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mesodermal cell differentiation - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:mesodermal cell differentiation
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Accession:GO:0048333 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires the specialized features of a mesoderm cell.
Synonyms:exact_synonym: mesoderm cell differentiation

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mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) RGD PMID:22556407 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432|MGI:88180 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17624332)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17624332 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Itga3 integrin subunit alpha 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:79,990,160...80,022,206
Ensembl chr10:79,990,161...80,022,118 		JBrowse link
G Itga8 integrin subunit alpha 8 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr17:75,304,004...75,501,510
Ensembl chr17:75,304,008...75,501,510 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Itgb4 integrin subunit beta 4 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:101,206,657...101,243,012
Ensembl chr10:101,206,665...101,243,012 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA		 MGI:5448754|MGI:5448825 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO
IEA		 (PMID:23856522)
GO_REF:0000107		 RGD
Ensembl		 PMID:23856522 GO_REF:0000107 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 (PMID:14511481)
GO_REF:0000107		 RGD
Ensembl		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1857254 (PMID:15677567), (PMID:18550854), (PMID:19182774)
GO_REF:0000107		 RGD
Ensembl		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA
ISS		 (PMID:10021330)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10021330 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432 (PMID:11124112)
GO_REF:0000107		 RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA		 MGI:3606185 (PMID:28893950)
GO_REF:0000107		 RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of_or_within ISO
IEA		 MGI:109452 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1919200 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:7657163)
GO_REF:0000107		 RGD
Ensembl		 PMID:7657163 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:17785448) RGD PMID:17785448 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Hoxa11 homeobox A11 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17785448)		 UniProt
RGD		 PMID:17785448 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 MGI:2447721 (PMID:9490412)
GO_REF:0000107		 RGD
Ensembl		 PMID:9490412 GO_REF:0000107 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:9106663) RGD PMID:9106663 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:1857489 (PMID:9126297)
GO_REF:0000107		 RGD
Ensembl		 PMID:9126297 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Mir150 microRNA 150 involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 1:95,605,024...95,605,108
Ensembl chr 1:95,605,024...95,605,108 		JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 4:157,523,679...157,523,747 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO
IEA		 (PMID:20559569)
GO_REF:0000107		 RGD
Ensembl		 PMID:20559569 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:95522 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1338938 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1347470 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      cellular developmental process 4838
        cell differentiation 4837
          mesodermal cell differentiation 37
            axial mesodermal cell differentiation + 1
            hemangioblast cell differentiation 1
            intermediate mesodermal cell differentiation + 1
            lateral mesodermal cell differentiation + 4
            mesodermal cell fate commitment + 18
            negative regulation of mesodermal cell differentiation + 3
            paraxial mesodermal cell differentiation + 2
            positive regulation of mesodermal cell differentiation + 4
            regulation of mesodermal cell differentiation + 10
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          embryo development 1381
            embryonic morphogenesis 708
              gastrulation 216
                formation of primary germ layer 142
                  mesoderm formation 83
                    mesodermal cell differentiation 37
                      axial mesodermal cell differentiation + 1
                      hemangioblast cell differentiation 1
                      intermediate mesodermal cell differentiation + 1
                      lateral mesodermal cell differentiation + 4
                      mesodermal cell fate commitment + 18
                      negative regulation of mesodermal cell differentiation + 3
                      paraxial mesodermal cell differentiation + 2
                      positive regulation of mesodermal cell differentiation + 4
                      regulation of mesodermal cell differentiation + 10
paths to the root