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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic skeletal system development
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Accession:GO:0048706 term browser browse the term
Definition:The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.
Synonyms:exact_synonym: embryonic skeletal development



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embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861779 (MGI:71660|PMID:7885474)
Ensembl
RGD
PMID:7885474 GO_REF:0000107 MGI:71660 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826
JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:18553566) RGD PMID:18553566 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:3029622|PMID:14966286)
UniProt
RGD
PMID:14966286 GO_REF:0000024 MGI:3029622 NCBI chr 1:196,401,857...196,435,541
Ensembl chr 1:196,401,857...196,435,541
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3838429|PMID:19247431) RGD PMID:19247431 MGI:3838429 NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522
JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857826|MGI:94902 (MGI:87771|PMID:9187081)
Ensembl
RGD
PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO MGI:1857828|MGI:94901 (MGI:87771|PMID:9187081) RGD PMID:9187081 MGI:87771 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO MGI:3512139 (MGI:3613100|PMID:16387292) RGD PMID:16387292 MGI:3613100 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131
JBrowse link
G Ednra endothelin receptor type A involved_in ISO MGI:103580 (MGI:5688194|PMID:19017795) RGD PMID:19017795 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Etl4 enhancer trap locus 4 involved_in ISO (MGI:3614233|PMID:16204209) RGD PMID:16204209 MGI:3614233 NCBI chr17:82,841,075...83,304,868
Ensembl chr17:82,495,041...83,304,715
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941) RGD PMID:17504941 MGI:3710451 NCBI chr17:4,482,014...4,485,155 JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO
IEA
MGI:105923 (MGI:5688194|PMID:19017795)
GO_REF:0000107
RGD
Ensembl
PMID:19017795 GO_REF:0000107 MGI:5688194 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hoxa2 homeobox A2 involved_in ISO (MGI:5644573|PMID:25889273) RGD PMID:25889273 MGI:5644573 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:96207 (MGI:67616|PMID:7913519) RGD PMID:7913519 MGI:67616 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:96186|MGI:96196 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within ISO MGI:96187|MGI:96197 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 4:81,304,918...81,313,184
Ensembl chr 4:81,306,407...81,308,850
JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797), (MGI:85243|PMID:9013929) RGD PMID:8625797 PMID:9013929 PMID:17626057 MGI:3720535 MGI:78984 MGI:85243 NCBI chr 4:81,323,235...81,329,344
Ensembl chr 4:81,323,382...81,326,358
JBrowse link
G Hoxb5 homeo box B5 acts_upstream_of_or_within ISO MGI:96177|MGI:96196 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr10:81,269,372...81,271,580
Ensembl chr10:81,269,372...81,271,580
JBrowse link
G Hoxb6 homeo box B6 acts_upstream_of_or_within ISO MGI:2151485|MGI:96178|MGI:96197 (MGI:3720535|PMID:17626057), (MGI:70296|PMID:7828847) RGD PMID:7828847 PMID:17626057 MGI:3720535 MGI:70296 NCBI chr10:81,258,726...81,267,458
Ensembl chr10:81,265,056...81,267,449
JBrowse link
G Hoxb9 homeo box B9 acts_upstream_of_or_within ISO MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (MGI:1859107|PMID:10885747), (MGI:3720535|PMID:17626057), (MGI:85243|PMID:9013929) RGD PMID:9013929 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:85243 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818
JBrowse link
G Hoxc5 homeo box C5 acts_upstream_of_or_within ISO MGI:96177|MGI:96186 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:134,150,988...134,154,410
Ensembl chr 7:134,150,988...134,154,410
JBrowse link
G Hoxc6 homeo box C6 acts_upstream_of_or_within ISO MGI:96178|MGI:96187 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392
JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO MGI:96180|MGI:96190|MGI:96210 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492
JBrowse link
G Hoxd1 homeo box D1 acts_upstream_of_or_within ISO MGI:3616015 (MGI:2137767|PMID:11511348) RGD PMID:11511348 MGI:2137767 NCBI chr 3:59,665,629...59,667,769
Ensembl chr 3:59,665,629...59,667,769
JBrowse link
G Hoxd9 homeo box D9 acts_upstream_of_or_within ISO MGI:2150414|MGI:96180|MGI:96190|MGI:96199 (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797) RGD PMID:8625797 PMID:17626057 MGI:3720535 MGI:78984 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754
JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 acts_upstream_of_or_within ISO MGI:5056371 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr13:82,170,079...82,190,018
Ensembl chr13:82,173,179...82,190,017
JBrowse link
G Mbtd1 mbt domain containing 1 acts_upstream_of_or_within ISO MGI:4940055 (MGI:4939865|PMID:21252303) RGD PMID:21252303 MGI:4939865 NCBI chr10:78,839,140...78,895,413
Ensembl chr10:78,839,036...78,893,720
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4887578 (MGI:4868517|PMID:21045211)
Ensembl
RGD
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:1857926|MGI:1931319 (MGI:1343724|PMID:10449756), (MGI:1347483|PMID:10572046) RGD PMID:10449756 PMID:10572046 MGI:1343724 MGI:1347483 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061
JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) RGD PMID:10080184 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831 (MGI:79520|PMID:8631261) RGD PMID:8631261 MGI:79520 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:2155612 (MGI:2151355|PMID:11566859) RGD PMID:11566859 MGI:2151355 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:88174 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
RGD PMID:18519639 MGI:3795695 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:3604178|PMID:15994349) RGD PMID:15994349 MGI:3604178 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Scx scleraxis bHLH transcription factor acts_upstream_of_or_within
involved_in
ISO (PMID:7743923)
(MGI:72077|PMID:7743923)
RGD PMID:7743923 MGI:72077 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:95655 (MGI:3710451|PMID:17504941)
Ensembl
RGD
PMID:17504941 GO_REF:0000107 MGI:3710451 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Slc35d1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO MGI:3774133 (MGI:3771453|PMID:17952091) RGD PMID:17952091 MGI:3771453 NCBI chr 5:117,928,628...117,981,289
Ensembl chr 5:117,934,352...117,981,311
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS
GO_REF:0000104
GO_REF:0000107
UniProtKB:Q8CFG0 (MGI:3771123|PMID:18213582)
GO_REF:0000024
UniProt
Ensembl
RGD
PMID:18213582 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 MGI:3771123 NCBI chr 5:6,362,896...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Sulf2 sulfatase 2 involved_in ISO UniProtKB:Q8CFG0 (MGI:3771123|PMID:18213582) RGD PMID:18213582 MGI:3771123 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415
JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 acts_upstream_of_or_within ISO MGI:1857317 (MGI:3758514|PMID:17151244) RGD PMID:17151244 MGI:3758514 NCBI chr14:66,873,467...66,919,737
Ensembl chr14:66,873,459...66,919,741
JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO MGI:1857760 (MGI:64493|PMID:8293872) RGD PMID:8293872 MGI:64493 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Ucma upper zone of growth plate and cartilage matrix associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:73,293,977...73,303,728
Ensembl chr17:73,293,978...73,303,611
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) RGD PMID:9757009 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:19918918) RGD PMID:19918918 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Xylt1 xylosyltransferase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5544658|PMID:24161523)
UniProt
RGD
PMID:24161523 GO_REF:0000024 MGI:5544658 NCBI chr 1:171,643,925...171,929,774
Ensembl chr 1:171,643,925...171,926,783
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:1095762|PMID:9268572)
Ensembl
RGD
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)
Ensembl
RGD
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
ISS
(PMID:24360810)
GO_REF:0000024
RGD
UniProt
PMID:24360810 GO_REF:0000024 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) RGD PMID:7874170 PMID:7987400 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397|MGI:98297 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,482,014...4,485,155 JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) RGD PMID:22581230 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318
JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101900 (MGI:3771253|PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388
JBrowse link
G Nipbl NIPBL, cohesin loading factor acts_upstream_of_or_within ISO MGI:4332250 (MGI:4367301|PMID:19763162) RGD PMID:19763162 MGI:4367301 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:58,763,334...58,945,719
Ensembl chr 5:58,765,036...58,944,326
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IBA
ISS
ISO
IEA
PMID:21873635
GO_REF:0000024
