10362553
RGD:9698446
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
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Nefm
neurofilament medium
IDA
RGD
PMID:10362553
RGD:9698446
NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
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Nefh
neurofilament heavy
involved_in
ISO
(PMID:7536898)
RGD
PMID:7536898
NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
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Nefl
neurofilament light
involved_in
IDA ISO
(PMID:12432080), (PMID:15857389)
RGD
PMID:12432080 PMID:15857389 , PMID:7721944
RGD:9743935
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
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Nefm
neurofilament medium
involved_in
IDA IEA
GO_REF:0000002
InterPro
PMID:7721944
GO_REF:0000002, RGD:9743935
NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
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Arhgef28
Rho guanine nucleotide exchange factor 28
ISO
(MGI:3619625|PMID:16236762)
RGD
PMID:16236762
MGI:3619625
NCBI chr 2:25,738,514...26,011,429
Ensembl chr 2:25,738,514...26,011,429
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Atp8a2
ATPase phospholipid transporting 8A2
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
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Cln8
CLN8, transmembrane ER and ERGIC protein
ISO
MGI:1856959 (MGI:3709684|PMID:2061715)
RGD
PMID:2061715
MGI:3709684
NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
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Ina
internexin neuronal intermediate filament protein, alpha
involved_in
IEA ISO
GO_REF:0000107 MGI:97313 (MGI:1339419|PMID:10350642)
Ensembl RGD
PMID:10350642
GO_REF:0000107 MGI:1339419
NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
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Ndel1
nudE neurodevelopment protein 1-like 1
ISO
(MGI:3047464|PMID:15208636)
RGD
PMID:15208636
MGI:3047464
NCBI chr10:55,398,919...55,456,654
Ensembl chr10:55,411,901...55,444,861
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Nefh
neurofilament heavy
ISO
MGI:2387787|MGI:97313|MGI:97314 (MGI:1342909|PMID:10461886), (MGI:4836441|PMID:20633607)
RGD
PMID:10461886 PMID:20633607
MGI:1342909 MGI:4836441
NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
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Nefl
neurofilament light
ISO
MGI:2180095|MGI:96568|MGI:97309|MGI:97314|MGI:98351 (MGI:1100197|PMID:9398473), (MGI:1339419|PMID:10350642), (MGI:1342909|PMID:10461886), (MGI:1347434|PMID:15132161), (MGI:1934092|PMID:11343650), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
RGD
PMID:9398473 PMID:10350642 PMID:10461886 PMID:11343650 PMID:11487626 PMID:14561875 PMID:15132161 PMID:16920084
MGI:1100197 MGI:1339419 MGI:1342909 MGI:1347434 MGI:1934092 MGI:2148377 MGI:2679157 MGI:3664358
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
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Nefm
neurofilament medium
ISO
MGI:2180135|MGI:97309|MGI:97313 (MGI:1203441|PMID:9566972), (MGI:1342909|PMID:10461886)
RGD
PMID:9566972 PMID:10461886
MGI:1203441 MGI:1342909
NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
G
Sod1
superoxide dismutase 1
involved_in
ISS ISO
GO_REF:0000024 MGI:3574016|MGI:97313 (MGI:1934092|PMID:11343650)
UniProt RGD
PMID:11343650
GO_REF:0000024 MGI:1934092
NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
G
Vps54
VPS54 subunit of GARP complex
involved_in
IEA ISO
GO_REF:0000107 MGI:1857091 (MGI:2149279|PMID:11493023)
Ensembl RGD
PMID:11493023
GO_REF:0000107 MGI:2149279
NCBI chr14:106,153,407...106,207,715
Ensembl chr14:106,153,575...106,207,658
G
Nes
nestin
involved_in
IDA IBA
PMID:12686602 PMID:21873635
UniProt GO_Central
PMID:12686602 , PMID:21873635 , PMID:12686602 , PMID:21873635
RGD:633505 , RGD:13792537 , RGD:633505 , RGD:13792537
NCBI chr 2:187,343,109...187,352,972
Ensembl chr 2:187,344,056...187,352,969
G
Ina
internexin neuronal intermediate filament protein, alpha
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
G
Nefh
neurofilament heavy
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
G
Nefl
neurofilament light
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all