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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic morphogenesis
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Accession:GO:0048598 term browser browse the term
Definition:The process in which anatomical structures are generated and organized during the embryonic phase. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.
Synonyms:exact_synonym: embryonic anatomical structure morphogenesis
 alt_id: GO:0048828


show annotations for term's descendants           Sort by:
embryonic morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:2176835|MGI:3041440 (PMID:15716346)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716346 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:2158390|MGI:2176835 (PMID:15716346)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716346 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G C9h2orf49 similar to human chromosome 2 open reading frame 49 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:52,863,565...52,874,234
Ensembl chr 9:45,371,430...45,382,120 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:95655 (PMID:17504941)
GO_REF:0000107		 RGD
Ensembl		 PMID:17504941 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 acts_upstream_of_or_within ISO MGI:4360072 (PMID:19701191) RGD PMID:19701191 NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:89,790,644...89,817,906 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect ISO
IEA		 (PMID:10926768)
GO_REF:0000107		 RGD
Ensembl		 PMID:10926768 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Flrt3 fibronectin leucine rich transmembrane protein 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18448090)		 UniProt
Ensembl
RGD		 PMID:18448090 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:148,448,115...148,461,458
Ensembl chr 3:127,994,226...128,007,841 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:7596436)		 UniProt
RGD		 PMID:7596436 GO_REF:0000024 NCBI chr12:12,333,050...12,504,750
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:1926387|MGI:3711070 (PMID:17504941) RGD PMID:17504941 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443|MGI:2386265 (PMID:9136932), (PMID:9136933) RGD PMID:9136932 PMID:9136933 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:8387379)
GO_REF:0000107		 RGD
Ensembl		 PMID:8387379 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hnf1b HNF1 homeobox B IDA RGD PMID:12860991 RGD:1599302 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:9165122)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9165122 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,184,442...94,206,851
Ensembl chr 9:86,742,102...86,755,108 		JBrowse link
G Msx3 msh homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:204,268,688...204,271,881
Ensembl chr 1:194,839,041...194,841,969 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:1,387,360...1,509,218
Ensembl chr18:1,115,905...1,235,571 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:45,407,823...45,502,773
Ensembl chr 6:39,679,082...39,774,031 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1857796 (PMID:16492970), (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:16492970 PMID:17881493 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3605739 (PMID:16141225)
GO_REF:0000107		 RGD
Ensembl		 PMID:16141225 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in ISO
IEA		 (PMID:20178780)
GO_REF:0000107		 RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:138,167,444...138,188,155
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1344407 (PMID:16598713) RGD PMID:16598713 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1344313 (PMID:16598713)
GO_REF:0000107		 RGD
Ensembl		 PMID:16598713 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
anterior neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp3 caspase 3 acts_upstream_of_or_within ISO
IEA		 MGI:5056374 (PMID:21515572)
GO_REF:0000107		 RGD
Ensembl		 PMID:21515572 GO_REF:0000107 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO
IEA		 (PMID:17286298)
GO_REF:0000107		 RGD
Ensembl		 PMID:17286298 GO_REF:0000107 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA		 MGI:5056365 (PMID:21515572)
GO_REF:0000107		 RGD
Ensembl		 PMID:21515572 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like acts_upstream_of_or_within ISO
IEA		 MGI:4124253|MGI:4128888 (PMID:26787558)
GO_REF:0000107		 RGD
Ensembl		 PMID:26787558 GO_REF:0000107 NCBI chr20:13,337,399...13,443,080
Ensembl chr20:13,339,692...13,443,665 		JBrowse link
anterior neuropore closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) RGD PMID:17565372 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,429,578...19,519,587 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:8622765) RGD PMID:8622765 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
apoptotic process involved in embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1197519 (PMID:15967824)
GO_REF:0000107		 RGD
Ensembl		 PMID:15967824 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:99702 (PMID:15967824) RGD PMID:15967824 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1933835|MGI:2158470 (PMID:16245338)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245338 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (PMID:19363478) RGD PMID:19363478 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:19936227)
GO_REF:0000107		 RGD
Ensembl		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO
IEA		 MGI:5558098 (PMID:24302887)
GO_REF:0000107		 RGD
Ensembl		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO
IEA		 (PMID:35175278)
GO_REF:0000107		 RGD
Ensembl		 PMID:35175278 GO_REF:0000107 NCBI chr 7:8,712,720...8,731,910
Ensembl chr 7:8,061,953...8,081,142 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (PMID:11138008), (PMID:11322776), (PMID:12121736), (PMID:15537665), (PMID:17050716), (PMID:23217710), (PMID:7610888), (PMID:8790740), (PMID:9039475)
GO_REF:0000107		 RGD
Ensembl		 PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:16,710,980...16,813,427 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3850171 (PMID:19414487), (PMID:19423712)
GO_REF:0000107		 RGD
Ensembl		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:143,084,030...143,130,948 		JBrowse link
G Clrn2 clarin 2 involved_in ISO
IEA		 (PMID:33496845)
GO_REF:0000107		 RGD
Ensembl		 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:65,656,550...65,666,193 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA		 (PMID:35235570)
GO_REF:0000107		 RGD
Ensembl		 PMID:35235570 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO
IEA		 MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417)
GO_REF:0000107		 RGD
Ensembl		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:33,984,689...33,998,094 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO
IEA		 MGI:3055797|MGI:3718054 (PMID:15905332), (PMID:17876667), (PMID:23217710)
GO_REF:0000107		 RGD
Ensembl		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,632,362...6,642,532 		JBrowse link
G Myo3a myosin IIIA involved_in ISO MGI:2448580 (PMID:26754646) RGD PMID:26754646 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB involved_in ISO MGI:2183924 (PMID:26754646) RGD PMID:26754646 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736), (PMID:17050716)
GO_REF:0000107		 RGD
Ensembl		 PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,403,069...100,420,598 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA		 MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (PMID:10978835), (PMID:11124469), (PMID:15537665), (PMID:16887306), (PMID:23217710)
GO_REF:0000107		 RGD
Ensembl		 PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4433578 (PMID:24334608)		 GO_Central
Ensembl
RGD		 PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Pls1 plastin 1 involved_in ISO
IEA		 (PMID:25124451)
GO_REF:0000107		 RGD
Ensembl		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:96,317,849...96,385,195 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:29961578)		 UniProt
RGD		 PMID:29961578 GO_REF:0000024 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) RGD PMID:27269051 NCBI chr17:40,751,771...40,975,611
Ensembl chr17:40,323,867...40,548,092 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857872 (PMID:10464373), (PMID:10466888)		 UniProt
Ensembl
RGD		 PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007)
GO_REF:0000107
(PMID:21165971)		 RGD
Ensembl		 PMID:18849963 PMID:21165971 PMID:30801007 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134 		JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO
IEA		 MGI:2153816 (PMID:30801007)
GO_REF:0000107		 RGD
Ensembl		 PMID:30801007 GO_REF:0000107 NCBI chr 8:51,604,974...51,676,745
Ensembl chr 8:42,707,962...42,779,707 		JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2685697 (PMID:30380417)		 GO_Central
Ensembl
RGD		 PMID:30380417 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:8,075,137...8,083,642 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:110,506,248...110,562,474 		JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4432119 (PMID:27117407)		 GO_Central
Ensembl
RGD		 PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857546 (PMID:9230313)
GO_REF:0000107		 RGD
Ensembl		 PMID:9230313 GO_REF:0000107 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO
IEA		 MGI:2448472 (PMID:11287184)
GO_REF:0000107		 RGD
Ensembl		 PMID:11287184 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 (PMID:14511481)
GO_REF:0000107		 RGD
Ensembl		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
branching involved in labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adm adrenomedullin acts_upstream_of_or_within ISO MGI:2176598 (PMID:16981008) RGD PMID:16981008 NCBI chr 1:174,164,178...174,182,372
Ensembl chr 1:164,745,466...164,747,654 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (PMID:9435295) RGD PMID:9435295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3583769 (PMID:23610556) RGD PMID:23610556 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Gcm1 glial cells missing transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2183479 (PMID:10888880)
GO_REF:0000107		 RGD
Ensembl		 PMID:10888880 GO_REF:0000107 NCBI chr 8:87,805,993...87,819,229
Ensembl chr 8:78,925,687...78,938,924 		JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2677457 (PMID:11369229)
GO_REF:0000107		 RGD
Ensembl		 PMID:11369229 GO_REF:0000107 NCBI chr10:101,380,354...101,448,138
Ensembl chr10:100,869,718...100,949,309 		JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within ISO
IEA		 MGI:1857199 (PMID:12842419)
GO_REF:0000107		 RGD
Ensembl		 PMID:12842419 GO_REF:0000107 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO
IEA		 MGI:4331862 (PMID:21606200)
GO_REF:0000107		 RGD
Ensembl		 PMID:21606200 GO_REF:0000107 NCBI chr10:101,549,911...101,585,466
Ensembl chr10:101,051,408...101,086,525 		JBrowse link
G Rspo3 R-spondin 3 acts_upstream_of_or_within ISO
IEA		 MGI:3695687 (PMID:16963017)
GO_REF:0000107		 RGD
Ensembl		 PMID:16963017 GO_REF:0000107 NCBI chr 1:30,112,529...30,197,267
Ensembl chr 1:28,283,914...28,367,061 		JBrowse link
G Socs3 suppressor of cytokine signaling 3 acts_upstream_of_or_within ISO MGI:2180861 (PMID:11481489) RGD PMID:11481489 NCBI chr10:103,692,579...103,695,975
Ensembl chr10:103,193,537...103,197,787 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO
IEA		 MGI:3709554 (PMID:17174946)
GO_REF:0000107		 RGD
Ensembl		 PMID:17174946 GO_REF:0000107 NCBI chr 3:126,685,017...126,697,957
Ensembl chr 3:106,231,444...106,244,119 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4456438 (PMID:30236446)
GO_REF:0000107		 RGD
Ensembl		 PMID:30236446 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO
IEA		 MGI:2656627 (PMID:12676095)
GO_REF:0000107		 RGD
Ensembl		 PMID:12676095 GO_REF:0000107 NCBI chr  X:113,778,990...113,837,846
Ensembl chr  X:108,984,022...109,041,272 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA		 MGI:107405 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Gpc3 glypican 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1201414 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr13:95,188,091...95,191,488
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:15142971)
GO_REF:0000107		 RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315 (PMID:15142971) RGD PMID:15142971 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISO
IEA		 (PMID:23063620)
GO_REF:0000107		 RGD
Ensembl		 PMID:23063620 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2387829 (PMID:17151016)
GO_REF:0000107		 RGD
Ensembl		 PMID:17151016 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 MGI:3717121 (PMID:21146513)
GO_REF:0000107		 RGD
Ensembl		 PMID:21146513 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:2150346 (PMID:10421635)
GO_REF:0000107		 RGD
Ensembl		 PMID:10421635 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
chorio-allantoic fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO
IEA		 UniProtKB:P23359 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO
IEA		 UniProtKB:P49003 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO MGI:2446577 (PMID:12446788) RGD PMID:12446788 NCBI chr 2:237,222,730...237,225,689
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within ISO MGI:2151092 (PMID:10021343) RGD PMID:10021343 NCBI chr 4:6,010,081...6,232,052
Ensembl chr 4:5,452,683...5,556,659 		JBrowse link
G Erf Ets2 repressor factor acts_upstream_of_or_within ISO MGI:3719472 (PMID:17502352) RGD PMID:17502352 NCBI chr 1:89,957,760...89,966,213
Ensembl chr 1:80,829,935...80,838,388 		JBrowse link
G Itga4 integrin subunit alpha 4 acts_upstream_of_or_within ISO MGI:1857206 (PMID:7539359) RGD PMID:7539359 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:64,163,085...64,233,715 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:98504 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:1857452|MGI:2153830 (PMID:7530222), (PMID:7539357) RGD PMID:7530222 PMID:7539357 NCBI chr 2:206,723,050...206,742,783
Ensembl chr 2:204,038,114...204,057,958 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:2387443 (PMID:11543617) RGD PMID:11543617 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within ISO MGI:3050540 (PMID:15226444) RGD PMID:15226444 NCBI chr 6:104,663,396...104,669,815
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO
IEA		 (PMID:17609112)
GO_REF:0000107
GO_REF:0000104		 RGD
Ensembl
UniProt		 PMID:17609112 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915838 (PMID:18606138)
GO_REF:0000107		 RGD
Ensembl		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:70,122,474...70,132,756 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:106613 (PMID:16116426)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (PMID:19008950) RGD PMID:19008950 NCBI chr11:93,869,834...93,887,013
Ensembl chr11:80,366,117...80,382,462 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:17433286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:87,561,326...87,565,334 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17395647) RGD PMID:17395647 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:20643356)
GO_REF:0000107		 RGD
Ensembl		 PMID:20643356 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hpn hepsin involved_in ISS
ISO		 GO_REF:0000024
(PMID:20683358)		 UniProt
RGD		 PMID:20683358 GO_REF:0000024 NCBI chr 1:95,464,468...95,480,169
Ensembl chr 1:86,337,087...86,352,811 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Myo3a myosin IIIA involved_in ISO (PMID:26754646) RGD PMID:26754646 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) RGD PMID:26754646 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21798896)		 Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21798896)		 Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107		 RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:1857673 (PMID:16916509)		 UniProt
RGD		 PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P70323 (PMID:18231833)		 UniProt
RGD		 PMID:18231833 GO_REF:0000024 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:75,858,646...75,859,923 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO
IEA		 MGI:3640803 (PMID:20704721)
GO_REF:0000107		 RGD
Ensembl		 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:14,351,202...14,418,494 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2655195 (PMID:12874121)
GO_REF:0000107		 RGD
Ensembl		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:2385468|MGI:3841145 (PMID:20346939)		 UniProt
Ensembl
RGD		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:P62515 (PMID:18231833)
MGI:2179136 (PMID:17825816)		 UniProt
RGD		 PMID:17825816 PMID:18231833 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO
IEA		 (PMID:10575115)
GO_REF:0000107		 RGD
Ensembl		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1857617|MGI:2135272 (PMID:17433286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA		 UniProtKB:Q6AZT7 (PMID:18371931)
GO_REF:0000107		 RGD
Ensembl		 PMID:18371931 GO_REF:0000107 NCBI chr 8:113,500,708...113,541,179
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:106613 (PMID:16571627)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2135272|MGI:2429760|MGI:94941 (PMID:16571627)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:106613|MGI:1857642 (PMID:16571627), (PMID:17229766)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 PMID:17229766 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within ISO MGI:3578538 (PMID:18701545) RGD PMID:18701545 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:108078|MGI:1860298 (PMID:18257070)
GO_REF:0000107		 RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1862038 (PMID:10932191)
GO_REF:0000107		 RGD
Ensembl		 PMID:10932191 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Gjb6 gap junction protein, beta 6 acts_upstream_of_or_within ISO MGI:2447863 (PMID:12490528) RGD PMID:12490528 NCBI chr15:35,400,147...35,410,649
Ensembl chr15:31,284,419...31,294,582 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179191 (PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685)		 UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:95456 (PMID:25446535)
GO_REF:0000107		 RGD
Ensembl		 PMID:25446535 GO_REF:0000107 NCBI chr 3:110,264,460...110,291,926
Ensembl chr 3:89,797,880...89,836,973 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:1335079 (PMID:25446535)
GO_REF:0000107		 RGD
Ensembl		 PMID:25446535 GO_REF:0000107 NCBI chr11:48,491,057...48,507,843
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120|MGI:98297 (PMID:16647303), (PMID:16647304)
GO_REF:0000107		 RGD
Ensembl		 PMID:16647303 PMID:16647304 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:19767740), (PMID:21935430), (PMID:23806618)		 UniProt
RGD		 PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) RGD PMID:17565372 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,429,578...19,519,587 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO
IEA		 (PMID:23850456)
GO_REF:0000107		 RGD
Ensembl		 PMID:23850456 GO_REF:0000107 NCBI chr13:89,310,897...89,403,856
Ensembl chr13:86,778,500...86,871,615 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) RGD PMID:19000668 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (PMID:15385160) RGD PMID:15385160 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA		 (PMID:23806618)
GO_REF:0000107		 RGD
Ensembl		 PMID:23806618 GO_REF:0000107 NCBI chr  X:31,647,000...31,687,768
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:15013802) RGD PMID:15013802 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Zfp281 zinc finger protein 281 involved_in ISO (PMID:21915945) RGD PMID:21915945 NCBI chr13:48,096,103...48,104,265
Ensembl chr13:48,037,286...48,104,888 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1857654 (PMID:10049573)
GO_REF:0000107		 RGD
Ensembl		 PMID:10049573 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (PMID:18056999) RGD PMID:18056999 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:22022403) RGD PMID:22022403 NCBI chr17:33,044,446...33,051,259
Ensembl chr17:32,836,777...32,842,176 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:18832390) RGD PMID:18832390 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:28778798) RGD PMID:28778798 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA		 MGI:2682066 (PMID:28778798)
GO_REF:0000107		 RGD
Ensembl		 PMID:28778798 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321) RGD PMID:18985738 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:1306784 (PMID:18653562)
GO_REF:0000107		 RGD
Ensembl		 PMID:18653562 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (PMID:17584888) RGD PMID:17584888 NCBI chr 7:135,419,864...135,450,513
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:98372 (PMID:17584888)
GO_REF:0000107		 RGD
Ensembl		 PMID:17584888 GO_REF:0000107 NCBI chr 3:78,219,421...78,272,318
Ensembl chr 3:57,812,075...57,860,342 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:15459098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15459098 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:9811866) RGD PMID:9811866 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857515 (PMID:18436818) RGD PMID:18436818 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO MGI:3526861 (PMID:17143286) RGD PMID:17143286 NCBI chr19:2,152,961...2,312,140
Ensembl chr19:2,148,458...2,304,272 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857828 (PMID:7590232)
GO_REF:0000107		 RGD
Ensembl		 PMID:7590232 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
IEA
ISS		 (PMID:24360810)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24360810 GO_REF:0000024 GO_REF:0000107 NCBI chr10:105,047,567...105,057,561
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO
IEA		 (PMID:7874170), (PMID:7987400)
GO_REF:0000107		 RGD
Ensembl		 PMID:7874170 PMID:7987400 GO_REF:0000107 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:9106663) RGD PMID:9106663 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397|MGI:98297 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA		 MGI:3043361 (PMID:15797856)
GO_REF:0000107		 RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA		 MGI:4942413 (PMID:21377456)
GO_REF:0000107		 RGD
Ensembl		 PMID:21377456 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA		 MGI:4458412 (PMID:23469164)
GO_REF:0000107		 RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO
IEA		 (PMID:22581230)
GO_REF:0000107		 RGD
Ensembl		 PMID:22581230 GO_REF:0000107 NCBI chr19:30,812,033...30,816,885
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA		 MGI:1276107 (PMID:18022611)