(MGI:894516|PMID:9226440)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:9226440 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:894516, RGD:13792537 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:14,132,511...14,168,535
Ensembl chr 3:14,094,004...14,168,535
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104685|MGI:98872 (MGI:3042355|PMID:15030764)
Ensembl
RGD
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO MGI:2147269|MGI:3625131 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 2:175,703,413...175,709,063
Ensembl chr 2:175,703,441...175,709,058
JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO MGI:1353474 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 7:8,676,845...8,682,846
Ensembl chr 7:8,676,759...8,685,149
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)
UniProt
RGD
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO MGI:1856015 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:186,576,347...186,687,748
Ensembl chr 2:186,576,676...186,687,663
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:80519|PMID:8622766)
MGI:1888387 (MGI:80520|PMID:8622765)
UniProt
RGD
PMID:8622765 PMID:8622766 GO_REF:0000024 MGI:80519 MGI:80520 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO MGI:2680164 (MGI:3701721|PMID:16806156) RGD PMID:16806156 MGI:3701721 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:2678274|PMID:12975342) RGD PMID:12975342 MGI:2678274 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
ISO (PMID:8988166), (PMID:8988167)
(MGI:1100098|PMID:8988167)
MGI:99829 (MGI:3042355|PMID:15030764)
RGD PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:99829 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:1856821|MGI:3526437 (MGI:3588895|PMID:16054034), (MGI:3696935|PMID:16998816) RGD PMID:16054034 PMID:16998816 MGI:3588895 MGI:3696935 NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035
JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1917550 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090|MGI:99604 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:66,404,622...66,427,772
Ensembl chr  X:66,404,760...66,428,387
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,590,478...161,632,514
Ensembl chr 4:161,590,479...161,632,149
JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO MGI:2682061 (MGI:4946896|PMID:21185280) RGD PMID:21185280 MGI:4946896 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3695832|PMID:17191253) RGD PMID:17191253 MGI:3695832 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:18565096) RGD PMID:18565096 NCBI chr 3:154,240,395...154,252,690
Ensembl chr 3:154,240,391...154,252,690
JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1856035|MGI:1856036 RGD MGI:48782 NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103302|MGI:1857137 (MGI:1270933|PMID:9664686)
Ensembl
RGD
PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1934010|MGI:88180 (MGI:1270933|PMID:9664686) RGD PMID:9664686 MGI:1270933 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO (PMID:16752401) RGD PMID:16752401 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96193|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO MGI:96172|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783
JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within ISO MGI:2658730 (MGI:3836537|PMID:18772348) RGD PMID:18772348 MGI:3836537 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Nog noggin involved_in ISO
IEA
(PMID:16151340)
GO_REF:0000107
RGD
Ensembl
PMID:16151340 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3626291 (MGI:3805084|PMID:18514492)
GO_REF:0000107
RGD
Ensembl
PMID:18514492 GO_REF:0000107 MGI:3805084 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in ISO
IEA
UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216)
GO_REF:0000107
RGD
Ensembl
PMID:21262216 GO_REF:0000107 MGI:4950000 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:108359 (MGI:1314705|PMID:9847249), (MGI:3604843|PMID:15728667)
RGD PMID:9847249 PMID:15728667 PMID:21873635 MGI:1314705 MGI:3604843, RGD:13792537 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220
JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO MGI:108359 (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:11641221 PMID:15728667 MGI:2151109 MGI:3604843 NCBI chr 2:195,231,197...195,241,609
Ensembl chr 2:195,231,197...195,241,609
JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO MGI:104621|MGI:1277097|MGI:1856069 (MGI:1314705|PMID:9847249), (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:9847249 PMID:11641221 PMID:15728667 MGI:1314705 MGI:2151109 MGI:3604843 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO MGI:3840841 (MGI:3840399|PMID:19270745) RGD PMID:19270745 MGI:3840399 NCBI chr 6:26,425,017...26,514,899
