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ONTOLOGY REPORT - ANNOTATIONS

Term:gastrulation
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Accession:GO:0007369 term browser browse the term
Definition:A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
Synonyms:xref: Reactome:R-HSA-9758941 "Gastrulation";   Wikipedia:Gastrulation


show annotations for term's descendants           Sort by:
gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857711 (PMID:10226013)
GO_REF:0000107		 RGD
Ensembl		 PMID:10226013 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Apela apelin receptor early endogenous ligand involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:29,460,855...29,469,962
Ensembl chr16:24,694,324...24,703,465 		JBrowse link
G Apln apelin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:132,058,739...132,091,518
Ensembl chr  X:127,203,823...127,213,391 		JBrowse link
G Aplnr apelin receptor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:90,624,055...90,627,700
Ensembl chr 3:70,217,385...70,221,050 		JBrowse link
G Arfrp1 ARF related protein 1 acts_upstream_of_or_within ISO MGI:2159671 (PMID:11839814) RGD PMID:11839814 NCBI chr 3:168,466,351...168,473,960
Ensembl chr 3:168,466,496...168,473,914 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:3796520 (PMID:18448678) RGD PMID:18448678 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO
IEA		 MGI:6157645 (PMID:28911199)
GO_REF:0000107		 RGD
Ensembl		 PMID:28911199 GO_REF:0000107 NCBI chr 1:192,250,580...192,257,347
Ensembl chr 1:182,820,141...182,826,907 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA		 MGI:98658 (PMID:18241853)
GO_REF:0000107		 RGD
Ensembl		 PMID:18241853 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within ISO
IEA		 MGI:2651546 (PMID:10500095)
GO_REF:0000107		 RGD
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr 9:89,040,987...89,118,775
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Dld dihydrolipoamide dehydrogenase acts_upstream_of_or_within ISO
IEA		 MGI:2182403 (PMID:9405644)
GO_REF:0000107		 RGD
Ensembl		 PMID:9405644 GO_REF:0000107 NCBI chr 6:53,631,686...53,655,059
Ensembl chr 6:47,903,914...47,924,795 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 ISO
IEA		 MGI:1888710 (PMID:10926768), (PMID:20080592)
GO_REF:0000107		 RGD
Ensembl		 PMID:10926768 PMID:20080592 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Hira histone cell cycle regulator acts_upstream_of_or_within ISO MGI:2178130 (PMID:11884616) RGD PMID:11884616 NCBI chr11:95,528,831...95,637,565
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180|MGI:1857722|MGI:2177743 (PMID:7550343), (PMID:7618107), (PMID:7774020) RGD PMID:7550343 PMID:7618107 PMID:7774020 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lmbrd1 LMBR1 domain containing 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000043
(PMID:27061115)		 UniProt
RGD		 PMID:27061115 GO_REF:0000024 GO_REF:0000043 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:8787751)
GO_REF:0000107		 RGD
Ensembl		 PMID:8787751 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2387828 (PMID:12117810)
GO_REF:0000107		 RGD
Ensembl		 PMID:12117810 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:119,893,672...119,900,357
Ensembl chr 4:118,332,862...118,344,035 		JBrowse link
G Nat8f2 N-acetyltransferase 8 (GCN5-related) family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,319,984...118,323,159
Ensembl chr 4:118,319,988...118,324,395 		JBrowse link
G Nat8f4 N-acetyltransferase 8 (GCN5-related) family member 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,326,092...118,332,591
Ensembl chr 4:118,325,874...118,332,658 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,260,323...118,285,038
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2158732 (PMID:11311163), (PMID:14511481)
GO_REF:0000107
GO_REF:0000117		 RGD
Ensembl
UniProt		 PMID:11311163 PMID:14511481 GO_REF:0000107 GO_REF:0000117 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:13129926)		 UniProt
RGD		 PMID:13129926 GO_REF:0000024 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:75,704,119...75,731,964
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Rbm14 RNA binding motif protein 14 acts_upstream_of_or_within ISO
IEA		 MGI:6455488 (PMID:31794640)
GO_REF:0000107		 RGD
Ensembl		 PMID:31794640 GO_REF:0000107 NCBI chr 1:211,476,298...211,535,077
Ensembl chr 1:202,078,287...202,105,665