GO_REF:0000107		 RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA		 MGI:101900 (PMID:18022611)
GO_REF:0000107		 RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:36,109,265...36,353,252
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Nipbl NIPBL, cohesin loading factor acts_upstream_of_or_within ISO
IEA		 MGI:4332250 (PMID:19763162)
GO_REF:0000107		 RGD
Ensembl		 PMID:19763162 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:2158732 (PMID:11311163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (PMID:23349049) RGD PMID:23349049 NCBI chr 5:63,554,784...63,741,380
Ensembl chr 5:58,765,036...58,944,326 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:9226440)
GO_REF:0000033
GO_REF:0000024		 Ensembl
RGD
GO_Central
UniProt		 PMID:9226440 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9729491)
GO_REF:0000107		 RGD
Ensembl		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:104685|MGI:98872 (PMID:15030764) RGD PMID:15030764 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:106034 (PMID:20515681)
GO_REF:0000107		 RGD
Ensembl		 PMID:20515681 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3691857 (PMID:20515681)
GO_REF:0000107		 RGD
Ensembl		 PMID:20515681 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:20515681) RGD PMID:20515681 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2147269|MGI:3625131 (PMID:16652366)
GO_REF:0000107		 RGD
Ensembl		 PMID:16652366 GO_REF:0000107 NCBI chr 2:175,703,413...175,709,063
Ensembl chr 2:175,703,441...175,709,058 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO
IEA		 MGI:1353474 (PMID:16652366)
GO_REF:0000107		 RGD
Ensembl		 PMID:16652366 GO_REF:0000107 NCBI chr 7:8,676,845...8,682,846
Ensembl chr 7:8,676,759...8,685,149 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:108051 (PMID:15183723)
GO_REF:0000107		 RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179191 (PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO
IEA		 MGI:1856015 (PMID:15728667)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr 2:189,265,373...189,376,466
Ensembl chr 2:186,576,676...186,687,663 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:8622766)
MGI:1888387 (PMID:8622765)		 UniProt
RGD		 PMID:8622765 PMID:8622766 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2680164 (PMID:16806156)
GO_REF:0000107		 RGD
Ensembl		 PMID:16806156 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA		 (PMID:12975342)
GO_REF:0000107		 RGD
Ensembl		 PMID:12975342 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:8988166), (PMID:8988167)
(PMID:8988167)
MGI:99829 (PMID:15030764)		 RGD PMID:8988166 PMID:8988167 PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:99829 (PMID:15030764) RGD PMID:15030764 NCBI chr 9:99,822,242...99,866,722
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:1856821|MGI:3526437 (PMID:16054034), (PMID:16998816) RGD PMID:16054034 PMID:16998816 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:88,635,331...88,657,035 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647|MGI:1927833 (PMID:15017552), (PMID:16618415)
GO_REF:0000107		 RGD
Ensembl		 PMID:15017552 PMID:16618415 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811|MGI:2183527 (PMID:16618415), (PMID:21492869), (PMID:21550054) RGD PMID:16618415 PMID:21492869 PMID:21550054 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxf1 forkhead box F1 involved_in ISO
IEA		 (PMID:19500772)
GO_REF:0000107		 RGD
Ensembl		 PMID:19500772 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2386764 (PMID:16127717) RGD PMID:16127717 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:16247775)
GO_REF:0000107		 RGD
Ensembl		 PMID:16247775 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within ISO
IEA		 MGI:2182089 (PMID:8557196)
GO_REF:0000107		 RGD
Ensembl		 PMID:8557196 GO_REF:0000107 NCBI chr13:98,811,852...98,817,264
Ensembl chr13:96,280,339...96,285,750 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA		 MGI:1857856 (PMID:18635606)
GO_REF:0000107		 RGD
Ensembl		 PMID:18635606 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16888283)		 UniProt
RGD		 PMID:16888283 GO_REF:0000024 NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:10821773)
GO_REF:0000107		 RGD
Ensembl		 PMID:10821773 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:19242925), (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 PMID:19242925 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3522498 (PMID:16423343)
GO_REF:0000107		 RGD
Ensembl		 PMID:16423343 GO_REF:0000107 NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:10903171)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10903171 GO_REF:0000024 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:3767234 (PMID:21550054) RGD PMID:21550054 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934261 (PMID:10821773)
GO_REF:0000107		 RGD
Ensembl		 PMID:10821773 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3605739 (PMID:16141225)
GO_REF:0000107		 RGD
Ensembl		 PMID:16141225 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA		 (PMID:19660448)
GO_REF:0000107		 RGD
Ensembl		 PMID:19660448 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15254231)		 UniProt
Ensembl
RGD		 PMID:15254231 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tcf21 transcription factor 21 IMP RGD PMID:11804032 RGD:727206 NCBI chr 1:24,520,499...24,523,358
Ensembl chr 1:22,701,353...22,704,202 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:1202879 (PMID:15057272) RGD PMID:15057272 NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:98507 (PMID:15057272) RGD PMID:15057272 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
embryonic digit morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857484|MGI:88180 (PMID:9268572), (PMID:9272948)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 PMID:9272948 GO_REF:0000107 NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (PMID:22179047) RGD PMID:22179047 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:108359|MGI:95729 (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:88276 (PMID:20043884)
GO_REF:0000107		 RGD
Ensembl		 PMID:20043884 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:22,573,241...22,600,126
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO MGI:5297398 (PMID:25877302) RGD PMID:25877302 NCBI chr 2:58,996,119...59,096,817
Ensembl chr 2:57,268,884...57,369,500 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1338938|MGI:1858008|MGI:2148594|MGI:2158470 (PMID:12923052), (PMID:20043884)
GO_REF:0000107		 RGD
Ensembl		 PMID:12923052 PMID:20043884 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO
IEA		 (PMID:9915973)
GO_REF:0000107		 RGD
Ensembl		 PMID:9915973 GO_REF:0000107 NCBI chr 5:155,361,031...155,462,723
Ensembl chr 5:150,077,644...150,179,371 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO MGI:1857833|MGI:1857834 (PMID:10471509), (PMID:9733575) RGD PMID:9733575 PMID:10471509 NCBI chr 1:254,375,921...254,465,173
Ensembl chr 1:244,426,896...244,514,163 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO
IEA		 MGI:3776021 (PMID:18258918)
GO_REF:0000107		 RGD
Ensembl		 PMID:18258918 GO_REF:0000107 NCBI chr13:105,117,402...105,139,780
Ensembl chr13:102,586,257...102,608,661 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO
IEA		 MGI:3794302 (PMID:26234751)
GO_REF:0000107		 RGD
Ensembl		 PMID:26234751 GO_REF:0000107 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090|MGI:4346364 (PMID:19877275), (PMID:27158779) RGD PMID:19877275 PMID:27158779 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (PMID:17504940), (PMID:17504941) RGD PMID:17504940 PMID:17504941 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:2445472 (PMID:19439426) RGD PMID:19439426 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:3834146 (PMID:19056373) RGD PMID:19056373 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276|MGI:3798847|MGI:88180|MGI:96203|MGI:96204|MGI:96205 (PMID:16254602), (PMID:17714700), (PMID:19036983), (PMID:22841643), (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 PMID:16254602 PMID:17714700 PMID:19036983 PMID:22841643 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gna12 G protein subunit alpha 12 acts_upstream_of_or_within ISO
IEA		 MGI:95776 (PMID:12077299)
GO_REF:0000107		 RGD
Ensembl		 PMID:12077299 GO_REF:0000107 NCBI chr12:18,919,629...19,000,185
Ensembl chr12:13,805,698...13,886,255 		JBrowse link
G Gnaq G protein subunit alpha q acts_upstream_of_or_within ISO MGI:95767 (PMID:12077299) RGD PMID:12077299 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA		 MGI:4942413 (PMID:21377456)
GO_REF:0000107		 RGD
Ensembl		 PMID:21377456 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA		 (PMID:12070084)
GO_REF:0000107		 RGD
Ensembl		 PMID:12070084 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (PMID:21093383) RGD PMID:21093383 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (PMID:21093383) RGD PMID:21093383 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA		 MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107		 RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA		 MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107		 RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:135,969,707...135,973,222
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:95729|MGI:96172|MGI:96193|MGI:96204|MGI:96205 (PMID:12869760), (PMID:17714700), (PMID:8900279) RGD PMID:8900279 PMID:12869760 PMID:17714700 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd12 homeo box D12 acts_upstream_of_or_within ISO
IEA		 MGI:95729|MGI:96203|MGI:96205 (PMID:17714700), (PMID:8900279)
GO_REF:0000107		 RGD
Ensembl		 PMID:8900279 PMID:17714700 GO_REF:0000107 NCBI chr 3:79,985,106...79,986,227
Ensembl chr 3:59,577,677...59,578,798 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA		 MGI:1918115|MGI:95729|MGI:96203|MGI:96204 (PMID:17714700), (PMID:8900279), (PMID:9342042)
GO_REF:0000107		 RGD
Ensembl		 PMID:8900279 PMID:9342042 PMID:17714700 GO_REF:0000107 NCBI chr 3:79,978,077...79,981,393
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:15755804) RGD PMID:15755804 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA		 MGI:4458412 (PMID:23469164)
GO_REF:0000107		 RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA		 (PMID:15930098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:172,091,591...172,116,497
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527|MGI:3027342|MGI:3823090|MGI:98297 (PMID:12701101), (PMID:15755804), (PMID:15930098), (PMID:16254602), (PMID:19036983) RGD PMID:12701101 PMID:15755804 PMID:15930098 PMID:16254602 PMID:19036983 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:17889828)
GO_REF:0000107
MGI:1347521|MGI:3842979 (PMID:20660756)		 RGD
Ensembl		 PMID:17889828 PMID:20660756 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:27158779)
GO_REF:0000107
(PMID:25774014)		 RGD
Ensembl		 PMID:25774014 PMID:27158779 GO_REF:0000107 NCBI chr 2:125,528,965...125,613,295
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Lmbr1 limb development membrane protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3579991 (PMID:11606546)
GO_REF:0000107		 RGD
Ensembl		 PMID:11606546 GO_REF:0000107 NCBI chr 4:6,649,824...6,820,525
Ensembl chr 4:5,974,750...6,146,368 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO
IEA		 MGI:96205 (PMID:9342042)
GO_REF:0000107		 RGD
Ensembl		 PMID:9342042 GO_REF:0000107 NCBI chr 3:79,826,318...79,894,514
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:2661383|MGI:3580702 (PMID:16517118)
GO_REF:0000107		 RGD
Ensembl		 PMID:16517118 GO_REF:0000107 NCBI chr 3:97,885,373...97,939,366
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:15142971)
GO_REF:0000107		 RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315|MGI:2156191 (PMID:15142971), (PMID:19795512) RGD PMID:15142971 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO
IEA		 (PMID:26755636)
GO_REF:0000107		 RGD
Ensembl		 PMID:26755636 GO_REF:0000107 NCBI chr 3:77,538,146...77,697,540
Ensembl chr 3:57,130,551...57,289,626 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within ISO
IEA		 (PMID:32203821)
GO_REF:0000107		 RGD
Ensembl		 PMID:32203821 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:4410614|MGI:4433029|MGI:4887578 (PMID:19776033), (PMID:21045211), (PMID:23454480)
GO_REF:0000107		 RGD
Ensembl		 PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 NCBI chr10:73,152,599...73,167,451
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA		 (PMID:17360777)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:10080184)		 Ensembl
RGD		 PMID:10080184 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 UniProtKB:Q9WVG7 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA		 MGI:4941929 (PMID:23913870)
GO_REF:0000107		 RGD
Ensembl		 PMID:23913870 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO MGI:2137533 (PMID:15755804), (PMID:9636176) RGD PMID:9636176 PMID:15755804 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2386954|MGI:3793279|MGI:96533 (PMID:20660756) RGD PMID:20660756 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sall1 spalt-like transcription factor 1 involved_in ISO
IEA		 (PMID:18280297)
GO_REF:0000107
(PMID:18470945)		 RGD
Ensembl		 PMID:18280297 PMID:18470945 GO_REF:0000107 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:3810257 (PMID:18729207)
GO_REF:0000107		 RGD
Ensembl		 PMID:18729207 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11044396)
MGI:95655|MGI:98715 (PMID:15930098), (PMID:17504940), (PMID:17504941), (PMID:20660756)		 UniProt
Ensembl
RGD		 PMID:11044396 PMID:15930098 PMID:17504940 PMID:17504941 PMID:20660756 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23034633)		 Ensembl
RGD		 PMID:23034633 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:15459098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15459098 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 ISO
IEA
ISS		 (PMID:12116211), (PMID:9207801)
GO_REF:0000107
MGI:5538564 (PMID:27046536)
MGI:5538565 (PMID:23844108)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:9207801 PMID:12116211 PMID:23844108 PMID:27046536 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) RGD PMID:22698544 NCBI chr10:54,268,218...54,273,520
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO MGI:4284576 (PMID:22179047) RGD PMID:22179047 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:4129326 (PMID:21945076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21945076 GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:5496675 (PMID:23141541)
GO_REF:0000107		 RGD
Ensembl		 PMID:23141541 GO_REF:0000107 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:107,697,340...107,803,223 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2388066 (PMID:19286674), (PMID:19334287)
GO_REF:0000107		 RGD
Ensembl		 PMID:19286674 PMID:19334287 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:3038818 (PMID:15030764) RGD PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:27158779)
GO_REF:0000107
MGI:5558098|MGI:5558100 (PMID:24302887)		 RGD
Ensembl		 PMID:24302887 PMID:27158779 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1857617 (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA		 (PMID:16826533)
GO_REF:0000107		 RGD
Ensembl		 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 IMP RGD PMID:19191224 RGD:2312786 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO
IEA		 (PMID:19500772)
GO_REF:0000107		 RGD
Ensembl		 PMID:19500772 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
embryonic epithelial tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ret ret proto-oncogene acts_upstream_of_or_within ISO
IEA		 MGI:1930016 (PMID:15569713)
GO_REF:0000107		 RGD
Ensembl		 PMID:15569713 GO_REF:0000107 NCBI chr 4:152,998,344...153,040,556
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 acts_upstream_of_or_within ISO
IEA		 MGI:97902 (PMID:15569713)
GO_REF:0000107		 RGD
Ensembl		 PMID:15569713 GO_REF:0000107 NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO
IEA		 (PMID:16546160)
GO_REF:0000107		 RGD
Ensembl		 PMID:16546160 GO_REF:0000107 NCBI chr 5:154,797,245...154,818,565
Ensembl chr 5:149,514,018...149,532,859 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16207763), (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:1353450|MGI:3043947 (PMID:16207763), (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3044226 (PMID:15056605)
GO_REF:0000107		 RGD
Ensembl		 PMID:15056605 GO_REF:0000107 NCBI chr 8:108,392,466...108,395,553
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO
IBA		 (PMID:25406291)
GO_REF:0000033		 RGD
GO_Central		 PMID:25406291 GO_REF:0000033 NCBI chr 5:158,595,121...158,603,283
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,399,919...157,422,448
Ensembl chr 4:155,727,925...155,750,458 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97857 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:2159246 (PMID:10595508), (PMID:11830579)
GO_REF:0000107		 RGD
Ensembl		 PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr 4:117,753,180...117,777,242
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA		 MGI:1857709 (PMID:10921901)
GO_REF:0000107		 RGD
Ensembl		 PMID:10921901 GO_REF:0000107 NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567 (PMID:18692041)
GO_REF:0000107		 RGD
Ensembl		 PMID:18692041 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA		 MGI:3822451 (PMID:18794329)
GO_REF:0000107		 RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432 (PMID:11493558)
GO_REF:0000107		 RGD
Ensembl		 PMID:11493558 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO MGI:3055161 (PMID:15361625) RGD PMID:15361625 NCBI chr 9:13,058,506...13,115,406
Ensembl chr 9:13,058,476...13,114,879 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443|MGI:2386265 (PMID:9136932), (PMID:9136933) RGD PMID:9136932 PMID:9136933 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1857796 (PMID:9731532)
GO_REF:0000107		 RGD
Ensembl		 PMID:9731532 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:108051 (PMID:15183723)
GO_REF:0000107		 RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2179440|MGI:3717118|MGI:4356113 (PMID:18462699), (PMID:19619492)
GO_REF:0000107
(PMID:21305474)		 RGD
Ensembl		 PMID:18462699 PMID:19619492 PMID:21305474 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
embryonic forelimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:2180721 (PMID:15069081), (PMID:20034106)
GO_REF:0000107		 RGD
Ensembl		 PMID:15069081 PMID:20034106 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:108359 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 2:197,919,381...197,929,795
Ensembl chr 2:195,231,197...195,241,609 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA		 MGI:1277097 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) RGD PMID:15454078 NCBI chr 4:153,431,169...154,051,932
Ensembl chr 4:151,764,138...152,379,648 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO MGI:1857508 (PMID:7720575) RGD PMID:7720575 NCBI chr 2:175,714,862...175,719,208
Ensembl chr 2:173,416,857...173,421,379 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:15371327)
GO_REF:0000107		 RGD
Ensembl		 PMID:15371327 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:98961 (PMID:9362463)
GO_REF:0000107		 RGD
Ensembl		 PMID:9362463 GO_REF:0000107 NCBI chr13:34,303,684...34,309,269
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA		 MGI:96203 (PMID:22916278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22916278 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO
IEA		 MGI:2150506 (PMID:15733672)
GO_REF:0000107		 RGD
Ensembl		 PMID:15733672 GO_REF:0000107 NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:81,358,956...81,361,091 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within ISO MGI:96210 (PMID:8625797) RGD PMID:8625797 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:22916278) RGD PMID:22916278 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd9 homeo box D9 acts_upstream_of_or_within ISO
IEA		 MGI:2150414|MGI:96180 (PMID:8625797)
GO_REF:0000107		 RGD
Ensembl		 PMID:8625797 GO_REF:0000107 NCBI chr 3:80,008,006...80,010,186
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Lnpk lunapark, ER junction formation factor acts_upstream_of_or_within ISO
IEA		 MGI:1857660 (PMID:22916278), (PMID:9342042)
GO_REF:0000107		 RGD
Ensembl		 PMID:9342042 PMID:22916278 GO_REF:0000107 NCBI chr 3:79,826,318...79,894,514
Ensembl chr 3:59,424,286...59,486,518 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667|MGI:2156191|MGI:4415718|MGI:98961 (PMID:11029008), (PMID:15880584), (PMID:18256198), (PMID:19653321) RGD PMID:11029008 PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO MGI:2158381 (PMID:17029558) RGD PMID:17029558 NCBI chr 2:114,837,815...115,393,052
Ensembl chr 2:112,909,321...113,464,590 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:19242925), (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 PMID:19242925 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 UniProtKB:Q9WVG7 (PMID:11520675), (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:11520675 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs acts_upstream_of_or_within ISO
IEA		 MGI:4830337 (PMID:23213437)
GO_REF:0000107		 RGD
Ensembl		 PMID:23213437 GO_REF:0000107 NCBI chr 5:62,898,717...62,965,274
Ensembl chr 5:58,102,981...58,169,502 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1298218|MGI:3045965 (PMID:18256198)
GO_REF:0000107		 RGD
Ensembl		 PMID:18256198 GO_REF:0000107 NCBI chr 7:75,987,217...76,123,984
Ensembl chr 7:74,103,090...74,238,933 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176466 (PMID:22916278) RGD PMID:22916278 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1857796 (PMID:11118883), (PMID:11476582)
GO_REF:0000107		 RGD
Ensembl		 PMID:11118883 PMID:11476582 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA		 (PMID:22916278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22916278 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
IEA
ISS		 (PMID:12116211)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:12116211 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO
IEA
ISS		 (PMID:16183809)
GO_REF:0000107
MGI:2387851 (PMID:11572777), (PMID:12490567)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:11572777 PMID:12490567 PMID:16183809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:9811866)		 UniProt
RGD		 PMID:9811866 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA		 MGI:5882553|MGI:5882555 (PMID:25503409)
GO_REF:0000107		 RGD
Ensembl		 PMID:25503409 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:12175489) RGD PMID:12175489 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16826533)