Ensembl chr 6:26,425,954...26,507,477
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2680670 (MGI:1930428|PMID:11238884)
Ensembl
RGD
PMID:11238884 GO_REF:0000107 MGI:1930428 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 involved_in ISO (PMID:12051741) RGD PMID:12051741 NCBI chr 8:45,740,298...46,057,322
Ensembl chr 8:45,740,298...46,057,320
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:23910462) RGD PMID:23910462 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Flvcr1 FLVCR heme transporter 1 acts_upstream_of_or_within ISO MGI:5474636 (MGI:5471193|PMID:23187127) RGD PMID:23187127 MGI:5471193 NCBI chr13:102,586,263...102,608,647
Ensembl chr13:102,586,257...102,608,661
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (MGI:1339313|PMID:9409679) RGD PMID:9409679 MGI:1339313 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO
GO_REF:0000024
(MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)
UniProt
RGD
PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1277234 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO MGI:1857496|MGI:1857726 (MGI:76246|PMID:7555726), (MGI:76955|PMID:7555718) RGD PMID:7555718 PMID:7555726 MGI:76246 MGI:76955 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO MGI:102778 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667)
RGD PMID:9441667 PMID:21873635 MGI:1195045, RGD:13792537 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218
JBrowse link
G Hoxa4 homeo box A4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2150391|MGI:96185|MGI:96208 (MGI:67413|PMID:7918106), (MGI:74948|PMID:7628700)
RGD PMID:7628700 PMID:7918106 PMID:21873635 MGI:67413 MGI:74948, RGD:13792537 NCBI chr 4:81,289,677...81,291,685
Ensembl chr 4:81,289,682...81,291,685
JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397|MGI:3723623 (MGI:1203259|PMID:9603431), (MGI:3723390|PMID:17417799), (MGI:63693|PMID:7901120) RGD PMID:7901120 PMID:9603431 PMID:17417799 MGI:1203259 MGI:3723390 MGI:63693 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234
JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within ISO MGI:2150392 (MGI:67413|PMID:7918106) RGD PMID:7918106 MGI:67413 NCBI chr 4:81,304,918...81,313,184
Ensembl chr 4:81,306,407...81,308,850
JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:96188 (MGI:1313067|PMID:9784603)
GO_REF:0000107
RGD
Ensembl
PMID:9784603 GO_REF:0000107 MGI:1313067 NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:81,314,625...81,317,659
JBrowse link
G Hoxa9 homeobox A9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:81,323,235...81,329,344
Ensembl chr 4:81,323,382...81,326,358
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:81,317,927...81,320,223
Ensembl chr10:81,318,026...81,320,192
JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2151773|MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (MGI:1195045|PMID:9441667), (MGI:1859107|PMID:10885747)
RGD PMID:9441667 PMID:10885747 PMID:21873635 MGI:1195045 MGI:1859107, RGD:13792537 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107
JBrowse link
G Hoxb4 homeo box B4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:74948|PMID:7628700)
RGD PMID:7628700 PMID:10885747 PMID:21873635 MGI:1859107 MGI:74948, RGD:13792537 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
JBrowse link
G Hoxb5 homeo box B5 acts_upstream_of_or_within ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:70296|PMID:7828847) RGD PMID:7828847 PMID:10885747 MGI:1859107 MGI:70296 NCBI chr10:81,269,372...81,271,580
Ensembl chr10:81,269,372...81,271,580
JBrowse link
G Hoxb6 homeo box B6 acts_upstream_of_or_within ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:81,258,726...81,267,458
Ensembl chr10:81,265,056...81,267,449
JBrowse link
G Hoxb7 homeo box B7 acts_upstream_of_or_within ISO MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (MGI:1313067|PMID:9784603), (MGI:1859107|PMID:10885747) RGD PMID:9784603 PMID:10885747 MGI:1313067 MGI:1859107 NCBI chr10:81,252,616...81,256,034
Ensembl chr10:81,252,553...81,256,034
JBrowse link
G Hoxb8 homeo box B8 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190 (MGI:1349283|PMID:10559485), (MGI:1859107|PMID:10885747)
Ensembl
RGD
PMID:10559485 PMID:10885747 GO_REF:0000107 MGI:1349283 MGI:1859107 NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,248,887...81,250,638
JBrowse link
G Hoxb9 homeo box B9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818
JBrowse link
G Hoxc4 homeo box C4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133
JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO MGI:2150685 (MGI:73980|PMID:7547473) RGD PMID:7547473 MGI:73980 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492
JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO MGI:96210 (MGI:1350864|PMID:10642795) RGD PMID:10642795 MGI:1350864 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725
JBrowse link
G Hoxd3 homeo box D3 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:1857959|MGI:96175 (MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
GO_REF:0000107
RGD
Ensembl
PMID:7910549 PMID:7913519 PMID:21873635 GO_REF:0000107 MGI:63793 MGI:67616, RGD:13792537 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282
JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2151488|MGI:96176 (MGI:72992|PMID:7750651), (MGI:74948|PMID:7628700)
RGD PMID:7628700 PMID:7750651 PMID:21873635 MGI:72992 MGI:74948, RGD:13792537 NCBI chr 3:59,614,464...59,634,042
Ensembl chr 3:59,614,464...59,631,528
JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:96202 (MGI:1350864|PMID:10642795)
GO_REF:0000107
RGD
Ensembl
PMID:10642795 PMID:21873635 GO_REF:0000107 MGI:1350864, RGD:13792537 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (MGI:1349497|PMID:10579729) RGD PMID:10579729 MGI:1349497 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594
JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO MGI:2155446 (MGI:1312999|PMID:9799236) RGD PMID:9799236 MGI:1312999 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5551355|PMID:24052814)
GO_REF:0000107
CAFA
RGD
Ensembl
PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613
JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2683274|MGI:3573783 (MGI:3763871|PMID:17927973) RGD PMID:17927973 MGI:3763871 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) RGD PMID:17360777 MGI:3790402 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219 (MGI:1861090|PMID:10929709) RGD PMID:10929709 MGI:1861090 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:3033240 (MGI:3513962|PMID:15175245)
UniProt
RGD
PMID:15175245 GO_REF:0000024 MGI:3513962 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:88174 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 MGI:1306737 MGI:1321048 MGI:2149056 MGI:73363 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916) RGD PMID:9729491 PMID:9876178 PMID:11532916 MGI:1306737 MGI:1321048 MGI:2149056 NCBI chr 3:14,132,511...14,168,535
Ensembl chr 3:14,094,004...14,168,535
JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768|MGI:3695425 (MGI:3692344|PMID:16751105), (MGI:3695004|PMID:16960803) RGD PMID:16751105 PMID:16960803 MGI:3692344 MGI:3695004 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:96174 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO MGI:1856015|MGI:95729 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:186,576,347...186,687,748
Ensembl chr 2:186,576,676...186,687,663
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:3038818 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO MGI:3701350 (MGI:3701031|PMID:16818445) RGD PMID:16818445 MGI:3701031 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)
Ensembl
RGD
PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (MGI:1339313|PMID:9409679) RGD PMID:9409679 MGI:1339313 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2385711 (MGI:3608156|PMID:16221728)
GO_REF:0000107
RGD
Ensembl
PMID:16221728 GO_REF:0000107 MGI:3608156 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3777712|PMID:14695376)
UniProt
RGD
PMID:14695376 GO_REF:0000024 MGI:3777712 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4332250 (MGI:4367301|PMID:19763162)
RGD PMID:19763162 PMID:21873635 MGI:4367301, RGD:13792537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISO
ISS
(PMID:14585638)
GO_REF:0000024
RGD
UniProt
PMID:14585638 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19896
    multicellular organismal process 9259
      multicellular organism development 5242
        system development 4503
          skeletal system development 588
            embryonic skeletal system development 145
              embryonic skeletal joint development + 16
              embryonic skeletal system morphogenesis + 107
Path 2
Term Annotations click to browse term
  biological_process 19896
    developmental process 7021
      anatomical structure development 6456
        multicellular organism development 5242
          embryo development 1373
            embryo development ending in birth or egg hatching 889
              chordate embryonic development 872
                embryonic skeletal system development 145
                  embryonic skeletal joint development + 16
                  embryonic skeletal system morphogenesis + 107
paths to the root