Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic cranial skeleton morphogenesis
go back to main search page
Accession:GO:0048701 term browser browse the term
Definition:The process in which the anatomical structures of the cranial skeleton are generated and organized during the embryonic phase.
Synonyms:exact_synonym: embryonic cranium morphogenesis


show annotations for term's descendants           Sort by:
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2610005L07Rik RIKEN cDNA 2610005L07 gene acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:9268572) MGI PMID:9268572 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Dlx1as distal-less homeobox 1, antisense acts_upstream_of_or_within IMP (PMID:23415800) MGI PMID:23415800 NCBI chr 2:71,360,982...71,368,235
Ensembl chr 2:71,346,798...71,368,252 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within IMP (PMID:7590232) MGI PMID:7590232 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915 		JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981 		JBrowse link
G Eif4a3l2 eukaryotic translation initiation factor 4A3 like 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:116,527,132...116,529,563
Ensembl chr 6:116,528,102...116,529,463 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9106663) MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IGI
IMP		 (PMID:17525797) MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within IMP (PMID:15797856) MGI PMID:15797856 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21377456) MGI PMID:21377456 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Irx5 Iroquois homeobox 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:93,084,424...93,088,084
Ensembl chr 8:93,084,253...93,102,914 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within IMP (PMID:19763162) MGI PMID:19763162 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:11311163) MGI PMID:11311163 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within IMP (PMID:23349049) MGI PMID:23349049 NCBI chr 4:44,524,748...44,710,694
Ensembl chr 4:44,524,757...44,710,487 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP
IBA		 (MGI:894516|PMID:9226440) UniProt
GO_Central		 PMID:9226440 GO_REF:0000033 MGI:894516 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:7758948)
(PMID:9729491)		 MGI PMID:7758948 PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within IGI (PMID:9729491) MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Setd2 SET domain containing 2 acts_upstream_of_or_within IMP (PMID:20133625) MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,361,665...110,447,701 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six2 sine oculis-related homeobox 2 acts_upstream_of_or_within IMP (PMID:20515681) MGI PMID:20515681 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Six4 sine oculis-related homeobox 4 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Slc39a1 solute carrier family 39 (zinc transporter), member 1 acts_upstream_of_or_within IGI
IMP		 (PMID:16652366) MGI PMID:16652366 NCBI chr 3:90,155,512...90,160,923
Ensembl chr 3:90,155,479...90,160,919 		JBrowse link
G Slc39a3 solute carrier family 39 (zinc transporter), member 3 acts_upstream_of_or_within IGI (PMID:16652366) MGI PMID:16652366 NCBI chr10:80,864,374...80,873,169
Ensembl chr10:80,864,372...80,873,260 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (PMID:15190012) MGI PMID:15190012 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 acts_upstream_of_or_within IMP (PMID:15728667) MGI PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in
acts_upstream_of_or_within		 IMP (MGI:80519|PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:16806156) MGI PMID:16806156 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in
acts_upstream_of_or_within		 IMP
IGI
ISO		 (MGI:1100098|PMID:8988167)
(PMID:15030764)		 BHF-UCL
MGI		 PMID:8988167 PMID:15030764 GO_REF:0000119 MGI:1100098 MGI:4834177 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (PMID:16998816)
(PMID:16054034)		 MGI PMID:16054034 PMID:16998816 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IGI (PMID:27395007) MGI PMID:27395007 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within IMP
IGI		 (PMID:27395007) MGI PMID:27395007 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:27395007) MGI PMID:27395007 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (PMID:20589884) MGI PMID:20589884 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IMP (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 acts_upstream_of_or_within IMP (PMID:16020517) MGI PMID:16020517 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO RGD
MGI		 PMID:11002343 GO_REF:0000096 MGI:4417868 RGD:1579866 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISO RGD
MGI		 PMID:11002343 GO_REF:0000096 MGI:4417868 RGD:1579866 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674) MGI PMID:19286674 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IMP (PMID:16079159) MGI PMID:16079159 NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9409679) MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP (PMID:16221728) MGI PMID:16221728 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (MGI:3777712|PMID:14695376) UniProt PMID:14695376 MGI:3777712 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within IMP (PMID:17420000) MGI PMID:17420000 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IMP (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 acts_upstream_of_or_within IMP (PMID:16020517) MGI PMID:16020517 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:19763162) MGI
GO_Central		 PMID:19763162 GO_REF:0000033 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Tbx1 T-box 1 involved_in ISS
ISO		 (MGI:1095819|PMID:9268629) UniProt
MGI		 PMID:9268629 GO_REF:0000119 MGI:1095819 MGI:4834177 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28576
    developmental process 7377
      anatomical structure development 6849
        cranial skeletal system development 86
          embryonic cranial skeleton morphogenesis 55
            embryonic neurocranium morphogenesis 10
            embryonic viscerocranium morphogenesis 10
Path 2
Term Annotations click to browse term
  biological_process 28576
    developmental process 7377
      anatomical structure development 6849
        multicellular organism development 5442
          embryo development 1382
            embryo development ending in birth or egg hatching 910
              chordate embryonic development 891
                embryonic skeletal system development 151
                  embryonic skeletal system morphogenesis 111
                    embryonic cranial skeleton morphogenesis 55
                      embryonic neurocranium morphogenesis 10
                      embryonic viscerocranium morphogenesis 10
paths to the root