GO_REF:0000107
MGI:1298218|MGI:1857009|MGI:95389 (PMID:15880584), (PMID:9362463)		 RGD
Ensembl		 PMID:9362463 PMID:15880584 PMID:16826533 GO_REF:0000107 MGI:48652 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (PMID:15371327) RGD PMID:15371327 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647 (PMID:12004962)
GO_REF:0000107		 RGD
Ensembl		 PMID:12004962 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:1202879 (PMID:15057272) RGD PMID:15057272 NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:98507 (PMID:15057272) RGD PMID:15057272 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA		 (PMID:11076684)
GO_REF:0000107		 RGD
Ensembl		 PMID:11076684 GO_REF:0000107 NCBI chr10:42,507,117...42,509,684
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA		 (PMID:19506109)
GO_REF:0000107		 RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19609448)		 Ensembl
RGD		 PMID:19609448 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:24052814)
GO_REF:0000024		 Ensembl
RGD
CAFA		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:10393122)
GO_REF:0000107		 RGD
Ensembl		 PMID:10393122 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Ryr2 ryanodine receptor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9628868)		 UniProt
RGD		 PMID:9628868 GO_REF:0000024 NCBI chr17:63,081,527...63,667,141
Ensembl chr17:58,389,925...58,975,142 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA		 (PMID:21305474)
GO_REF:0000107		 RGD
Ensembl		 PMID:21305474 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO
IEA		 (PMID:15901664)
GO_REF:0000107		 RGD
Ensembl		 PMID:15901664 GO_REF:0000107 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO MGI:103262|MGI:104904 (PMID:18332127) RGD PMID:18332127 NCBI chr 1:176,227,175...176,445,122
Ensembl chr 1:166,792,628...167,003,369 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:101876|MGI:103262 (PMID:18332127) RGD PMID:18332127 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within ISO
IEA		 MGI:101876|MGI:104904 (PMID:18332127)
GO_REF:0000107		 RGD
Ensembl		 PMID:18332127 GO_REF:0000107 NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010 		JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled-binding antagonist of beta-catenin 1 involved_in ISO (PMID:20145239) RGD PMID:20145239 NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:89,790,644...89,817,906 		JBrowse link
G Hoxa13 homeo box A13 IMP RGD PMID:17161201 RGD:1599527 NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:81,358,956...81,361,091 		JBrowse link
G Hoxd13 homeo box D13 IMP RGD PMID:17161201 RGD:1599527 NCBI chr 3:79,978,077...79,981,393
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO MGI:1202879 (PMID:15057272) RGD PMID:15057272 NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO MGI:98507 (PMID:15057272) RGD PMID:15057272 NCBI chr 1:264,791,335...264,984,225
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
embryonic hindlimb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff3 ALF transcription elongation factor 3 involved_in ISO
IEA		 (PMID:18616733)
GO_REF:0000107		 RGD
Ensembl		 PMID:18616733 GO_REF:0000107 NCBI chr 9:47,894,903...48,352,380
Ensembl chr 9:40,404,375...40,857,247 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:108359 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 2:197,919,381...197,929,795
Ensembl chr 2:195,231,197...195,241,609 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA		 MGI:1277097 (PMID:11641221)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:104903 (PMID:10964473)
GO_REF:0000107		 RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:3588650 (PMID:16207732)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207732 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:2148594|MGI:2158470 (PMID:12923052), (PMID:18231602)
GO_REF:0000107		 RGD
Ensembl		 PMID:12923052 PMID:18231602 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:2450929|MGI:3589208 (PMID:16319892) RGD PMID:16319892 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:99604 (PMID:16245339)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245339 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:95518 (PMID:16245339)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245339 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA		 MGI:3043361 (PMID:15797856)
GO_REF:0000107		 RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:10964473)
GO_REF:0000107		 RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1922667|MGI:4415718|MGI:98961 (PMID:15880584), (PMID:18256198), (PMID:19653321) RGD PMID:15880584 PMID:18256198 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO MGI:2158381 (PMID:17029558) RGD PMID:17029558 NCBI chr 2:114,837,815...115,393,052
Ensembl chr 2:112,909,321...113,464,590 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:2684189 (PMID:14500757)
GO_REF:0000107		 RGD
Ensembl		 PMID:14500757 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mmp13 matrix metallopeptidase 13 IEP RGD PMID:11850435 RGD:1582550 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1933835|MGI:2158470 (PMID:16245338)
GO_REF:0000107		 RGD
Ensembl		 PMID:16245338 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 UniProtKB:Q9WVG7 (PMID:11520675), (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:11520675 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109340 (PMID:18231602)
GO_REF:0000107
(PMID:22071103)		 RGD
Ensembl		 PMID:18231602 PMID:22071103 GO_REF:0000107 NCBI chr17:8,794,051...8,805,477
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:107374 (PMID:18231602) RGD PMID:18231602 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:10075839)
GO_REF:0000107		 RGD
Ensembl		 PMID:10075839 GO_REF:0000107 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97857 (PMID:10075839)
GO_REF:0000107		 RGD
Ensembl		 PMID:10075839 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rspo2 R-spondin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1298218|MGI:3045965 (PMID:18256198)
GO_REF:0000107		 RGD
Ensembl		 PMID:18256198 GO_REF:0000107 NCBI chr 7:75,987,217...76,123,984
Ensembl chr 7:74,103,090...74,238,933 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1857796 (PMID:11118883)
GO_REF:0000107		 RGD
Ensembl		 PMID:11118883 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2177413|MGI:3605892 (PMID:16192310) RGD PMID:16192310 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:5538565 (PMID:23844108)
GO_REF:0000107		 RGD
Ensembl		 PMID:23844108 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:31761294) RGD PMID:31761294 NCBI chr10:71,228,145...71,258,222
Ensembl chr10:70,731,163...70,760,825 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA		 MGI:5882553|MGI:5882555 (PMID:25503409)
GO_REF:0000107		 RGD
Ensembl		 PMID:25503409 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988167) RGD PMID:8988167 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:16826533)
GO_REF:0000107
MGI:1298218 (PMID:15880584)		 RGD
Ensembl		 PMID:15880584 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IMP
IEA
ISO		 GO_REF:0000107
MGI:2182708 (PMID:10835630)		 Ensembl
RGD		 PMID:10835630 PMID:19191224 GO_REF:0000107, RGD:2312786 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
embryonic limb morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO
IEA		 MGI:1856658 (PMID:15537664)
GO_REF:0000107		 RGD
Ensembl		 PMID:15537664 GO_REF:0000107 NCBI chr19:50,496,634...50,499,397
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:2180721 (PMID:14623241)
GO_REF:0000107		 RGD
Ensembl		 PMID:14623241 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:108359 (PMID:9847249)
GO_REF:0000107		 RGD
Ensembl		 PMID:9847249 GO_REF:0000107 NCBI chr 7:40,044,185...40,063,778
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:103302|MGI:1857137 (PMID:9664686)
GO_REF:0000107		 RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1934010|MGI:88180 (PMID:9664686)
GO_REF:0000107		 RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA		 MGI:3039046 (PMID:15030763)
GO_REF:0000107		 RGD
Ensembl		 PMID:15030763 GO_REF:0000107 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:2450929|MGI:3589208 (PMID:16040801) RGD PMID:16040801 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA		 MGI:95389|MGI:98961 (PMID:15242796)
GO_REF:0000107		 RGD
Ensembl		 PMID:15242796 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:101927|MGI:1330810 (PMID:12112878), (PMID:18326838)
GO_REF:0000107		 RGD
Ensembl		 PMID:12112878 PMID:18326838 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO
IEA		 MGI:101926|MGI:1330810 (PMID:12112878), (PMID:18326838)
GO_REF:0000107		 RGD
Ensembl		 PMID:12112878 PMID:18326838 GO_REF:0000107 NCBI chr 4:35,951,005...35,956,354
Ensembl chr 4:34,984,232...34,991,343 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16229832)
GO_REF:0000107		 RGD
Ensembl		 PMID:16229832 GO_REF:0000107 NCBI chr 8:12,473,955...12,697,075
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1329040|MGI:1857163|MGI:98961 (PMID:15242796), (PMID:8684466)
GO_REF:0000107
(PMID:7624797)		 RGD
Ensembl		 PMID:7624797 PMID:8684466 PMID:15242796 GO_REF:0000107 NCBI chr13:34,303,684...34,309,269
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fbn2 fibrillin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1935122|MGI:1935123|MGI:2157491 (PMID:11285249), (PMID:11350121)
GO_REF:0000107		 RGD
Ensembl		 PMID:11285249 PMID:11350121 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:99604 (PMID:15328019)
GO_REF:0000107		 RGD
Ensembl		 PMID:15328019 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:17576930) RGD PMID:17576930 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2176216|MGI:2181474 (PMID:16207751)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207751 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:5463442 (PMID:23469164)
GO_REF:0000107		 RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr14:12,791,407...13,200,862
Ensembl chr14:12,793,599...13,200,726 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:1855974 (PMID:15542031)
GO_REF:0000107		 RGD
Ensembl		 PMID:15542031 GO_REF:0000107 NCBI chr 3:164,914,401...164,918,593
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gja5 gap junction protein, alpha 5 acts_upstream_of_or_within ISO
IEA		 MGI:2445466 (PMID:15923624)
GO_REF:0000107		 RGD
Ensembl		 PMID:15923624 GO_REF:0000107 NCBI chr 2:187,291,227...187,310,770
Ensembl chr 2:184,564,475...184,621,952 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276|MGI:96533|MGI:98297 (PMID:12142027), (PMID:12435361), (PMID:12435627), (PMID:16284117), (PMID:19422820), (PMID:19809516), (PMID:8387379)
GO_REF:0000107		 RGD
Ensembl		 PMID:8387379 PMID:12142027 PMID:12435361 PMID:12435627 PMID:16284117 More... GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:3054923 (PMID:12808456) RGD PMID:12808456 NCBI chr 3:120,966,639...120,978,319
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO
IEA		 MGI:96770 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr12:47,299,171...47,333,457
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA		 MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107		 RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:82,662,204...82,671,490
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA		 MGI:96203 (PMID:14668414)
GO_REF:0000107		 RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA		 MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107		 RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:135,982,222...135,987,442
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA		 MGI:96171|MGI:96192 (PMID:12869760)
GO_REF:0000107		 RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 3:80,001,947...80,005,156
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA		 MGI:1857397 (PMID:11850178)
GO_REF:0000107		 RGD
Ensembl		 PMID:11850178 GO_REF:0000107 NCBI chr 3:79,978,077...79,981,393
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in NAS PMID:8948600 UniProt PMID:8948600 RGD:69864 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:98504 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:3621893|MGI:3707726|MGI:3707955 (PMID:16207730), (PMID:17119023)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207730 PMID:17119023 GO_REF:0000107 NCBI chr 3:97,885,373...97,939,366
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1921749 (PMID:20359476) RGD PMID:20359476 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 involved_in ISO (PMID:12915312) RGD PMID:12915312 NCBI chr 2:146,789,570...146,964,136
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24052814)		 CAFA
Ensembl
RGD		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO
IEA		 (PMID:34486668)
GO_REF:0000107		 RGD
Ensembl		 PMID:34486668 GO_REF:0000107 NCBI chr 1:175,217,680...175,288,521
Ensembl chr 1:175,217,545...175,288,334 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169|MGI:98297 (PMID:15930102), (PMID:19422820) RGD PMID:15930102 PMID:19422820 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168|MGI:98297 (PMID:15930102), (PMID:19422820)
GO_REF:0000107		 RGD
Ensembl		 PMID:15930102 PMID:19422820 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 IEP RGD PMID:14718386 RGD:1302424 NCBI chr16:6,079,355...6,081,608
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:97364 (PMID:16169548)
GO_REF:0000107		 RGD
Ensembl		 PMID:16169548 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO
IEA		 MGI:97363 (PMID:16169548)
GO_REF:0000107		 RGD
Ensembl		 PMID:16169548 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1341793 (PMID:16672333)
GO_REF:0000107		 RGD
Ensembl		 PMID:16672333 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO MGI:97495 (PMID:16672333) RGD PMID:16672333 NCBI chr20:4,156,107...4,161,503
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA		 MGI:4941929 (PMID:23913870)
GO_REF:0000107		 RGD
Ensembl		 PMID:23913870 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:98218 (PMID:9729491), (PMID:9882503)
GO_REF:0000107		 RGD
Ensembl		 PMID:9729491 PMID:9882503 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491), (PMID:9882503) RGD PMID:9729491 PMID:9882503 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA		 MGI:109284 (PMID:16169548)
GO_REF:0000107		 RGD
Ensembl		 PMID:16169548 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:16169548) RGD PMID:16169548 NCBI chr13:94,499,451...94,528,419
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Ptch1 patched 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1856954|MGI:98297 (PMID:11389830), (PMID:11784021)		 UniProt
Ensembl
RGD		 PMID:11389830 PMID:11784021 GO_REF:0000024 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:102541|MGI:3587949 (PMID:16380715)
GO_REF:0000107		 RGD
Ensembl		 PMID:16380715 GO_REF:0000107 NCBI chr 3:177,891,705...177,909,743
Ensembl chr 3:157,474,642...157,490,822 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:105373|MGI:3053959|MGI:3053960|MGI:95729|MGI:97168|MGI:97169 (PMID:11389830), (PMID:15315763), (PMID:19422820)		 UniProt
Ensembl
RGD		 PMID:11389830 PMID:15315763 PMID:19422820 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3605739|MGI:3628798 (PMID:16537395), (PMID:17481601)
GO_REF:0000107		 RGD
Ensembl		 PMID:16537395 PMID:17481601 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:12435627) RGD PMID:12435627 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2684137 (PMID:14597661)
GO_REF:0000107
(PMID:15358670)		 RGD
Ensembl		 PMID:14597661 PMID:15358670 GO_REF:0000107 NCBI chr 6:145,959,219...145,961,824
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Sp9 Sp9 transcription factor involved_in ISO
IEA		 (PMID:15358670)
GO_REF:0000107		 RGD
Ensembl		 PMID:15358670 GO_REF:0000107 NCBI chr 3:58,146,826...58,149,357
Ensembl chr 3:58,146,826...58,149,357 		JBrowse link
G Tbx4 T-box transcription factor 4 acts_upstream_of_or_within ISO MGI:2663716 (PMID:12736212) RGD PMID:12736212 NCBI chr10:71,228,145...71,258,222
Ensembl chr10:70,731,163...70,760,825 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO
IEA
ISS		 (PMID:8988164)
GO_REF:0000107
MGI:2139360 (PMID:12736217), (PMID:16380715)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:8988164 PMID:12736217 PMID:16380715 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA		 (PMID:9217007)
GO_REF:0000107		 RGD
Ensembl		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA		 MGI:101926|MGI:101927|MGI:1934580 (PMID:10227293), (PMID:18326838)
GO_REF:0000107		 RGD
Ensembl		 PMID:10227293 PMID:18326838 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265|MGI:2157489|MGI:3038818 (PMID:11350121), (PMID:12142027), (PMID:15030764) RGD PMID:11350121 PMID:12142027 PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747|MGI:5315748 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1857617 (PMID:10021340)
GO_REF:0000107		 RGD
Ensembl		 PMID:10021340 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO
IEA		 MGI:1329040|MGI:95389 (PMID:15242796)
GO_REF:0000107		 RGD
Ensembl		 PMID:15242796 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI:1856943 RGD MGI:61278 NCBI chr 8:57,885,886...58,073,507
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
embryonic nail plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:3050103 (PMID:23439395)
GO_REF:0000107		 RGD
Ensembl		 PMID:23439395 GO_REF:0000107 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:70,055,068...70,086,776 		JBrowse link
G Msx1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11369996)
MGI:97169 (PMID:21465616)		 RGD PMID:11369996 PMID:21465616 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97168 (PMID:21465616)
GO_REF:0000107		 RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:4941929 (PMID:23913870)		 Ensembl
RGD		 PMID:23913870 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1917550 (PMID:27395007)
GO_REF:0000107		 RGD
Ensembl		 PMID:27395007 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090|MGI:99604 (PMID:27395007) RGD PMID:27395007 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:27395007)
GO_REF:0000107		 RGD
Ensembl		 PMID:27395007 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA		 MGI:4839485 (PMID:20589884)
GO_REF:0000107		 RGD
Ensembl		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA		 (PMID:23267094)
GO_REF:0000107		 RGD
Ensembl		 PMID:23267094 GO_REF:0000107 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3589383 (PMID:16020517)
GO_REF:0000107		 RGD
Ensembl		 PMID:16020517 GO_REF:0000107 NCBI chr18:56,407,308...56,470,007
Ensembl chr18:54,140,779...54,178,191 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2388066 (PMID:19286674)
GO_REF:0000107		 RGD
Ensembl		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
embryonic organ morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (PMID:15843416) RGD PMID:15843416 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxe1 forkhead box E1 acts_upstream_of_or_within ISO
IEA		 MGI:2181780 (PMID:9697704)
GO_REF:0000107		 RGD
Ensembl		 PMID:9697704 GO_REF:0000107 NCBI chr 5:65,425,630...65,428,438
Ensembl chr 5:60,630,027...60,632,835 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within ISO
IEA		 MGI:2150683 (PMID:8660891)
GO_REF:0000107		 RGD
Ensembl		 PMID:8660891 GO_REF:0000107 NCBI chr 7:136,049,059...136,051,601
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc6 homeo box C6 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:136,013,679...136,051,601
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISO (PMID:9308961) RGD PMID:9308961 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:15994349) RGD PMID:15994349 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2386105|MGI:3611933 (PMID:16287714) RGD PMID:16287714 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
embryonic placenta morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO
IEA		 MGI:1933758|MGI:3840687 (PMID:19276117)
GO_REF:0000107		 RGD
Ensembl		 PMID:19276117 GO_REF:0000107 NCBI chr 1:208,084,801...208,087,680
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
G Igf2 insulin-like growth factor 2 involved_in ISO (PMID:28522536) RGD PMID:28522536 NCBI chr 1:207,243,873...207,261,263
Ensembl chr 1:197,814,410...197,823,018 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Trim28 tripartite motif-containing 28 acts_upstream_of_or_within ISO
IEA		 MGI:1928907 (PMID:22110054)
GO_REF:0000107		 RGD
Ensembl		 PMID:22110054 GO_REF:0000107 NCBI chr 1:82,724,842...82,731,566
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Vcam1 vascular cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:2153830 (PMID:7530222) RGD PMID:7530222 NCBI chr 2:206,723,050...206,742,783
Ensembl chr 2:204,038,114...204,057,958 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:2387443 (PMID:11543617) RGD PMID:11543617 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within
involved_in		 ISO MGI:3578538 (PMID:21094155)
(PMID:28522536)		 RGD PMID:21094155 PMID:28522536 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120 (PMID:19754878)
GO_REF:0000107		 RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18094249)		 UniProt
Ensembl
RGD		 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:12692551)
GO_REF:0000107		 RGD
Ensembl		 PMID:12692551 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) RGD PMID:10469643 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1856035|MGI:1856036 RGD MGI:48782 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:103302|MGI:1857137 (PMID:9664686)
GO_REF:0000107		 RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1934010|MGI:88180 (PMID:9664686)
GO_REF:0000107		 RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IEA		 (PMID:16752401)
GO_REF:0000107		 RGD
Ensembl		 PMID:16752401 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:96193|MGI:96203 (PMID:20978074)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:20978074 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:96172|MGI:96203 (PMID:20978074)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:20978074 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:135,969,707...135,973,222
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:96172|MGI:96193 (PMID:20978074)
GO_REF:0000033		 RGD
GO_Central		 PMID:20978074 GO_REF:0000033 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2658730 (PMID:18772348)
GO_REF:0000107		 RGD
Ensembl		 PMID:18772348 GO_REF:0000107 NCBI chr 8:117,129,311...117,133,162
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Nog noggin involved_in ISO
IEA		 (PMID:16151340)
GO_REF:0000107		 RGD
Ensembl		 PMID:16151340 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3626291 (PMID:18514492)
GO_REF:0000107		 RGD
Ensembl		 PMID:18514492 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q91ZD1 (PMID:21262216)		 Ensembl
RGD		 PMID:21262216 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280) RGD PMID:21185280 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA		 UniProtKB:Q9WVG7 (PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:108359 (PMID:15728667), (PMID:9847249)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:9847249 PMID:15728667 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:40,044,185...40,063,778
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:108359 (PMID:11641221), (PMID:15728667)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 2:197,919,381...197,929,795
Ensembl chr 2:195,231,197...195,241,609 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA		 MGI:104621|MGI:1277097|MGI:1856069 (PMID:11641221), (PMID:15728667), (PMID:9847249)
GO_REF:0000107		 RGD
Ensembl		 PMID:9847249 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 3:100,067,052...100,103,624
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO MGI:3840841 (PMID:19270745) RGD PMID:19270745 NCBI chr 6:32,090,497...32,234,487
Ensembl chr 6:26,425,954...26,507,477 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA		 MGI:99161 (PMID:11290297)
GO_REF:0000107		 RGD
Ensembl		 PMID:11290297 GO_REF:0000107 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:2158495 (PMID:16712836)
GO_REF:0000107		 RGD
Ensembl		 PMID:16712836 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752) RGD PMID:4100752 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:2680670 (PMID:11238884)
GO_REF:0000107		 RGD
Ensembl		 PMID:11238884 GO_REF:0000107 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:68,911,883...69,102,689 		JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 involved_in ISO
IEA		 (PMID:12051741)
GO_REF:0000107		 RGD
Ensembl		 PMID:12051741 GO_REF:0000107 NCBI chr 8:54,637,054...54,954,042
Ensembl chr 8:45,740,298...46,057,320 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO
IEA		 (PMID:23910462)
GO_REF:0000107		 RGD
Ensembl		 PMID:23910462 GO_REF:0000107 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO
IEA		 MGI:5474636 (PMID:23187127)
GO_REF:0000107		 RGD
Ensembl		 PMID:23187127 GO_REF:0000107 NCBI chr13:105,117,402...105,139,780
Ensembl chr13:102,586,257...102,608,661 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (PMID:9409679) RGD PMID:9409679 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:19767740), (PMID:21935430), (PMID:23806618)		 UniProt
RGD		 PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1277234 (PMID:15728667)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA		 MGI:1857496|MGI:1857726 (PMID:7555718), (PMID:7555726)
GO_REF:0000107		 RGD
Ensembl		 PMID:7555718 PMID:7555726 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA		 MGI:102778 (PMID:15634706)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:96184|MGI:96207 (PMID:9441667)		 GO_Central
Ensembl
RGD		 PMID:9441667 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:82,599,860...82,643,831
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxa4 homeo box A4 acts_upstream_of_or_within ISO MGI:2150391|MGI:96185|MGI:96208 (PMID:7628700), (PMID:7918106) RGD PMID:7628700 PMID:7918106 NCBI chr 4:82,620,294...82,622,302
Ensembl chr 4:81,289,682...81,291,685 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397|MGI:3723623 (PMID:17417799), (PMID:7901120), (PMID:9603431) RGD PMID:7901120 PMID:9603431 PMID:17417799 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO
IEA		 MGI:96188 (PMID:9784603)
GO_REF:0000107		 RGD
Ensembl		 PMID:9784603 GO_REF:0000107 NCBI chr 4:82,646,342...82,652,449
Ensembl chr 4:81,314,625...81,317,659 		JBrowse link
G Hoxa9 homeobox A9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO
IEA		 MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747)
GO_REF:0000107		 RGD
Ensembl		 PMID:10885747 GO_REF:0000107 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA		 MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747)
GO_REF:0000107		 RGD
Ensembl		 PMID:10885747 GO_REF:0000107 NCBI chr10:81,814,340...81,816,731
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2151773|MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (PMID:10885747), (PMID:9441667)		 GO_Central
Ensembl
RGD		 PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA		 MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7628700)
GO_REF:0000107		 RGD
Ensembl		 PMID:7628700 PMID:10885747 GO_REF:0000107 NCBI chr10:81,781,090...81,783,672
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Hoxb5 homeo box B5 acts_upstream_of_or_within ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7828847) RGD PMID:7828847 PMID:10885747 NCBI chr10:81,765,911...81,768,119
Ensembl chr10:81,269,372...81,271,580 		JBrowse link
G Hoxb6 homeo box B6 acts_upstream_of_or_within ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747) RGD PMID:10885747 NCBI chr10:81,755,263...81,763,999
Ensembl chr10:81,265,056...81,267,449 		JBrowse link
G Hoxb7 homeo box B7 acts_upstream_of_or_within ISO
IEA		 MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9784603)
GO_REF:0000107		 RGD
Ensembl		 PMID:9784603 PMID:10885747 GO_REF:0000107 NCBI chr10:81,749,159...81,752,577
Ensembl chr10:81,252,553...81,256,034 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within ISO MGI:1934178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190 (PMID:10559485), (PMID:10885747) RGD PMID:10559485 PMID:10885747 NCBI chr10:81,745,430...81,747,181
Ensembl chr10:81,248,887...81,250,638 		JBrowse link
G Hoxb9 homeo box B9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:81,733,857...81,737,363
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO
IEA		 MGI:2150685 (PMID:7547473)
GO_REF:0000107		 RGD
Ensembl		 PMID:7547473 GO_REF:0000107 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA		 MGI:96210 (PMID:10642795)
GO_REF:0000107		 RGD
Ensembl		 PMID:10642795 GO_REF:0000107 NCBI chr 3:80,001,947...80,005,156
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within ISO
IEA		 MGI:1857959|MGI:96175 (PMID:7910549), (PMID:7913519)
GO_REF:0000107		 RGD
Ensembl		 PMID:7910549 PMID:7913519 GO_REF:0000107 NCBI chr 3:80,041,598...80,057,700
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2151488|MGI:96176 (PMID:7628700), (PMID:7750651)		 GO_Central
Ensembl
RGD		 PMID:7628700 PMID:7750651 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:80,021,886...80,041,462
Ensembl chr 3:59,614,464...59,631,528 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:96202 (PMID:10642795)		 GO_Central
Ensembl
RGD		 PMID:10642795 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:80,008,006...80,010,186
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (PMID:10579729) RGD PMID:10579729 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO
IEA		 MGI:2155446 (PMID:9799236)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799236 GO_REF:0000107 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24052814)
GO_REF:0000107		 CAFA
RGD
Ensembl		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2683274|MGI:3573783 (PMID:17927973) RGD PMID:17927973 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA		 (PMID:17360777)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:1857219 (PMID:10929709)
GO_REF:0000107		 RGD
Ensembl		 PMID:10929709 GO_REF:0000107 NCBI chr 7:44,689,407...44,692,638
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:3033240 (PMID:15175245)		 UniProt
Ensembl
RGD		 PMID:15175245 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:88174 (PMID:11290297) RGD PMID:11290297 NCBI chr10:83,178,926...83,191,610
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3847257 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,905,734...43,004,740
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857640|MGI:98218 (PMID:11532916), (PMID:7758948), (PMID:9729491), (PMID:9876178)
GO_REF:0000107		 RGD
Ensembl		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:11532916), (PMID:9729491), (PMID:9876178) RGD PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:3692768|MGI:3695425 (PMID:16751105), (PMID:16960803)
GO_REF:0000107		 RGD
Ensembl		 PMID:16751105 PMID:16960803 GO_REF:0000107 NCBI chr 9:65,842,351...66,028,569
Ensembl chr 9:58,350,246...58,530,707 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:106034 (PMID:15788460)
GO_REF:0000107		 RGD
Ensembl		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:96174 (PMID:15634706)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15254231)		 UniProt
Ensembl
RGD		 PMID:15254231 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO
IEA		 MGI:1856015|MGI:95729 (PMID:15728667)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr 2:189,265,373...189,376,466
Ensembl chr 2:186,576,676...186,687,663 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:3038818 (PMID:15030764) RGD PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO MGI:3701350 (PMID:16818445) RGD PMID:16818445 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857799 (PMID:9389660) RGD PMID:9389660 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:22,412,121...22,630,577
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (PMID:9409679) RGD PMID:9409679 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA		 MGI:2385711 (PMID:16221728)
GO_REF:0000107		 RGD
Ensembl		 PMID:16221728 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14695376)		 UniProt
Ensembl
RGD		 PMID:14695376 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA		 (PMID:23267094)
GO_REF:0000107		 RGD
Ensembl		 PMID:23267094 GO_REF:0000107 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3589383 (PMID:16020517)
GO_REF:0000107		 RGD
Ensembl		 PMID:16020517 GO_REF:0000107 NCBI chr18:56,407,308...56,470,007
Ensembl chr18:54,140,779...54,178,191 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4332250 (PMID:19763162)		 GO_Central
Ensembl
RGD		 PMID:19763162 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:14585638)		 UniProt
RGD		 PMID:14585638 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1858007|MGI:2148567|MGI:4418897 (PMID:12194849), (PMID:23824574)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194849 PMID:23824574 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dusp1 dual specificity phosphatase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:17,184,853...17,187,646 JBrowse link
G Dusp4 dual specificity phosphatase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,079,893...64,101,396
Ensembl chr16:57,377,229...57,398,138 		JBrowse link
G Dusp5 dual specificity phosphatase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:262,543,774...262,557,201
Ensembl chr 1:252,538,449...252,551,818 		JBrowse link
G ENSRNOG00000069024 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:16,681,808...16,683,120 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3774028 (PMID:21245162), (PMID:21822279)
GO_REF:0000107
(PMID:18171685)		 RGD
Ensembl		 PMID:18171685 PMID:21245162 PMID:21822279 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179511 (PMID:8582296) RGD PMID:8582296 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857848 (PMID:15355796)		 UniProt
Ensembl
RGD		 PMID:15355796 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2387829 (PMID:17151016)		 GO_Central
Ensembl
RGD		 PMID:17151016 GO_REF:0000033 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:21822279) RGD PMID:21822279 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA
IBA		 (PMID:18682240)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18682240 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO
IEA		 (PMID:18682240)
GO_REF:0000107		 RGD
Ensembl		 PMID:18682240 GO_REF:0000107 NCBI chr15:42,356,405...42,363,166
Ensembl chr15:38,180,503...38,187,264 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (PMID:22187428) RGD PMID:22187428 NCBI chr10:103,367,498...103,478,246
Ensembl chr10:102,868,828...102,978,194 		JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd3 bromodomain containing 3 involved_in ISO
IEA		 (PMID:32895492)
GO_REF:0000107		 RGD
Ensembl		 PMID:32895492 GO_REF:0000107 NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 8:89,427,834...89,545,886
Ensembl chr 8:80,547,593...80,665,686 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr16:84,749,672...84,885,520
Ensembl chr16:78,047,602...78,183,839 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 8:118,483,364...118,515,736
Ensembl chr 8:109,604,861...109,637,252 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:56,245,998...56,378,586
Ensembl chr11:42,777,628...42,906,424 		JBrowse link
G Dab2 DAB adaptor protein 2 acts_upstream_of_or_within ISO MGI:2429678 (PMID:12413896) RGD PMID:12413896 NCBI chr 2:57,241,947...57,294,893
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:2387760 (PMID:18403408) RGD PMID:18403408 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Fn1 fibronectin 1 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:73,196,044...73,264,678 		JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO MGI:2177785 (PMID:9832509) RGD PMID:9832509 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr10:101,380,354...101,448,138
Ensembl chr10:100,869,718...100,949,309 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17624332)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17624332 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:24380799)
GO_REF:0000107		 RGD
Ensembl		 PMID:24380799 GO_REF:0000107 NCBI chr19:64,309,703...64,314,035
Ensembl chr19:47,400,966...47,435,821 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO
IEA		 (PMID:21828274)
GO_REF:0000107		 RGD
Ensembl		 PMID:21828274 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:64,163,085...64,233,715 		JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:134,478,968...134,502,837 		JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 7:1,944,447...1,973,347
Ensembl chr 7:1,359,940...1,388,450 		JBrowse link
G Itgav integrin subunit alpha V involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:80,333,588...80,449,373
Ensembl chr11:66,829,285...66,944,472 		JBrowse link
G Lama3 laminin subunit alpha 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr18:3,797,898...4,033,021
Ensembl chr18:3,523,133...3,751,353 		JBrowse link
G Lamb1 laminin subunit beta 1 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 6:53,562,849...53,630,118
Ensembl chr 6:47,835,525...47,902,585 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr13:107,362,514...107,404,081
Ensembl chr13:104,833,873...104,875,405 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in ISO
IEA		 (PMID:19038793)
GO_REF:0000107		 RGD
Ensembl		 PMID:19038793 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr19:9,669,506...9,691,000
Ensembl chr19:9,663,449...9,684,943 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 8:13,008,873...13,018,729
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Myh9 myosin, heavy chain 9 involved_in IEA
ISO		 GO_REF:0000107
MGI:3522434 (PMID:15292239)		 Ensembl
RGD		 PMID:15292239 GO_REF:0000107 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO
IEA		 (PMID:21741376)
GO_REF:0000107		 RGD
Ensembl		 PMID:21741376 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16466956)
GO_REF:0000107		 RGD
Ensembl		 PMID:16466956 GO_REF:0000107 NCBI chr  X:54,707,658...54,711,786
Ensembl chr  X:50,756,886...50,761,011 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:25242323) RGD PMID:25242323 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of ISO
IEA		 (PMID:17940068)
GO_REF:0000107		 RGD
Ensembl		 PMID:17940068 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Vtn vitronectin involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:63,892,782...63,895,862
Ensembl chr10:63,394,719...63,397,810 		JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:19345177)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:19345177 GO_REF:0000024 GO_REF:0000107 NCBI chr13:57,897,924...58,000,031
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1858007|MGI:2148567 (PMID:12194849)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194849 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO
IEA		 (PMID:19345177)
GO_REF:0000107		 RGD
Ensembl		 PMID:19345177 GO_REF:0000107 NCBI chr 1:174,571,952...174,601,974
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:19345177)		 UniProt
RGD		 PMID:19345177 GO_REF:0000024 NCBI chr 8:85,080,036...85,104,471
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19345177)		 UniProt
Ensembl
RGD		 PMID:19345177 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,811,197...92,816,775
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) involved_in ISO
IEA		 (PMID:19345177)
GO_REF:0000107		 RGD
Ensembl		 PMID:19345177 GO_REF:0000107 NCBI chr 3:127,113,171...127,172,761
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:20308546) RGD PMID:20308546 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 (PMID:20308546)
GO_REF:0000107		 RGD
Ensembl		 PMID:20308546 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:3774028 (PMID:21245162)		 GO_Central
Ensembl
RGD		 PMID:21245162 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA		 MGI:1857856 (PMID:18635606)
GO_REF:0000107		 RGD
Ensembl		 PMID:18635606 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA		 (PMID:21305474)
GO_REF:0000107		 RGD
Ensembl		 PMID:21305474 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21245162)
GO_REF:0000107		 RGD
Ensembl		 PMID:21245162 GO_REF:0000107 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
epiboly involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23063620)		 Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
epithelial cell morphogenesis involved in placental branching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA		 MGI:4340678 (PMID:25758223)
GO_REF:0000107		 RGD
Ensembl		 PMID:25758223 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:1338881|MGI:2156187 (PMID:19592578) RGD PMID:19592578 NCBI chr 1:93,685,637...93,708,091
Ensembl chr 1:84,558,166...84,580,616 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO
IEA		 MGI:1338031 (PMID:19592578)
GO_REF:0000107		 RGD
Ensembl		 PMID:19592578 GO_REF:0000107 NCBI chr 8:37,798,994...37,839,881
Ensembl chr 8:29,540,811...29,581,517 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915838 (PMID:18606138)
GO_REF:0000107		 RGD
Ensembl		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:70,122,474...70,132,756 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857642 (PMID:18606138)
GO_REF:0000107		 RGD
Ensembl		 PMID:18606138 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
establishment or maintenance of polarity of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Llgl2 LLGL scribble cell polarity complex component 2 acts_upstream_of_or_within ISO
IEA		 MGI:4331862 (PMID:21606200)
GO_REF:0000107		 RGD
Ensembl		 PMID:21606200 GO_REF:0000107 NCBI chr10:101,549,911...101,585,466
Ensembl chr10:101,051,408...101,086,525 		JBrowse link
G Pals1 protein associated with LIN7 1, MAGUK p55 family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:103,327,965...103,384,543
Ensembl chr 6:97,548,630...97,653,305 		JBrowse link
G Wnt7b Wnt family member 7B acts_upstream_of_or_within ISO MGI:3793280 (PMID:19060336) RGD PMID:19060336 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
floor plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO
IEA		 MGI:6113512 (PMID:28817564)
GO_REF:0000107		 RGD
Ensembl		 PMID:28817564 GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:701,124...707,826 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:4363468 (PMID:23351563) RGD PMID:23351563 NCBI chr10:12,094,346...12,159,440
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:9636069), (PMID:9655799) RGD PMID:9636069 PMID:9655799 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
floor plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:2158732 (PMID:11311163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:3796520 (PMID:18448678) RGD PMID:18448678 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO
IEA		 (PMID:18560595)
GO_REF:0000107		 RGD
Ensembl		 PMID:18560595 GO_REF:0000107 NCBI chr 4:105,818,203...105,850,379
Ensembl chr 4:104,259,992...104,292,168 		JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (PMID:21238925) RGD PMID:21238925 NCBI chr 3:150,428,233...150,707,755
Ensembl chr 3:129,974,800...130,254,019 		JBrowse link
gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857711 (PMID:10226013)
GO_REF:0000107		 RGD
Ensembl		 PMID:10226013 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Apela apelin receptor early endogenous ligand involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:29,460,855...29,469,962
Ensembl chr16:24,694,324...24,703,465 		JBrowse link
G Apln apelin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:132,058,739...132,091,518
Ensembl chr  X:127,203,823...127,213,391 		JBrowse link
G Aplnr apelin receptor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:90,624,055...90,627,700
Ensembl chr 3:70,217,385...70,221,050 		JBrowse link
G Arfrp1 ARF related protein 1 acts_upstream_of_or_within ISO MGI:2159671 (PMID:11839814) RGD PMID:11839814 NCBI chr 3:168,466,351...168,473,960
Ensembl chr 3:168,466,496...168,473,914 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:3796520 (PMID:18448678) RGD PMID:18448678 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO
IEA		 MGI:6157645 (PMID:28911199)
GO_REF:0000107		 RGD
Ensembl		 PMID:28911199 GO_REF:0000107 NCBI chr 1:192,250,580...192,257,347
Ensembl chr 1:182,820,141...182,826,907 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA		 MGI:98658 (PMID:18241853)
GO_REF:0000107		 RGD
Ensembl		 PMID:18241853 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within ISO
IEA		 MGI:2651546 (PMID:10500095)
GO_REF:0000107		 RGD
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr 9:89,040,987...89,118,775
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within ISO
IEA		 MGI:2182403 (PMID:9405644)
GO_REF:0000107		 RGD
Ensembl		 PMID:9405644 GO_REF:0000107 NCBI chr 6:53,631,686...53,655,059
Ensembl chr 6:47,903,914...47,924,795 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 ISO
IEA		 MGI:1888710 (PMID:10926768), (PMID:20080592)
GO_REF:0000107		 RGD
Ensembl		 PMID:10926768 PMID:20080592 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Hira histone cell cycle regulator acts_upstream_of_or_within ISO MGI:2178130 (PMID:11884616) RGD PMID:11884616 NCBI chr11:95,528,831...95,637,565
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180|MGI:1857722|MGI:2177743 (PMID:7550343), (PMID:7618107), (PMID:7774020) RGD PMID:7550343 PMID:7618107 PMID:7774020 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lmbrd1 LMBR1 domain containing 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000043
(PMID:27061115)		 UniProt
RGD		 PMID:27061115 GO_REF:0000024 GO_REF:0000043 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:8787751)
GO_REF:0000107		 RGD
Ensembl		 PMID:8787751 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2387828 (PMID:12117810)
GO_REF:0000107		 RGD
Ensembl		 PMID:12117810 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:119,893,672...119,900,357
Ensembl chr 4:118,332,862...118,344,035 		JBrowse link
G Nat8f2 N-acetyltransferase 8 (GCN5-related) family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,319,984...118,323,159
Ensembl chr 4:118,319,988...118,324,395 		JBrowse link
G Nat8f4 N-acetyltransferase 8 (GCN5-related) family member 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,326,092...118,332,591
Ensembl chr 4:118,325,874...118,332,658 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,260,323...118,285,038
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2158732 (PMID:11311163), (PMID:14511481)
GO_REF:0000107
GO_REF:0000117		 RGD
Ensembl
UniProt		 PMID:11311163 PMID:14511481 GO_REF:0000107 GO_REF:0000117 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:13129926)		 UniProt
RGD		 PMID:13129926 GO_REF:0000024 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:75,704,119...75,731,964
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Rbm14 RNA binding motif protein 14 acts_upstream_of_or_within ISO
IEA		 MGI:6455488 (PMID:31794640)
GO_REF:0000107		 RGD
Ensembl		 PMID:31794640 GO_REF:0000107 NCBI chr 1:211,476,298...211,535,077
Ensembl chr 1:202,078,287...202,105,665
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within ISO MGI:2387471|MGI:98834 (PMID:17000767) RGD PMID:17000767 NCBI chr 5:106,417,680...106,420,540
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:108051 (PMID:15183723)
GO_REF:0000107		 RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA		 MGI:1858049 (PMID:9420335)
GO_REF:0000107		 RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 MGI:3717118 (PMID:20123909)
GO_REF:0000107		 RGD
Ensembl		 PMID:20123909 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Supt20h SPT20 homolog, SAGA complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:141,047,479...141,080,656
Ensembl chr 2:138,897,416...138,930,495 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor acts_upstream_of_or_within ISO MGI:3904866 (PMID:22448250) RGD PMID:22448250 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414 		JBrowse link
G Tcf3 transcription factor 3 involved_in ISO UniProtKB:A4IIL6 (PMID:21828274) RGD PMID:21828274 NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:10030593)
GO_REF:0000107		 RGD
Ensembl		 PMID:10030593 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA		 MGI:98159 (PMID:17000767)
GO_REF:0000107		 RGD
Ensembl		 PMID:17000767 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3722092 (PMID:17697936)
GO_REF:0000107		 RGD
Ensembl		 PMID:17697936 GO_REF:0000107 NCBI chr 7:22,717,620...22,802,553
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931734|MGI:3696672 (PMID:17117439)
GO_REF:0000107		 RGD
Ensembl		 PMID:17117439 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA		 MGI:87912 (PMID:10452853)
GO_REF:0000107		 RGD
Ensembl		 PMID:10452853 GO_REF:0000107 NCBI chr 3:53,614,143...53,701,933
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA		 MGI:102806 (PMID:10452853)
GO_REF:0000107		 RGD
Ensembl		 PMID:10452853 GO_REF:0000107 NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Amot angiomotin acts_upstream_of_or_within ISO
IEA		 MGI:2656627 (PMID:12676095)
GO_REF:0000107		 RGD
Ensembl		 PMID:12676095 GO_REF:0000107 NCBI chr  X:113,778,990...113,837,846
Ensembl chr  X:108,984,022...109,041,272 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (PMID:12810603) RGD PMID:12810603 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857678 (PMID:8582267)
GO_REF:0000107		 RGD
Ensembl		 PMID:8582267 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 acts_upstream_of_or_within ISO MGI:4360072 (PMID:19701191) RGD PMID:19701191 NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:89,790,644...89,817,906 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3580390 (PMID:15870281)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443 (PMID:9136933) RGD PMID:9136933 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO
IEA		 MGI:2449177 (PMID:12490556)
GO_REF:0000107		 RGD
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 1:254,813,161...254,838,931
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857848 (PMID:15355796)		 UniProt
Ensembl
RGD		 PMID:15355796 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:15142971)
GO_REF:0000107		 RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315 (PMID:15142971) RGD PMID:15142971 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nat8 N-acetyltransferase 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11397015)		 UniProt
Ensembl
RGD		 PMID:11397015 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:119,836,986...119,837,764
Ensembl chr 4:118,270,954...118,281,763 		JBrowse link
G Nat8b N-acetyltransferase 8B involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,916,909...119,923,544
Ensembl chr 4:118,359,443...118,363,563 		JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,893,672...119,900,357
Ensembl chr 4:118,332,862...118,344,035 		JBrowse link
G Nat8f3 N-acetyltransferase 8 (GCN5-related) family member 3 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,799,258...119,803,476
Ensembl chr 4:118,239,304...118,285,500 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:118,260,323...118,285,038
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1856970 (PMID:14607953)
GO_REF:0000107		 RGD
Ensembl		 PMID:14607953 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 acts_upstream_of_or_within ISO MGI:2667262 (PMID:12805229) RGD PMID:12805229 NCBI chr17:9,317,085...9,431,528
Ensembl chr17:9,315,237...9,425,358 		JBrowse link
G Plpp3 phospholipid phosphatase 3 acts_upstream_of_or_within ISO MGI:2674217 (PMID:12925589) RGD PMID:12925589 NCBI chr 5:125,156,000...125,231,119
Ensembl chr 5:119,927,085...120,002,205 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2653961 (PMID:12589020)
GO_REF:0000107		 RGD
Ensembl		 PMID:12589020 GO_REF:0000107 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857691|MGI:2656539|MGI:2668393 (PMID:15215210)
GO_REF:0000107		 RGD
Ensembl		 PMID:15215210 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO MGI:2449635 (PMID:15489520) RGD PMID:15489520 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:150,780,381...151,259,144 		JBrowse link
G Ugdh UDP-glucose 6-dehydrogenase involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14505572)
MGI:2678264 (PMID:15755804)		 UniProt
Ensembl
RGD		 PMID:14505572 PMID:15755804 GO_REF:0000024 GO_REF:0000107 NCBI chr14:43,202,480...43,226,002
Ensembl chr14:42,848,854...42,872,354 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 acts_upstream_of_or_within ISO
IEA		 MGI:2679766 (PMID:14560010)
GO_REF:0000107		 RGD
Ensembl		 PMID:14560010 GO_REF:0000107 NCBI chr 5:159,036,482...159,057,580
Ensembl chr 5:153,753,569...153,774,609 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Aplnr apelin receptor involved_in ISO
IEA		 (PMID:23603510)
GO_REF:0000107		 RGD
Ensembl		 PMID:23603510 GO_REF:0000107 NCBI chr 3:90,624,055...90,627,700
Ensembl chr 3:70,217,385...70,221,050 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA		 MGI:3578151 (PMID:22554696)
GO_REF:0000107		 RGD
Ensembl		 PMID:22554696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Asb2 ankyrin repeat and SOCS box-containing 2 involved_in ISO (PMID:32179481) RGD PMID:32179481 NCBI chr 6:128,239,550...128,275,833
Ensembl chr 6:122,474,756...122,510,854 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:164,127,304...164,225,088
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA		 (PMID:22693285)
GO_REF:0000107		 RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:118,593,881...118,631,584
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA
IBA		 (PMID:22693285)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:22693285 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,985,283...105,025,813
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO
IEA		 MGI:2179530 (PMID:10521397)
GO_REF:0000107		 RGD
Ensembl		 PMID:10521397 GO_REF:0000107 NCBI chr 9:44,234,997...44,247,846
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (PMID:15750185) RGD PMID:15750185 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:12,094,346...12,159,440
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) RGD PMID:12730124 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA		 (PMID:19944400), (PMID:19944405)
GO_REF:0000107		 RGD
Ensembl		 PMID:19944400 PMID:19944405 GO_REF:0000107 NCBI chr19:64,532,859...64,560,942
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO
IEA		 (PMID:22581229)
GO_REF:0000107		 RGD
Ensembl		 PMID:22581229 GO_REF:0000107 NCBI chr10:88,346,453...88,349,853
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO
IEA		 UniProtKB:Q60838 (PMID:22841628)
GO_REF:0000107		 RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IEA		 UniProtKB:P51141 (PMID:22841628)
GO_REF:0000107		 RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Eng endoglin involved_in ISO (PMID:10348742), (PMID:19703439) RGD PMID:10348742 PMID:19703439 NCBI chr 3:36,332,190...36,370,324
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1857843 (PMID:10411502)
GO_REF:0000107		 RGD
Ensembl		 PMID:10411502 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO
IEA		 (PMID:17286298)
GO_REF:0000107		 RGD
Ensembl		 PMID:17286298 GO_REF:0000107 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO
IEA		 (PMID:15363409)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:110,268,608...110,272,105
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (PMID:15310850) RGD PMID:15310850 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9486664) RGD PMID:9486664 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153823 (PMID:9500551)
GO_REF:0000107		 RGD
Ensembl		 PMID:9500551 GO_REF:0000107 NCBI chr10:42,507,117...42,509,684
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857639 (PMID:9171826)
GO_REF:0000107		 RGD
Ensembl		 PMID:9171826 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:2179429 (PMID:14659802)
GO_REF:0000107		 RGD
Ensembl		 PMID:14659802 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA		 MGI:3829198 (PMID:18930042)
GO_REF:0000107		 RGD
Ensembl		 PMID:18930042 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA		 (PMID:15930098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:172,091,591...172,116,497
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA		 MGI:3707373 (PMID:17027958)
GO_REF:0000107		 RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO
IEA		 (PMID:11517919)
GO_REF:0000107		 RGD
Ensembl		 PMID:11517919 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) RGD PMID:25463925 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2181727 (PMID:10330409) RGD PMID:10330409 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2386948 (PMID:12522123)
GO_REF:0000107		 RGD
Ensembl		 PMID:12522123 GO_REF:0000107 NCBI chr 1:254,033,009...254,034,826
Ensembl chr 1:244,083,873...244,085,690 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO		 GO_REF:0000024
(PMID:16680724)		 UniProt
RGD		 PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:10393122)
GO_REF:0000107		 RGD
Ensembl		 PMID:10393122 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3603514 (PMID:16000382)
GO_REF:0000107		 RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:175,780,441...175,965,157
Ensembl chr 1:166,345,859...166,471,719
Ensembl chr 1:166,345,859...166,471,719 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:1927227 (PMID:16510504), (PMID:7628699), (PMID:9192865)
GO_REF:0000107		 RGD
Ensembl		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:106676 (PMID:16496285)
GO_REF:0000107		 RGD
Ensembl		 PMID:16496285 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA		 UniProtKB:O35516 (PMID:12730124)
GO_REF:0000107		 RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124)		 Ensembl
RGD		 PMID:12730124 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA		 MGI:3053092 (PMID:17884984)
GO_REF:0000107		 RGD
Ensembl		 PMID:17884984 GO_REF:0000107 NCBI chr 4:119,518,663...119,522,902
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA		 (PMID:18371931), (PMID:20007846)
GO_REF:0000107		 RGD
Ensembl		 PMID:18371931 PMID:20007846 GO_REF:0000107 NCBI chr 8:113,500,708...113,541,179
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3777011 (PMID:17573777)
GO_REF:0000107		 RGD
Ensembl		 PMID:17573777 GO_REF:0000107 NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,541,821...5,585,140
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA		 MGI:109284 (PMID:10557208)
GO_REF:0000107		 RGD
Ensembl		 PMID:10557208 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857796 (PMID:10411502), (PMID:10500184)
GO_REF:0000107
(PMID:11517919)		 RGD
Ensembl		 PMID:10411502 PMID:10500184 PMID:11517919 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:108051 (PMID:15183723)
GO_REF:0000107		 RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:11517919)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2179440 (PMID:17610846)
GO_REF:0000107
(PMID:17610846), (PMID:17655922)		 RGD
Ensembl		 PMID:17610846 PMID:17655922 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2385465|MGI:2386742 (PMID:15929941)
GO_REF:0000107		 RGD
Ensembl		 PMID:15929941 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA		 MGI:3512046 (PMID:16155214)
GO_REF:0000107		 RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:3579849|MGI:3580099 (PMID:15843407), (PMID:15901664)
GO_REF:0000107
GO_REF:0000033
(PMID:15843409)		 RGD
Ensembl
GO_Central		 PMID:15843407 PMID:15843409 PMID:15901664 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:2655214|MGI:3769504 (PMID:17460765), (PMID:18723448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17460765 PMID:18723448 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA		 (PMID:17050629)
GO_REF:0000107		 RGD
Ensembl		 PMID:17050629 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4343479|MGI:4456438 (PMID:20178780)
GO_REF:0000107		 RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in ISO
IEA		 (PMID:11440971)
GO_REF:0000107		 RGD
Ensembl		 PMID:11440971 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:1857489 (PMID:16291790)
GO_REF:0000107		 RGD
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (PMID:15384171), (PMID:16496285)		 RGD PMID:9354794 PMID:15384171 PMID:16496285 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1857254 (PMID:15677567), (PMID:18550854), (PMID:19182774)
GO_REF:0000107		 RGD
Ensembl		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr 5:133,823,093...133,837,737
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:27870829) RGD PMID:27870829 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
initiation of neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1354386 (PMID:23824537)
GO_REF:0000107		 RGD
Ensembl		 PMID:23824537 GO_REF:0000107 NCBI chr 1:3,980,801...4,014,029
Ensembl chr 1:2,160,411...2,193,640 		JBrowse link
G Lats2 large tumor suppressor kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:1333883 (PMID:23824537)
GO_REF:0000107		 RGD
Ensembl		 PMID:23824537 GO_REF:0000107 NCBI chr15:35,940,632...35,992,225
Ensembl chr15:31,825,092...31,877,220 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 MGI:3717121 (PMID:21146513)
GO_REF:0000107		 RGD
Ensembl		 PMID:21146513 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:11921339) RGD PMID:11921339 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:3043947 (PMID:23536097)
GO_REF:0000107		 RGD
Ensembl		 PMID:23536097 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2155983|MGI:2155984 (PMID:15543141), (PMID:16145671)
GO_REF:0000107		 RGD
Ensembl		 PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in		 ISS
ISO		 GO_REF:0000024
(PMID:12782355)
(PMID:19639346)		 UniProt
RGD		 PMID:12782355 PMID:19639346 GO_REF:0000024 NCBI chr 4:117,781,444...117,800,103
Ensembl chr 4:116,223,799...116,242,475 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA		 (PMID:24413176)
GO_REF:0000107		 RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:11921339) RGD PMID:11921339 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856229|MGI:1856681|MGI:2665714 (PMID:15925194), (PMID:7610888)
GO_REF:0000107		 RGD
Ensembl		 PMID:7610888 PMID:15925194 GO_REF:0000107 MGI:61210 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (PMID:12842012) RGD PMID:12842012 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:15300250)
GO_REF:0000107
MGI:3511552 (PMID:15353999)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15300250 PMID:15353999 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within ISO
IEA		 MGI:3774038 (PMID:18077337)
GO_REF:0000107		 RGD
Ensembl		 PMID:18077337 GO_REF:0000107 NCBI chr 1:165,898,932...165,905,348
Ensembl chr 1:156,487,279...156,491,476 		JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within ISO
IEA		 MGI:2158742 (PMID:18077337)
GO_REF:0000107		 RGD
Ensembl		 PMID:18077337 GO_REF:0000107 NCBI chr14:42,588,948...42,595,669
Ensembl chr14:42,235,226...42,242,192 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:1952599) RGD PMID:1952599 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA		 MGI:1857275 (PMID:9165353)
GO_REF:0000107		 RGD
Ensembl		 PMID:9165353 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:101927|MGI:2180474 (PMID:12142028), (PMID:16900517)
GO_REF:0000107		 RGD
Ensembl		 PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO
IEA		 MGI:101926 (PMID:16900517)
GO_REF:0000107		 RGD
Ensembl		 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,951,005...35,956,354
Ensembl chr 4:34,984,232...34,991,343 		JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:9,516,429...9,527,061 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO
IEA		 (PMID:10839360)
GO_REF:0000107		 RGD
Ensembl		 PMID:10839360 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (PMID:10471511), (PMID:15817220), (PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1347464|MGI:1859647 (PMID:11062007), (PMID:16691564)
GO_REF:0000107		 RGD
Ensembl		 PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1345138 (PMID:15809037)
GO_REF:0000107		 RGD
Ensembl		 PMID:15809037 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:15328018) RGD PMID:15328018 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153351 (PMID:12194867)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194867 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:10934262) RGD PMID:10934262 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (PMID:16691564) RGD PMID:16691564 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within ISO
IEA		 MGI:2448634 (PMID:12642503)
GO_REF:0000107		 RGD
Ensembl		 PMID:12642503 GO_REF:0000107 NCBI chr10:19,310,466...19,314,405
Ensembl chr10:18,806,308...18,810,231 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:18991062)
GO_REF:0000107		 RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO
IEA		 MGI:108474 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:39,421,355...39,488,369 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:108476 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:70,055,068...70,086,776 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4818492 (PMID:20652952)
GO_REF:0000107		 RGD
Ensembl		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2153826|MGI:2181200 (PMID:11135239), (PMID:21553382)
GO_REF:0000107		 RGD
Ensembl		 PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857634 (PMID:15829521), (PMID:15996652)
GO_REF:0000107		 RGD
Ensembl		 PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,042,434...2,051,814 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:107160|MGI:2154542 (PMID:11748138), (PMID:15363417)
GO_REF:0000107		 RGD
Ensembl		 PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,749,284...195,758,347
Ensembl chr 1:186,319,110...186,326,771 		JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:107159|MGI:1857577 (PMID:15363417), (PMID:9435283)
GO_REF:0000107		 RGD
Ensembl		 PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,743,411...195,745,375
Ensembl chr 1:186,313,063...186,315,201 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA		 MGI:1916289 (PMID:16955138)
GO_REF:0000107		 RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO
IEA		 MGI:2181699 (PMID:10742111)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742111 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:75,304,008...75,501,510 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2680653 (PMID:11226272)		 Ensembl
RGD		 PMID:11226272 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669 		JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 acts_upstream_of_or_within ISO MGI:3618993 (PMID:16437162) RGD PMID:16437162 NCBI chr 5:139,560,366...139,612,212
Ensembl chr 5:134,275,934...134,326,932 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA		 MGI:1856419 (PMID:16325169)
GO_REF:0000107		 RGD
Ensembl		 PMID:16325169 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within ISO
IEA		 MGI:1857036 (PMID:11718241), (PMID:14724386)
GO_REF:0000107		 RGD
Ensembl		 PMID:11718241 PMID:14724386 GO_REF:0000107 NCBI chr10:45,776,907...45,835,473
Ensembl chr10:45,278,737...45,335,340 		JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1856555 (PMID:7493015)		 GO_Central
RGD		 PMID:7493015 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:15389316), (PMID:5795329)
GO_REF:0000107		 RGD
Ensembl		 PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107
MGI:2183171 (PMID:16145671)		 RGD
Ensembl		 PMID:16145671 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO MGI:2137018 (PMID:17616930) RGD PMID:17616930 NCBI chr10:53,398,852...53,597,595
Ensembl chr10:52,899,934...53,085,326 		JBrowse link
G Otop1 otopetrin 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1856638|MGI:2655558 (PMID:12651873)		 GO_Central
Ensembl
RGD		 PMID:12651873 GO_REF:0000033 GO_REF:0000107 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:72,503,592...72,532,497 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2136272|MGI:97451 (PMID:10225993)
GO_REF:0000107		 RGD
Ensembl		 PMID:10225993 GO_REF:0000107 NCBI chr14:100,283,406...100,290,421
Ensembl chr14:96,082,151...96,089,086 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:97450 (PMID:10225993) RGD PMID:10225993 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:109344|MGI:1857673 (PMID:15242798), (PMID:16916509)		 UniProt
RGD		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISO
IEA		 UniProtKB:P32114 (PMID:20727173)
GO_REF:0000107		 RGD
Ensembl		 PMID:20727173 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857425 (PMID:12585968)
GO_REF:0000107		 RGD
Ensembl		 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,390,205...34,392,797 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:98218 (PMID:9729491)
GO_REF:0000107		 RGD
Ensembl		 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO
IEA		 MGI:2679316 (PMID:14534255)
GO_REF:0000107		 RGD
Ensembl		 PMID:14534255 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:42,837,109...43,016,917 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:18606138) RGD PMID:18606138 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:106034 (PMID:15788460)
GO_REF:0000107		 RGD
Ensembl		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:19936227)
GO_REF:0000107		 RGD
Ensembl		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Sobp sine oculis binding protein homolog acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:1856614 (PMID:16962269)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:16962269 GO_REF:0000033 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:46,482,765...46,663,541 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO
IEA		 MGI:3578633|MGI:99604 (PMID:15809037)
GO_REF:0000107		 RGD
Ensembl		 PMID:15809037 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:82,692,143...82,698,009 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (PMID:12913075), (PMID:15084464), (PMID:15652707), (PMID:16600992)		 UniProt
RGD		 PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
IEA		 UniProtKB:Q60707 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:21204207)		 UniProt
RGD		 PMID:21204207 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1857053 (PMID:12140191)		 GO_Central
RGD		 PMID:12140191 GO_REF:0000033 NCBI chr 8:119,728,123...119,743,219
Ensembl chr 8:110,850,034...110,864,803 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO
IEA		 MGI:2450561 (PMID:12588793), (PMID:1927362)
GO_REF:0000107		 RGD
Ensembl		 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:98956 (PMID:15961523)
GO_REF:0000107		 RGD
Ensembl		 PMID:15961523 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:98953 (PMID:15961523)
GO_REF:0000107		 RGD
Ensembl		 PMID:15961523 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 (PMID:18991062)
GO_REF:0000107		 RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS
IEA		 (PMID:10021330)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:10021330 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
labyrinthine layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040695.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr  X:100,449,455...100,452,147 JBrowse link
G Esx1 ESX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153820 (PMID:9806555)
GO_REF:0000107		 RGD
Ensembl		 PMID:9806555 GO_REF:0000107 NCBI chr  X:100,449,298...100,454,452 JBrowse link
G Gjb5 gap junction protein, beta 5 acts_upstream_of_or_within ISO MGI:3769388 (PMID:17961533) RGD PMID:17961533 NCBI chr 5:144,965,133...144,968,051
Ensembl chr 5:139,680,671...139,683,583 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 acts_upstream_of_or_within ISO
IEA		 MGI:1276535 (PMID:20685850)
GO_REF:0000107		 RGD
Ensembl		 PMID:20685850 GO_REF:0000107 NCBI chr 6:32,952,090...33,229,829
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO MGI:1276523 (PMID:20685850) RGD PMID:20685850 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432 (PMID:11124112)
GO_REF:0000107		 RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA		 MGI:3606185 (PMID:28893950)
GO_REF:0000107		 RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:169,506,940...169,508,234
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3521833 (PMID:15569927)
GO_REF:0000107		 RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:11850194)
GO_REF:0000107		 RGD
Ensembl		 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:2148569 (PMID:19686689), (PMID:19805295)
GO_REF:0000107		 RGD
Ensembl		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:1261834 (PMID:19686689) RGD PMID:19686689 NCBI chr 4:47,294,300...47,340,284
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO
IEA		 MGI:98954 (PMID:19686689)
GO_REF:0000107		 RGD
Ensembl		 PMID:19686689 GO_REF:0000107 NCBI chr 2:195,142,573...195,156,945
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
mammary gland bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647 (PMID:11782400)
GO_REF:0000107		 RGD
Ensembl		 PMID:11782400 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:11782400) RGD PMID:11782400 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931734|MGI:3696672 (PMID:10479450), (PMID:17117439)
GO_REF:0000107		 RGD
Ensembl		 PMID:10479450 PMID:17117439 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ahdc1 AT hook, DNA binding motif, containing 1 involved_in ISO (PMID:35585237) RGD PMID:35585237 NCBI chr 5:150,512,182...150,578,804
Ensembl chr 5:145,228,227...145,294,145 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO
IEA		 MGI:6157645 (PMID:28911199)
GO_REF:0000107		 RGD
Ensembl		 PMID:28911199 GO_REF:0000107 NCBI chr 1:192,250,580...192,257,347
Ensembl chr 1:182,820,141...182,826,907 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699), (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 PMID:18462699 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:2137520 (PMID:15843411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15843411 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:2158342 (PMID:17699604)
GO_REF:0000107		 RGD
Ensembl		 PMID:17699604 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO
IEA		 MGI:2158503 (PMID:10772805)
GO_REF:0000107		 RGD
Ensembl		 PMID:10772805 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (PMID:12810603) RGD PMID:12810603 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22072575), (PMID:27870829)		 CAFA
RGD		 PMID:22072575 PMID:27870829 GO_REF:0000024 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Ecsit ECSIT signaling integrator acts_upstream_of_or_within ISO MGI:2683025 (PMID:14633973) RGD PMID:14633973 NCBI chr 8:28,881,594...28,894,443
Ensembl chr 8:20,605,583...20,618,390 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:10716450)
MGI:2182814 (PMID:10716450)		 GO_Central
Ensembl
RGD		 PMID:10716450 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:95,017,980...95,021,582
Ensembl chr 1:85,890,559...85,893,431 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3608690 (PMID:16236767)
GO_REF:0000107		 RGD
Ensembl		 PMID:16236767 GO_REF:0000107 NCBI chr 3:100,120,776...100,253,424
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within ISO
IEA		 MGI:2177275 (PMID:8922529)
GO_REF:0000107		 RGD
Ensembl		 PMID:8922529 GO_REF:0000107 NCBI chr 1:95,965,389...95,996,932
Ensembl chr 1:86,828,216...86,856,086 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153824 (PMID:9500550)
GO_REF:0000107		 RGD
Ensembl		 PMID:9500550 GO_REF:0000107 NCBI chr10:42,507,117...42,509,684
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 acts_upstream_of_or_within ISO MGI:3652899 (PMID:16815997) RGD PMID:16815997 NCBI chr 5:140,908,829...141,234,127
Ensembl chr 5:135,623,742...135,945,905 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,165,914...143,168,520
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Msgn1 mesogenin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:39,631,868...39,632,508
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:1857941 (PMID:9171370)
GO_REF:0000107		 RGD
Ensembl		 PMID:9171370 GO_REF:0000107 NCBI chr14:83,850,894...83,934,263
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:2158732 (PMID:11311163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3043761 (PMID:13129926) RGD PMID:13129926 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO MGI:3604508|MGI:4127173 (PMID:20637190) RGD PMID:20637190 NCBI chr20:11,367,073...11,377,788
Ensembl chr20:11,367,096...11,377,743 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:97592 (PMID:12004056)
GO_REF:0000107		 RGD
Ensembl		 PMID:12004056 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within ISO MGI:2183602 (PMID:12004056) RGD PMID:12004056 NCBI chr10:95,120,537...95,139,028
Ensembl chr10:94,620,039...94,639,041 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) RGD PMID:10477299 NCBI chr 7:110,056,897...110,059,283
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857691 (PMID:15084457)		 UniProt
RGD		 PMID:15084457 GO_REF:0000024 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857696 (PMID:15084457)
GO_REF:0000107		 RGD
Ensembl		 PMID:15084457 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO
IEA		 (PMID:11689706)
GO_REF:0000107		 RGD
Ensembl		 PMID:11689706 GO_REF:0000107 NCBI chr 3:176,667,476...176,671,965
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:11060034), (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 PMID:11060034 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tbx19 T-box transcription factor 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:79,983,935...80,016,219
Ensembl chr13:77,450,849...77,504,163 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 MGI:2447721|MGI:3578143 (PMID:15755804), (PMID:9490412)
GO_REF:0000107		 RGD
Ensembl		 PMID:9490412 PMID:15755804 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tbxt T-box transcription factor T involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tlx2 T-cell leukemia homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857514 (PMID:9550720)
GO_REF:0000107		 RGD
Ensembl		 PMID:9550720 GO_REF:0000107 NCBI chr 4:117,131,516...117,133,359
Ensembl chr 4:115,573,799...115,575,642 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO
IEA		 MGI:103302 (PMID:15843411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15843411 GO_REF:0000107 NCBI chr 9:112,979,972...113,014,315
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3722092 (PMID:17697936)
GO_REF:0000107		 RGD
Ensembl		 PMID:17697936 GO_REF:0000107 NCBI chr 7:22,717,620...22,802,553
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO
IEA		 (PMID:19841259)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841259 GO_REF:0000107 NCBI chr 2:251,590,653...251,705,991
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (PMID:10431240) RGD PMID:10431240 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr16:29,460,855...29,469,962
Ensembl chr16:24,694,324...24,703,465 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA		 MGI:3822451 (PMID:18794329)
GO_REF:0000107		 RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 MGI:1857760 (PMID:7720590)
GO_REF:0000107		 RGD
Ensembl		 PMID:7720590 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) RGD PMID:22556407 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432|MGI:88180 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17624332)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17624332 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Itga3 integrin subunit alpha 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:80,486,998...80,522,548
Ensembl chr10:79,990,161...80,022,118 		JBrowse link
G Itga8 integrin subunit alpha 8 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:75,304,008...75,501,510 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Itgb4 integrin subunit beta 4 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,206,665...101,243,012 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA		 MGI:5448754|MGI:5448825 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO
IEA		 (PMID:23856522)
GO_REF:0000107		 RGD
Ensembl		 PMID:23856522 GO_REF:0000107 NCBI chr10:54,619,520...54,641,014
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of_or_within ISO
IEA		 MGI:109452 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1919200 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:7657163)
GO_REF:0000107		 RGD
Ensembl		 PMID:7657163 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 1:95,017,980...95,021,582
Ensembl chr 1:85,890,559...85,893,431 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:17785448) RGD PMID:17785448 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Hoxa11 homeobox A11 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17785448)		 UniProt
RGD		 PMID:17785448 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 MGI:2447721 (PMID:9490412)
GO_REF:0000107		 RGD
Ensembl		 PMID:9490412 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO
IEA		 (PMID:18171685)
GO_REF:0000107		 RGD
Ensembl		 PMID:18171685 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA		 (PMID:28839193)
GO_REF:0000107		 RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,612,942...2,669,870
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:101948 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
mesonephric duct formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA		 MGI:1857856 (PMID:20040500)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040500 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Mir216a microRNA 216a involved_in ISO MGI:6361469 (PMID:31367007) RGD PMID:31367007 NCBI chr14:102,524,105...102,524,210
Ensembl chr14:102,524,105...102,524,210 		JBrowse link
G Mir216b microRNA 216b involved_in ISO MGI:6361477 (PMID:31367007) RGD PMID:31367007 NCBI chr14:102,513,054...102,513,155
Ensembl chr14:102,513,054...102,513,155 		JBrowse link
G Mir217 microRNA 217 involved_in ISO (PMID:31367007) RGD PMID:31367007 NCBI chr14:106,732,485...106,732,589
Ensembl chr14:102,531,505...102,531,609 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:3526437 (PMID:16054034) RGD PMID:16054034 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:88,635,331...88,657,035 		JBrowse link
mesonephric tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:17300925) RGD PMID:17300925 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:17300925)
GO_REF:0000107		 RGD
Ensembl		 PMID:17300925 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
metanephric nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17314325)		 UniProt
Ensembl
RGD		 PMID:17314325 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:21212101)		 UniProt
Ensembl
RGD		 PMID:21212101 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:21212101)		 UniProt
Ensembl
RGD		 PMID:21212101 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857634 (PMID:16651541)
GO_REF:0000107		 RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:104877 (PMID:11500373)
GO_REF:0000107		 RGD
Ensembl		 PMID:11500373 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11522634) RGD PMID:11522634 NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857637 (PMID:8152482)
GO_REF:0000107		 RGD
Ensembl		 PMID:8152482 GO_REF:0000107 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:2687362 (PMID:19185569)		 Ensembl
RGD		 PMID:19185569 GO_REF:0000107 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:3785162 (PMID:27959908) RGD PMID:27959908 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 acts_upstream_of_or_within ISO MGI:3775095 (PMID:18219393) RGD PMID:18219393 NCBI chr 1:23,991,431...24,235,132
Ensembl chr 1:22,172,275...22,415,976 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574787 (PMID:15630379)
GO_REF:0000107		 RGD
Ensembl		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gsc goosecoid homeobox involved_in ISO
IEA		 (PMID:14973294)
GO_REF:0000107		 RGD
Ensembl		 PMID:14973294 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA		 MGI:102778|MGI:1857530|MGI:2385711 (PMID:15634706), (PMID:15861402), (PMID:16221728)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 PMID:15861402 PMID:16221728 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA		 MGI:1916289 (PMID:16955138)
GO_REF:0000107		 RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (PMID:16330189) RGD PMID:16330189 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:17712420)
GO_REF:0000107		 RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1931319 (PMID:14973294)
GO_REF:0000107		 RGD
Ensembl		 PMID:14973294 GO_REF:0000107 NCBI chr14:73,396,198...73,398,585
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:10080184)		 Ensembl
RGD		 PMID:10080184 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:Q91ZD1 (PMID:19389375)		 UniProt
Ensembl
RGD		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19389375)		 UniProt
Ensembl
RGD		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA		 MGI:3626341 (PMID:16571658)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571658 GO_REF:0000107 NCBI chr 3:81,982,669...82,002,028
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9729491)
GO_REF:0000107		 RGD
Ensembl		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO MGI:1861228 (PMID:21062742) RGD PMID:21062742 NCBI chr10:100,200,414...100,204,070
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2655195 (PMID:12874121)
GO_REF:0000107		 RGD
Ensembl		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:96174 (PMID:15634706)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:2179190|MGI:2179191|MGI:3619149 (PMID:15652707), (PMID:16600992), (PMID:20501333)		 UniProt
RGD		 PMID:15652707 PMID:16600992 PMID:20501333 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (PMID:17586487) RGD PMID:17586487 NCBI chr18:79,651,256...79,727,662
Ensembl chr18:77,377,394...77,453,509 		JBrowse link
morphogenesis of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:2180721 (PMID:15739227)
GO_REF:0000107		 RGD
Ensembl		 PMID:15739227 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:3045749 (PMID:16102745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16102745 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (PMID:15843416) RGD PMID:15843416 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr14:19,696,925...19,713,427
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 acts_upstream_of_or_within ISO
IEA		 MGI:2657215 (PMID:16607638)
GO_REF:0000107		 RGD
Ensembl		 PMID:16607638 GO_REF:0000107 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Kdf1 keratinocyte differentiation factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24075906)		 UniProt
Ensembl
RGD		 PMID:24075906 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:145,744,753...145,758,150
Ensembl chr 5:145,745,099...145,755,878 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO
IEA		 MGI:1934917 (PMID:16365040)
GO_REF:0000107		 RGD
Ensembl		 PMID:16365040 GO_REF:0000107 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO
IEA		 (PMID:12591245)
GO_REF:0000107		 RGD
Ensembl		 PMID:12591245 GO_REF:0000107 NCBI chr15:61,607,521...61,612,090
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152755 (PMID:8625829)
GO_REF:0000107		 RGD
Ensembl		 PMID:8625829 GO_REF:0000107 NCBI chr12:12,793,957...12,799,156
Ensembl chr12:7,757,865...7,763,064 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:1889322 (PMID:12499390) RGD PMID:12499390 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3044914 (PMID:16511601)		 GO_Central
RGD		 PMID:16511601 GO_REF:0000033 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 acts_upstream_of_or_within ISO (PMID:15687259) RGD PMID:15687259 NCBI chr 1:192,258,992...192,265,903
Ensembl chr 1:182,828,544...182,837,080 		JBrowse link
G Vegfc vascular endothelial growth factor C acts_upstream_of_or_within ISO
IEA		 MGI:3026650 (PMID:14634646)
GO_REF:0000107		 RGD
Ensembl		 PMID:14634646 GO_REF:0000107 NCBI chr16:44,445,293...44,560,887
Ensembl chr16:37,712,262...37,827,848 		JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 involved_in ISO
IEA		 (PMID:18681827)
GO_REF:0000107		 RGD
Ensembl		 PMID:18681827 GO_REF:0000107 NCBI chr 9:60,931,433...60,934,252
Ensembl chr 9:60,930,875...60,935,781 		JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA		 (PMID:19112489)
GO_REF:0000107		 RGD
Ensembl		 PMID:19112489 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA		 (PMID:19112489)
GO_REF:0000107		 RGD
Ensembl		 PMID:19112489 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:15042700)
GO_REF:0000107		 RGD
Ensembl		 PMID:15042700 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
IEA
ISS		 (PMID:10604883)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10604883 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA		 (PMID:21571275)
GO_REF:0000107		 RGD
Ensembl		 PMID:21571275 GO_REF:0000107 NCBI chr 8:55,423,945...55,425,729
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Il10 interleukin 10 involved_in ISO
IEA		 UniProtKB:P06804 (PMID:26808574)
GO_REF:0000107		 RGD
Ensembl		 PMID:26808574 GO_REF:0000107 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il1rn interleukin 1 receptor antagonist involved_in ISO
IEA		 (PMID:2139180)
GO_REF:0000107		 RGD
Ensembl		 PMID:2139180 GO_REF:0000107 NCBI chr 3:27,509,836...27,525,738
Ensembl chr 3:7,111,550...7,127,445 		JBrowse link
G Klf4 KLF transcription factor 4 involved_in ISO
IEA		 (PMID:20551324)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551324 GO_REF:0000107 NCBI chr 5:75,074,107...75,079,182
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Map2k5 mitogen activated protein kinase kinase 5 involved_in IMP PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chr 8:72,520,616...72,748,395
Ensembl chr 8:63,625,221...63,851,983 		JBrowse link
G Mapk7 mitogen-activated protein kinase 7 involved_in ISO
IEA		 UniProtKB:Q62862 (PMID:20551324)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551324 GO_REF:0000107 NCBI chr10:46,669,721...46,675,768
Ensembl chr10:46,170,167...46,176,267 		JBrowse link
G Mbp myelin basic protein involved_in ISO
IEA		 (PMID:22524708)
GO_REF:0000107		 RGD
Ensembl		 PMID:22524708 GO_REF:0000107 NCBI chr18:78,130,652...78,241,174
Ensembl chr18:75,855,878...75,966,404 		JBrowse link
G Mir221 microRNA 221 involved_in ISO (PMID:20110463) RGD PMID:20110463 NCBI chr  X:6,023,182...6,023,290
Ensembl chr  X:3,429,465...3,429,573 		JBrowse link
G Myadm myeloid-associated differentiation marker involved_in ISO
IBA
IEA		 (PMID:23264465)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23264465 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:74,779,616...74,796,752
Ensembl chr 1:65,864,173...65,874,035 		JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in ISO
IEA		 (PMID:27400149)
GO_REF:0000107		 RGD
Ensembl		 PMID:27400149 GO_REF:0000107 NCBI chr 4:154,800,590...154,926,147
Ensembl chr 4:153,128,334...153,253,905 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
negative regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:11401393), (PMID:18393306)
GO_REF:0000107		 RGD
Ensembl		 PMID:11401393 PMID:18393306 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 (PMID:16324690)
GO_REF:0000107		 RGD
Ensembl		 PMID:16324690 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20410206)		 UniProt
RGD		 PMID:20410206 GO_REF:0000024 NCBI chr 5:11,145,950...11,308,622
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1857617 (PMID:18804104)
GO_REF:0000107		 RGD
Ensembl		 PMID:18804104 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
nephron tubule formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1858008 (PMID:17537789)
GO_REF:0000107		 RGD
Ensembl		 PMID:17537789 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO
IEA		 (PMID:11948913)
GO_REF:0000107		 RGD
Ensembl		 PMID:11948913 GO_REF:0000107 NCBI chr 9:76,329,882...76,343,523
Ensembl chr 9:76,329,882...76,343,523 		JBrowse link
neural fold bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Luzp1 leucine zipper protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3818454 (PMID:18801334)
GO_REF:0000107		 RGD
Ensembl		 PMID:18801334 GO_REF:0000107 NCBI chr 5:153,989,570...154,065,071
Ensembl chr 5:148,706,138...148,781,609 		JBrowse link
neural fold elevation formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO
IEA		 UniProtKB:P23359 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO
IEA		 UniProtKB:P49003 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:1857719 (PMID:10328919)
GO_REF:0000107		 RGD
Ensembl		 PMID:10328919 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
neural fold formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO
IEA		 MGI:3574034 (PMID:21246654)
GO_REF:0000107		 RGD
Ensembl		 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:153,890,206...153,993,451 		JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574399 (PMID:15649475)
GO_REF:0000107		 RGD
Ensembl		 PMID:15649475 GO_REF:0000107 NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A acts_upstream_of_or_within ISO (PMID:17565372) RGD PMID:17565372 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,429,578...19,519,587 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:2158732 (PMID:11311163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3522498 (PMID:16423343)
GO_REF:0000107		 RGD
Ensembl		 PMID:16423343 GO_REF:0000107 NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
neural plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177743 (PMID:7774020) RGD PMID:7774020 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
neural plate morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA		 MGI:3578147|MGI:3822451 (PMID:17507402), (PMID:18794329)
GO_REF:0000107		 RGD
Ensembl		 PMID:17507402 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1857843 (PMID:16613831)
GO_REF:0000107		 RGD
Ensembl		 PMID:16613831 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 MGI:1862000 (PMID:16712836)
GO_REF:0000107		 RGD
Ensembl		 PMID:16712836 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 MGI:3042264 (PMID:15384171)
GO_REF:0000107		 RGD
Ensembl		 PMID:15384171 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO
IEA		 MGI:87860 (PMID:9883720)
GO_REF:0000107		 RGD
Ensembl		 PMID:9883720 GO_REF:0000107 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87859 (PMID:9883720) RGD PMID:9883720 NCBI chr13:71,223,902...71,319,770
Ensembl chr13:68,673,722...68,839,742 		JBrowse link
G Adm adrenomedullin acts_upstream_of_or_within ISO MGI:2176598 (PMID:16981008) RGD PMID:16981008 NCBI chr 1:174,164,178...174,182,372
Ensembl chr 1:164,745,466...164,747,654 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857553 (PMID:8673125)
GO_REF:0000107		 RGD
Ensembl		 PMID:8673125 GO_REF:0000107 NCBI chr 7:40,044,185...40,063,778
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1888997 (PMID:11504943), (PMID:9216040)
GO_REF:0000107		 RGD
Ensembl		 PMID:9216040 PMID:11504943 GO_REF:0000107 NCBI chr 7:27,381,392...27,466,772
Ensembl chr 7:25,494,609...25,579,540 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO
IEA		 MGI:2448591 (PMID:11044403)
GO_REF:0000107		 RGD
Ensembl		 PMID:11044403 GO_REF:0000107 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO
IEA		 MGI:3055492 (PMID:16170314)
GO_REF:0000107		 RGD
Ensembl		 PMID:16170314 GO_REF:0000107 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bcl10 BCL10, immune signaling adaptor involved_in ISS
IEA
ISO		 PMID:11163238
GO_REF:0000107
(PMID:11163238)		 Ensembl
RGD		 PMID:11163238 PMID:11163238 GO_REF:0000107, RGD:734638 NCBI chr 2:237,501,181...237,510,821
Ensembl chr 2:234,840,858...234,850,523 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:19850029)
GO_REF:0000107		 RGD
Ensembl		 PMID:19850029 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Brd2 bromodomain containing 2 acts_upstream_of_or_within ISO
IEA		 MGI:3840071 (PMID:19362612)
GO_REF:0000107		 RGD
Ensembl		 PMID:19362612 GO_REF:0000107 NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO
IEA		 MGI:5708063 (PMID:24947469)
GO_REF:0000107		 RGD
Ensembl		 PMID:24947469 GO_REF:0000107 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO
IEA		 MGI:6113512 (PMID:28817564)
GO_REF:0000107		 RGD
Ensembl		 PMID:28817564 GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:701,124...707,826 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO
IEA		 MGI:2135272|MGI:3574034|MGI:4829945 (PMID:15640247), (PMID:20589882), (PMID:21246654)
GO_REF:0000107		 RGD
Ensembl		 PMID:15640247 PMID:20589882 PMID:21246654 GO_REF:0000107 NCBI chr 4:155,562,576...155,670,253
Ensembl chr 4:153,890,206...153,993,451 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within
involved_in		 ISO MGI:107926|MGI:2135272 (PMID:17229766)
(PMID:12842012)		 RGD PMID:12842012 PMID:17229766 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2385355 (PMID:12149478) RGD PMID:12149478 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:12,094,346...12,159,440
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:14512015)
GO_REF:0000107		 RGD
Ensembl		 PMID:14512015 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14966286)		 UniProt
Ensembl
RGD		 PMID:14966286 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:205,831,428...205,865,106
Ensembl chr 1:196,401,857...196,435,541 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO MGI:3529997 (PMID:15710412) RGD PMID:15710412 NCBI chr16:61,954,177...62,374,819
Ensembl chr16:55,291,584...55,671,439 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2429760 (PMID:12421720)
GO_REF:0000107		 RGD
Ensembl		 PMID:12421720 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Enah ENAH, actin regulator acts_upstream_of_or_within ISO MGI:109268|MGI:97549 (PMID:10069337), (PMID:15371503) RGD PMID:10069337 PMID:15371503 NCBI chr13:96,149,437...96,269,841
Ensembl chr13:93,626,944...93,740,955 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO
IEA
ISS		 (PMID:21840926)
GO_REF:0000107
(PMID:19767740), (PMID:21840926)
MGI:4346364 (PMID:19877275)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19767740 PMID:19877275 PMID:21840926 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO
IEA		 MGI:108474 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:39,421,355...39,488,369 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:108476 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:70,055,068...70,086,776 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO
IEA		 MGI:3817643 (PMID:22405651)
GO_REF:0000107		 RGD
Ensembl		 PMID:22405651 GO_REF:0000107 NCBI chr14:2,332,052...2,375,366
Ensembl chr14:2,187,642...2,230,420 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:4331210 (PMID:21262862)
GO_REF:0000107
(PMID:20654612), (PMID:20978075)		 RGD
Ensembl		 PMID:20654612 PMID:20978075 PMID:21262862 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 involved_in ISO
IEA		 (PMID:16949565), (PMID:20654612)
GO_REF:0000107		 RGD
Ensembl		 PMID:16949565 PMID:20654612 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 acts_upstream_of_or_within
involved_in		 ISO MGI:2137552 (PMID:15755804), (PMID:9636176)
(PMID:17442300)		 RGD PMID:9636176 PMID:15755804 PMID:17442300 NCBI chr 6:74,916,803...75,003,408
Ensembl chr 6:69,181,436...69,268,053 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) RGD PMID:19000668 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA		 MGI:3829198 (PMID:18930042)
GO_REF:0000107		 RGD
Ensembl		 PMID:18930042 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA		 MGI:3707373 (PMID:17027958)
GO_REF:0000107		 RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO
IEA		 MGI:3711317 (PMID:17325035)
GO_REF:0000107		 RGD
Ensembl		 PMID:17325035 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) RGD PMID:25463925 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA		 MGI:5448825 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kif20b kinesin family member 20B acts_upstream_of_or_within ISO
IEA		 MGI:3578531 (PMID:15755804)
GO_REF:0000107		 RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 1:241,840,898...241,896,451
Ensembl chr 1:232,428,371...232,483,787 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1890208 (PMID:11719201)
GO_REF:0000107		 RGD
Ensembl		 PMID:11719201 GO_REF:0000107 NCBI chr 3:42,523,345...42,553,646
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lias lipoic acid synthetase acts_upstream_of_or_within ISO
IEA		 MGI:3578174 (PMID:15755804)
GO_REF:0000107		 RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr14:43,230,369...43,247,469
Ensembl chr14:42,876,699...42,893,783 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within
involved_in		 ISO MGI:3035827|MGI:3574586 (PMID:14966285), (PMID:15691703)
(PMID:16949565)		 RGD PMID:14966285 PMID:15691703 PMID:16949565 NCBI chr 2:235,924,574...235,941,609
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24639464)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24639464 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:54,189,308...54,346,708 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:98958 (PMID:19056682)
MGI:1861309|MGI:2673982|MGI:4415718|MGI:98958 (PMID:10545599), (PMID:15469977), (PMID:19653321), (PMID:19795512)		 RGD PMID:10545599 PMID:15469977 PMID:19056682 PMID:19653321 PMID:19795512 MGI:61254 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA		 MGI:4839484 (PMID:20630950)
GO_REF:0000107		 RGD
Ensembl		 PMID:20630950 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:4410614|MGI:4433029 (PMID:19776033), (PMID:23454480)
GO_REF:0000107		 RGD
Ensembl		 PMID:19776033 PMID:23454480 GO_REF:0000107 NCBI chr10:73,152,599...73,167,451
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:23704330) RGD PMID:23704330 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA		 (PMID:23267094)
GO_REF:0000107		 RGD
Ensembl		 PMID:23267094 GO_REF:0000107 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of ISO
IEA		 (PMID:25855017), (PMID:29222906)
GO_REF:0000107		 RGD
Ensembl		 PMID:25855017 PMID:29222906 GO_REF:0000107 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 MGI:1856173|MGI:1862000 (PMID:16712836)
GO_REF:0000107		 RGD
Ensembl		 PMID:16712836 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase acts_upstream_of_or_within ISO
IEA		 MGI:3578528 (PMID:15755804)
GO_REF:0000107		 RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (PMID:15384171) RGD PMID:15384171 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Pfn1 profilin 1 acts_upstream_of_or_within ISO MGI:108360 (PMID:10069337) RGD PMID:10069337 NCBI chr10:55,863,882...55,866,587
Ensembl chr10:55,365,262...55,527,631 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in ISO
IEA		 (PMID:17609112)
GO_REF:0000107
GO_REF:0000104		 RGD
Ensembl
UniProt		 PMID:17609112 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Plxnb2 plexin B2 involved_in ISO
IEA		 (PMID:17554007)
GO_REF:0000107		 RGD
Ensembl		 PMID:17554007 GO_REF:0000107 NCBI chr 7:122,111,917...122,138,201
Ensembl chr 7:120,232,331...120,258,330 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA		 (PMID:21901791)
MGI:5645931 (PMID:25190059)
GO_REF:0000107		 RGD
Ensembl		 PMID:21901791 PMID:25190059 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:97760 (PMID:22007132)
GO_REF:0000107		 RGD
Ensembl		 PMID:22007132 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO
IEA		 MGI:97592 (PMID:22007132)
GO_REF:0000107		 RGD
Ensembl		 PMID:22007132 GO_REF:0000107 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:235,636,885...235,726,198 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857447 (PMID:9262482)
GO_REF:0000107		 RGD
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO
IEA		 MGI:2135272|MGI:3046905|MGI:3640803 (PMID:15229603), (PMID:20704721)
GO_REF:0000107		 RGD
Ensembl		 PMID:15229603 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:14,351,202...14,418,494 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within
involved_in		 ISO MGI:2137533 (PMID:9636176)
(PMID:7720556)		 RGD PMID:7720556 PMID:9636176 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rala RAS like proto-oncogene A involved_in ISO
IEA		 (PMID:23063435)
GO_REF:0000107		 RGD
Ensembl		 PMID:23063435 GO_REF:0000107 NCBI chr17:51,787,682...51,840,738
Ensembl chr17:47,092,207...47,144,063 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:7607067)
GO_REF:0000107		 RGD
Ensembl		 PMID:7607067 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97856 (PMID:7607067)
GO_REF:0000107		 RGD
Ensembl		 PMID:7607067 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a acts_upstream_of_or_within ISO
IEA		 MGI:3029714 (PMID:14749425)
GO_REF:0000107		 RGD
Ensembl		 PMID:14749425 GO_REF:0000107 NCBI chr 1:136,538,782...136,582,763
Ensembl chr 1:127,128,934...127,172,918 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 acts_upstream_of_or_within ISO MGI:1100883|MGI:2135272 (PMID:17229766) RGD PMID:17229766 NCBI chr 6:45,407,823...45,502,773
Ensembl chr 6:39,679,082...39,774,031 		JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO MGI:3043039 (PMID:15384171) RGD PMID:15384171 NCBI chr 6:50,994,581...50,999,447
Ensembl chr 6:45,223,980...45,271,145
Ensembl chr 5:45,223,980...45,271,145 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:2139360 (PMID:16790473) RGD PMID:16790473 NCBI chr19:34,179,316...34,196,278
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:1889585|MGI:3699175 (PMID:16790473)
GO_REF:0000107		 RGD
Ensembl		 PMID:16790473 GO_REF:0000107 NCBI chr 3:177,891,705...177,909,743
Ensembl chr 3:157,474,642...157,490,822 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in
acts_upstream_of_or_within		 ISO (PMID:22095531)
MGI:1889322|MGI:2135272|MGI:5056373 (PMID:20643356), (PMID:21515572)		 RGD PMID:20643356 PMID:21515572 PMID:22095531 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:23760952)
GO_REF:0000107		 RGD
Ensembl		 PMID:23760952 GO_REF:0000107 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:153,154,896...153,173,580 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2135272|MGI:4440621 (PMID:19966784), (PMID:20215345) RGD PMID:19966784 PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Sema4c semaphorin 4C involved_in ISO
IEA		 (PMID:21122816)
GO_REF:0000107		 RGD
Ensembl		 PMID:21122816 GO_REF:0000107 NCBI chr 9:46,287,540...46,298,041
Ensembl chr 9:38,791,670...38,802,128 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:108078 (PMID:19850029)
GO_REF:0000107		 RGD
Ensembl		 PMID:19850029 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:892014 (PMID:19850029)
GO_REF:0000107		 RGD
Ensembl		 PMID:19850029 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO MGI:1889778 (PMID:16249236) RGD PMID:16249236 NCBI chr14:15,383,769...15,681,158
Ensembl chr14:15,099,423...15,396,915 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1338031|MGI:1338881 (PMID:19592578)
GO_REF:0000107		 RGD
Ensembl		 PMID:19592578 GO_REF:0000107 NCBI chr 3:126,685,017...126,697,957
Ensembl chr 3:106,231,444...106,244,119 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:1338033|MGI:1338881|MGI:2156187 (PMID:19592578) RGD PMID:19592578 NCBI chr 1:93,685,637...93,708,091
Ensembl chr 1:84,558,166...84,580,616 		JBrowse link
G St14 ST14 transmembrane serine protease matriptase acts_upstream_of_or_within ISO
IEA		 MGI:1338031|MGI:1338033 (PMID:19592578)
GO_REF:0000107		 RGD
Ensembl		 PMID:19592578 GO_REF:0000107 NCBI chr 8:37,798,994...37,839,881
Ensembl chr 8:29,540,811...29,581,517 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA		 MGI:3512046 (PMID:16155214)
GO_REF:0000107		 RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 MGI:1856158 (PMID:16835439)
GO_REF:0000107		 RGD
Ensembl		 PMID:16835439 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:3763367 (PMID:17868131) RGD PMID:17868131 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:8622766), (PMID:9811866) RGD PMID:8622766 PMID:9811866 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
IEA		 (PMID:7600998)
GO_REF:0000107		 RGD
Ensembl		 PMID:7600998 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA		 (PMID:9217007)
GO_REF:0000107		 RGD
Ensembl		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3698004 (PMID:17082251)
GO_REF:0000107		 RGD
Ensembl		 PMID:17082251 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4456438 (PMID:20178780)
GO_REF:0000107		 RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (PMID:11007897) RGD PMID:11007897 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO MGI:4123844 (PMID:19098426) RGD PMID:19098426 NCBI chr 8:123,076,499...123,129,016
Ensembl chr 8:114,199,187...114,250,807 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:2183146 (PMID:11438694)
GO_REF:0000107		 RGD
Ensembl		 PMID:11438694 GO_REF:0000107 NCBI chr 3:32,367,434...32,416,565
Ensembl chr 3:11,979,729...12,015,674 		JBrowse link
G Tsc2 TSC complex subunit 2 acts_upstream_of_or_within ISO MGI:1926345 (PMID:10096549) RGD PMID:10096549 NCBI chr10:14,125,679...14,160,317
Ensembl chr10:13,621,136...13,655,951 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:3664273 (PMID:19223390)
GO_REF:0000107		 RGD
Ensembl		 PMID:19223390 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:7729687) RGD PMID:7729687 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:105056|MGI:107926|MGI:1100883|MGI:1349164|MGI:1857642|MGI:1918711|MGI:1923799|MGI:2139764|MGI:98958 (PMID:11709546), (PMID:12499390), (PMID:14512015), (PMID:15229603), (PMID:17229766), (PMID:17433286), (PMID:19966784), (PMID:21246654), (PMID:23760952)
GO_REF:0000107		 RGD
Ensembl		 PMID:11709546 PMID:12499390 PMID:14512015 PMID:15229603 PMID:17229766 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Vasp vasodilator-stimulated phosphoprotein involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:108360 (PMID:15371503)		 GO_Central
Ensembl
RGD		 PMID:15371503 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:88,038,026...88,053,783
Ensembl chr 1:78,910,011...78,925,061 		JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within ISO
IEA		 MGI:4367006 (PMID:37509073)
GO_REF:0000107		 RGD
Ensembl		 PMID:37509073 GO_REF:0000107 NCBI chr19:23,076,948...23,082,569
Ensembl chr19:23,077,010...23,082,563 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1298218|MGI:2135272 (PMID:17433286), (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:2387501 (PMID:16598713)
GO_REF:0000107		 RGD
Ensembl		 PMID:16598713 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (PMID:15384171) RGD PMID:15384171 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO MGI:3052154 (PMID:15136147) RGD PMID:15136147 NCBI chr15:105,964,932...105,973,669
Ensembl chr15:99,560,323...99,567,035 		JBrowse link
neural tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Brpf1 bromodomain and PHD finger containing, 1 acts_upstream_of_or_within ISO MGI:5705132 (PMID:27528195) RGD PMID:27528195 NCBI chr 4:146,456,325...146,472,781
Ensembl chr 4:146,456,318...146,472,649 		JBrowse link
G Casp8 caspase 8 acts_upstream_of_or_within ISO MGI:3609638 (PMID:12404118) RGD PMID:12404118 NCBI chr 9:67,747,109...67,806,699
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:11694877) RGD PMID:11694877 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase acts_upstream_of_or_within ISO MGI:2158322 (PMID:11716496) RGD PMID:11716496 NCBI chr 1:182,270,570...182,285,959
Ensembl chr 1:172,835,188...172,851,158 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA		 MGI:2682066 (PMID:14603322)
GO_REF:0000107		 RGD
Ensembl		 PMID:14603322 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA		 (PMID:15930098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:172,091,591...172,116,497
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ipmk inositol polyphosphate multikinase acts_upstream_of_or_within ISO MGI:3583918 (PMID:15939867) RGD PMID:15939867 NCBI chr20:17,216,151...17,250,826
Ensembl chr20:17,218,037...17,251,705 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 acts_upstream_of_or_within ISO (PMID:16260493) RGD PMID:16260493 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3603514 (PMID:16000382)
GO_REF:0000107		 RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Nup50 nucleoporin 50 acts_upstream_of_or_within ISO
IEA		 MGI:103561|MGI:107532|MGI:2152414|MGI:2385621|MGI:2386173 (PMID:10891500)
GO_REF:0000107		 RGD
Ensembl		 PMID:10891500 GO_REF:0000107 NCBI chr 7:116,047,960...116,065,231
Ensembl chr 7:116,048,021...116,066,905 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA		 (PMID:10500113)
GO_REF:0000107		 RGD
Ensembl		 PMID:10500113 GO_REF:0000107 NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:8124714 RGD:69996 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Stk3 serine/threonine kinase 3 acts_upstream_of_or_within ISO MGI:1929004 (PMID:19786569) RGD PMID:19786569 NCBI chr 7:67,938,341...68,208,472
Ensembl chr 7:66,052,345...66,323,233 		JBrowse link
G Stk4 serine/threonine kinase 4 acts_upstream_of_or_within ISO
IEA		 MGI:1928487 (PMID:19786569)
GO_REF:0000107		 RGD
Ensembl		 PMID:19786569 GO_REF:0000107 NCBI chr 3:173,165,238...173,247,135
Ensembl chr 3:152,745,681...152,827,744 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:3716885 (PMID:16357211)
GO_REF:0000107		 RGD
Ensembl		 PMID:16357211 GO_REF:0000107 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2388066 (PMID:11406614)
GO_REF:0000107		 RGD
Ensembl		 PMID:11406614 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
notochord formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22072575)		 CAFA
RGD		 PMID:22072575 GO_REF:0000024 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Efna1 ephrin A1 acts_upstream_of_or_within ISO MGI:95278 (PMID:11287184) RGD PMID:11287184 NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:174,681,682...174,690,866 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO
IEA		 MGI:103236|MGI:2448472 (PMID:11287184)
GO_REF:0000107		 RGD
Ensembl		 PMID:11287184 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 MGI:1856184 (PMID:7589801)
GO_REF:0000107		 RGD
Ensembl		 PMID:7589801 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
notochord morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO
IEA		 MGI:2448472 (PMID:11287184)
GO_REF:0000107		 RGD
Ensembl		 PMID:11287184 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA		 MGI:5448825 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 (PMID:16916379)
GO_REF:0000107		 RGD
Ensembl		 PMID:16916379 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Ppp1r35 protein phosphatase 1, regulatory subunit 35 involved_in ISO (PMID:32628936) RGD PMID:32628936 NCBI chr12:18,915,909...18,919,253 JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:101948 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
notochord regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO
IEA		 MGI:95728 (PMID:10725236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10725236 GO_REF:0000107 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727 (PMID:10725236) RGD PMID:10725236 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
olfactory placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:19027001)
GO_REF:0000107		 RGD
Ensembl		 PMID:19027001 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:19027001) RGD PMID:19027001 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:1353450 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:11458394) RGD PMID:11458394 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:14623822)
GO_REF:0000107		 RGD
Ensembl		 PMID:14623822 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:17601531)
GO_REF:0000107		 RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (PMID:9435295) RGD PMID:9435295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931124 (PMID:9620767)
GO_REF:0000107		 RGD
Ensembl		 PMID:9620767 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1932522|MGI:2385468 (PMID:18377888)		 UniProt
Ensembl
RGD		 PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,878,006...83,879,174
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:16916509) RGD PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3046793 (PMID:17074316) RGD PMID:17074316 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,907,737...3,923,911
Ensembl chr20:3,903,099...3,919,215 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:5367369) RGD PMID:5367369 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within ISO
IEA		 MGI:2443955 (PMID:24086156)
GO_REF:0000107		 RGD
Ensembl		 PMID:24086156 GO_REF:0000107 NCBI chr 4:128,687,723...128,788,219
Ensembl chr 4:127,130,898...127,231,513 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within ISO
IEA		 MGI:107935 (PMID:24086156)
GO_REF:0000107		 RGD
Ensembl		 PMID:24086156 GO_REF:0000107 NCBI chr 7:63,701,724...63,751,898
Ensembl chr 7:61,816,342...61,866,481 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:4,043,364...4,162,660
Ensembl chr18:3,805,183...3,887,930 		JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574787 (PMID:15630379)
GO_REF:0000107		 RGD
Ensembl		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1346859 (PMID:18952847)
GO_REF:0000107		 RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA		 MGI:3626341 (PMID:16571658)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571658 GO_REF:0000107 NCBI chr 3:81,982,669...82,002,028
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:3619149 (PMID:16600992)		 UniProt
RGD		 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (PMID:17127413) RGD PMID:17127413 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 acts_upstream_of_or_within ISO
IEA		 MGI:4975171 (PMID:9441674)
GO_REF:0000107		 RGD
Ensembl		 PMID:9441674 GO_REF:0000107 NCBI chr 4:62,774,896...63,551,541
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1347481 (PMID:11562355)
GO_REF:0000107
(PMID:15196959)		 RGD
Ensembl		 PMID:11562355 PMID:15196959 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (PMID:11562355) RGD PMID:11562355 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO
IEA		 MGI:96770 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr12:47,299,171...47,333,457
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (PMID:16109169) RGD PMID:16109169 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:98504 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:101948 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:9106663) RGD PMID:9106663 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:1857489 (PMID:9126297)
GO_REF:0000107		 RGD
Ensembl		 PMID:9126297 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
pericardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp5 bone morphogenetic protein 5 involved_in ISO
IEA		 UniProtKB:P23359 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO
IEA		 UniProtKB:P49003 (PMID:10079236)
GO_REF:0000107		 RGD
Ensembl		 PMID:10079236 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15466159)		 Ensembl
RGD		 PMID:15466159 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:98958 (PMID:19056682)
MGI:98958 (PMID:19795512)		 RGD PMID:19056682 PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA		 (PMID:14701881), (PMID:20890042), (PMID:21311046)
GO_REF:0000107		 RGD
Ensembl		 PMID:14701881 PMID:20890042 PMID:21311046 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2155441 (PMID:9030684)
GO_REF:0000107		 RGD
Ensembl		 PMID:9030684 GO_REF:0000107 NCBI chr 6:20,286,117...20,363,350
Ensembl chr 6:14,533,360...14,611,107 		JBrowse link
G Tbx20 T-box transcription factor 20 involved_in ISO
IEA		 (PMID:15901664)
GO_REF:0000107		 RGD
Ensembl		 PMID:15901664 GO_REF:0000107 NCBI chr 8:31,475,963...31,534,051
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone involved_in ISO
IEA		 (PMID:23595991)
GO_REF:0000107		 RGD
Ensembl		 PMID:23595991 GO_REF:0000107 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 (PMID:17940068)
GO_REF:0000107		 RGD
Ensembl		 PMID:17940068 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:11291865)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21281489)		 UniProt
Ensembl
RGD		 PMID:21281489 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO (PMID:21281489) RGD PMID:21281489 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) RGD PMID:10477299 NCBI chr 7:110,056,897...110,059,283
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 involved_in ISO (PMID:15489520) RGD PMID:15489520 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:150,780,381...151,259,144 		JBrowse link
positive regulation of mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir1 microRNA 1 involved_in ISO (PMID:23939491) RGD PMID:23939491 NCBI chr18:2,160,327...2,160,413 JBrowse link
G Mir1a-1 microRNA 1a-1 involved_in ISO (PMID:23939491) RGD PMID:23939491 NCBI chr 3:167,487,117...167,487,201
Ensembl chr 3:167,487,117...167,487,201 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Mir150 microRNA 150 involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 1:104,741,487...104,741,571
Ensembl chr 1:95,605,024...95,605,108 		JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 4:159,209,965...159,210,033 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO
IEA		 (PMID:20559569)
GO_REF:0000107		 RGD
Ensembl		 PMID:20559569 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in ISO
IEA		 (PMID:25677106)
GO_REF:0000107		 RGD
Ensembl		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:30,598,168...30,666,939 		JBrowse link
positive regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA		 (PMID:19112489)
GO_REF:0000107		 RGD
Ensembl		 PMID:19112489 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:8657307)		 UniProt
Ensembl
RGD		 PMID:8657307 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:17300925)
GO_REF:0000107		 RGD
Ensembl		 PMID:17300925 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:17300925) RGD PMID:17300925 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
primary lung bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA		 MGI:2177762 (PMID:16364283)
GO_REF:0000107		 RGD
Ensembl		 PMID:16364283 GO_REF:0000107 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:1891557 (PMID:23552073)
GO_REF:0000107		 RGD
Ensembl		 PMID:23552073 GO_REF:0000107 NCBI chr11:48,491,057...48,507,843
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:11291865)
MGI:1857725 (PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:3612535 (PMID:16368929)
GO_REF:0000107		 RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA		 MGI:4999724|MGI:97359 (PMID:21445260)
GO_REF:0000107		 RGD
Ensembl		 PMID:21445260 GO_REF:0000107 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11291865)
MGI:1857502|MGI:1857848 (PMID:11291865)		 UniProt
Ensembl
RGD		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:96086 (PMID:14511481), (PMID:21445260)		 Ensembl
RGD		 PMID:14511481 PMID:21445260 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in		 ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:4356107 (PMID:19706528)		 Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
proepicardium cell migration involved in pericardium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flrt3 fibronectin leucine rich transmembrane protein 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18448090)		 UniProt
Ensembl
RGD		 PMID:18448090 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:148,448,115...148,461,458
Ensembl chr 3:127,994,226...128,007,841 		JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO
IEA		 MGI:3716756 (PMID:17317769)
GO_REF:0000107		 RGD
Ensembl		 PMID:17317769 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of ISO
IEA		 MGI:1857137 (PMID:11401393)
GO_REF:0000107		 RGD
Ensembl		 PMID:11401393 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:88064 (PMID:12941620)
GO_REF:0000107		 RGD
Ensembl		 PMID:12941620 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:16707121) RGD PMID:16707121 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 MGI:1862000 (PMID:18028901)
GO_REF:0000107		 RGD
Ensembl		 PMID:18028901 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Shh sonic hedgehog signaling molecule NOT|acts_upstream_of_or_within ISO MGI:88064 (PMID:15013801) RGD PMID:15013801 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA		 MGI:1934269 (PMID:11106548)
GO_REF:0000107		 RGD
Ensembl		 PMID:11106548 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:4440619|MGI:4440621 (PMID:19966784) RGD PMID:19966784 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:26496195) RGD PMID:26496195 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha acts_upstream_of_or_within ISO
IEA		 MGI:2158682 (PMID:7958910)
GO_REF:0000107		 RGD
Ensembl		 PMID:7958910 GO_REF:0000107 NCBI chr 3:172,606,220...172,667,758
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1194497|MGI:1915299 (PMID:20040491)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040491 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26496195)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26496195 GO_REF:0000024 GO_REF:0000107 NCBI chr11:75,704,119...75,731,964
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915299|MGI:97359 (PMID:20040491)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040491 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO MGI:1194497|MGI:97359 (PMID:20040491) RGD PMID:20040491 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:168,098,074...168,112,585
Ensembl chr 5:162,815,357...162,828,375 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:95522 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1338938 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1347470 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO
IEA		 MGI:1099809 (PMID:12941620)
GO_REF:0000107		 RGD
Ensembl		 PMID:12941620 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 (PMID:12221011), (PMID:18393306)
GO_REF:0000107		 RGD
Ensembl		 PMID:12221011 PMID:18393306 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
regulation of ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdnf glial cell derived neurotrophic factor involved_in IDA PMID:19112489 UniProt PMID:19112489 RGD:8656008 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
roof plate formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO MGI:2386906 (PMID:10693795) RGD PMID:10693795 NCBI chr 6:31,171,495...31,182,484
Ensembl chr 6:31,178,119...31,182,447 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647 (PMID:15765517)
GO_REF:0000107		 RGD
Ensembl		 PMID:15765517 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:98493 (PMID:19855134)
GO_REF:0000107		 RGD
Ensembl		 PMID:19855134 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:17601531)
GO_REF:0000107		 RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Sparc secreted protein acidic and cysteine rich involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2444748 (PMID:19855134)		 UniProt
RGD		 PMID:19855134 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
IEA		 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16790474)		 UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO
IEA		 (PMID:17875669)
GO_REF:0000107		 RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr 1:33,123,122...33,128,951
Ensembl chr 1:31,294,615...31,300,444 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:32,489,512...32,494,930
Ensembl chr 1:30,660,960...30,666,378 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO
IEA		 (PMID:17875669)
GO_REF:0000107		 RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:15,211,878...15,215,317 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16790474)		 UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 acts_upstream_of_or_within ISO
IEA		 MGI:2651546 (PMID:10500095)
GO_REF:0000107		 RGD
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr 9:89,040,987...89,118,775
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Esrrb estrogen-related receptor beta acts_upstream_of_or_within ISO MGI:1857422 (PMID:9285590) RGD PMID:9285590 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1856970|MGI:2158730 (PMID:11456449)
GO_REF:0000107		 RGD
Ensembl		 PMID:11456449 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
ureteric bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in ISO
IEA		 (PMID:16319112)
GO_REF:0000107		 RGD
Ensembl		 PMID:16319112 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in IEA
ISO		 GO_REF:0000107
(PMID:8657307)		 Ensembl
RGD		 PMID:8657307 GO_REF:0000107 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:17522159) RGD PMID:17522159 NCBI chr 3:120,966,639...120,978,319
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1934916 (PMID:9637690)
GO_REF:0000107		 RGD
Ensembl		 PMID:9637690 GO_REF:0000107 NCBI chr 2:236,168,391...236,302,186
Ensembl chr 2:233,508,021...233,641,769 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:17522159)		 Ensembl
RGD		 PMID:17522159 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO
IEA		 MGI:2679316 (PMID:22357859)
GO_REF:0000107		 RGD
Ensembl		 PMID:22357859 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:42,837,109...43,016,917 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in ISO
IEA		 (PMID:25124451)
GO_REF:0000107		 RGD
Ensembl		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:96,317,849...96,385,195 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure morphogenesis 3018
        embryonic morphogenesis 708
          Malpighian tubule morphogenesis + 0
          auditory receptor cell morphogenesis + 31
          branching involved in labyrinthine layer morphogenesis + 14
          cell morphogenesis involved in semicircular canal fusion 0
          clearance of cells from fusion plate + 0
          cochlea morphogenesis 32
          convergent extension involved in gastrulation + 6
          cotyledon morphogenesis + 0
          dorsal closure, amnioserosa morphology change 0
          dorsal closure, elongation of leading edge cells 0
          embryo sac morphogenesis 0
          embryonic appendage morphogenesis + 148
          embryonic body morphogenesis + 10
          embryonic digit morphogenesis + 73
          embryonic ectodermal digestive tract morphogenesis + 1
          embryonic foregut morphogenesis 11
          embryonic heart tube morphogenesis + 70
          embryonic hindgut morphogenesis + 5
          embryonic nail plate morphogenesis 4
          embryonic neurocranium morphogenesis 10
          embryonic organ morphogenesis + 346
          embryonic placenta morphogenesis + 34
          embryonic retina morphogenesis in camera-type eye 7
          embryonic root morphogenesis 0
          embryonic shoot morphogenesis 0
          embryonic viscerocranium morphogenesis 10
          epiboly involved in gastrulation with mouth forming second + 1
          epithelial cell morphogenesis involved in placental branching 3
          establishment of planar polarity involved in neural tube closure + 3
          floor plate morphogenesis + 4
          gastrulation + 216
          germ-band extension 0
          germ-band shortening 0
          head involution 0
          heart rudiment morphogenesis + 0
          initiation of dorsal closure + 0
          initiation of neural tube closure 1
          inner cell mass cellular morphogenesis 3
          inner ear morphogenesis + 130
          invagination involved in gastrulation with mouth forming second 0
          involution involved in gastrulation with mouth forming second 0
          labyrinthine layer morphogenesis + 29
          lens placode formation + 2
          mesodermal to mesenchymal transition involved in gastrulation + 3
          midbrain-hindbrain boundary morphogenesis + 4
          middle ear morphogenesis 26
          morphogenesis of an epithelial fold involved in embryonic heart tube formation + 0
          morphogenesis of embryonic epithelium + 185
          neural fold bending + 1
          neural fold folding 0
          neural plate elongation + 4
          neural plate thickening 0
          olfactory placode morphogenesis + 4
          optic vesicle morphogenesis + 2
          otolith morphogenesis + 5
          outer ear morphogenesis + 9
          pericardium morphogenesis + 9
          posterior midgut invagination 0
          pouch outgrowth involved in semicircular canal formation 0
          semicircular canal morphogenesis + 10
          suture of dorsal opening 0
          trophectodermal cellular morphogenesis 3
          vestibular receptor cell morphogenesis + 2
          zygote elongation 0
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          embryo development 1381
            embryonic morphogenesis 708
              Malpighian tubule morphogenesis + 0
              auditory receptor cell morphogenesis + 31
              branching involved in labyrinthine layer morphogenesis + 14
              cell morphogenesis involved in semicircular canal fusion 0
              clearance of cells from fusion plate + 0
              cochlea morphogenesis 32
              convergent extension involved in gastrulation + 6
              cotyledon morphogenesis + 0
              dorsal closure, amnioserosa morphology change 0
              dorsal closure, elongation of leading edge cells 0
              embryo sac morphogenesis 0
              embryonic appendage morphogenesis + 148
              embryonic body morphogenesis + 10
              embryonic digit morphogenesis + 73
              embryonic ectodermal digestive tract morphogenesis + 1
              embryonic foregut morphogenesis 11
              embryonic heart tube morphogenesis + 70
              embryonic hindgut morphogenesis + 5
              embryonic nail plate morphogenesis 4
              embryonic neurocranium morphogenesis 10
              embryonic organ morphogenesis + 346
              embryonic placenta morphogenesis + 34
              embryonic retina morphogenesis in camera-type eye 7
              embryonic root morphogenesis 0
              embryonic shoot morphogenesis 0
              embryonic viscerocranium morphogenesis 10
              epiboly involved in gastrulation with mouth forming second + 1
              epithelial cell morphogenesis involved in placental branching 3
              establishment of planar polarity involved in neural tube closure + 3
              floor plate morphogenesis + 4
              gastrulation + 216
              germ-band extension 0
              germ-band shortening 0
              head involution 0
              heart rudiment morphogenesis + 0
              initiation of dorsal closure + 0
              initiation of neural tube closure 1
              inner cell mass cellular morphogenesis 3
              inner ear morphogenesis + 130
              invagination involved in gastrulation with mouth forming second 0
              involution involved in gastrulation with mouth forming second 0
              labyrinthine layer morphogenesis + 29
              lens placode formation + 2
              mesodermal to mesenchymal transition involved in gastrulation + 3
              midbrain-hindbrain boundary morphogenesis + 4
              middle ear morphogenesis 26
              morphogenesis of an epithelial fold involved in embryonic heart tube formation + 0
              morphogenesis of embryonic epithelium + 185
              neural fold bending + 1
              neural fold folding 0
              neural plate elongation + 4
              neural plate thickening 0
              olfactory placode morphogenesis + 4
              optic vesicle morphogenesis + 2
              otolith morphogenesis + 5
              outer ear morphogenesis + 9
              pericardium morphogenesis + 9
              posterior midgut invagination 0
              pouch outgrowth involved in semicircular canal formation 0
              semicircular canal morphogenesis + 10
              suture of dorsal opening 0
              trophectodermal cellular morphogenesis 3
              vestibular receptor cell morphogenesis + 2
              zygote elongation 0
paths to the root