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within ISO MGI:2387471|MGI:98834 (PMID:17000767) RGD PMID:17000767 NCBI chr 5:106,417,680...106,420,540
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:108051 (PMID:15183723)
GO_REF:0000107		 RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA		 MGI:1858049 (PMID:9420335)
GO_REF:0000107		 RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 MGI:3717118 (PMID:20123909)
GO_REF:0000107		 RGD
Ensembl		 PMID:20123909 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Supt20h SPT20 homolog, SAGA complex component involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:141,047,479...141,080,656
Ensembl chr 2:138,897,416...138,930,495 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor acts_upstream_of_or_within ISO MGI:3904866 (PMID:22448250) RGD PMID:22448250 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414 		JBrowse link
G Tcf3 transcription factor 3 involved_in ISO UniProtKB:A4IIL6 (PMID:21828274) RGD PMID:21828274 NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:10030593)
GO_REF:0000107		 RGD
Ensembl		 PMID:10030593 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA		 MGI:98159 (PMID:17000767)
GO_REF:0000107		 RGD
Ensembl		 PMID:17000767 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3722092 (PMID:17697936)
GO_REF:0000107		 RGD
Ensembl		 PMID:17697936 GO_REF:0000107 NCBI chr 7:22,717,620...22,802,553
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857546 (PMID:9230313)
GO_REF:0000107		 RGD
Ensembl		 PMID:9230313 GO_REF:0000107 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO
IEA		 MGI:2448472 (PMID:11287184)
GO_REF:0000107		 RGD
Ensembl		 PMID:11287184 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 (PMID:14511481)
GO_REF:0000107		 RGD
Ensembl		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin acts_upstream_of_or_within ISO
IEA		 MGI:2656627 (PMID:12676095)
GO_REF:0000107		 RGD
Ensembl		 PMID:12676095 GO_REF:0000107 NCBI chr  X:113,778,990...113,837,846
Ensembl chr  X:108,984,022...109,041,272 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA		 MGI:107405 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr 5:102,352,364...102,355,720
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Gpc3 glypican 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Lefty1 left right determination factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1201414 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr13:95,188,091...95,191,488
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:15142971)
GO_REF:0000107		 RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315 (PMID:15142971) RGD PMID:15142971 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISO
IEA		 (PMID:23063620)
GO_REF:0000107		 RGD
Ensembl		 PMID:23063620 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2387829 (PMID:17151016)
GO_REF:0000107		 RGD
Ensembl		 PMID:17151016 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:3578145 (PMID:16831833)
GO_REF:0000107		 RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 (PMID:15004567)
GO_REF:0000107		 RGD
Ensembl		 PMID:15004567 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 MGI:3717121 (PMID:21146513)
GO_REF:0000107		 RGD
Ensembl		 PMID:21146513 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:2150346 (PMID:10421635)
GO_REF:0000107		 RGD
Ensembl		 PMID:10421635 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:205,364,796...205,371,102
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA		 UniProtKB:Q6AZT7 (PMID:18371931)
GO_REF:0000107		 RGD
Ensembl		 PMID:18371931 GO_REF:0000107 NCBI chr 8:113,500,708...113,541,179
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:106613 (PMID:16571627)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2135272|MGI:2429760|MGI:94941 (PMID:16571627)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:106613|MGI:1857642 (PMID:16571627), (PMID:17229766)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571627 PMID:17229766 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Zfp568 zinc finger protein 568 acts_upstream_of_or_within ISO MGI:3578538 (PMID:18701545) RGD PMID:18701545 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:108078|MGI:1860298 (PMID:18257070)
GO_REF:0000107		 RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685)		 UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:95456 (PMID:25446535)
GO_REF:0000107		 RGD
Ensembl		 PMID:25446535 GO_REF:0000107 NCBI chr 3:110,264,460...110,291,926
Ensembl chr 3:89,797,880...89,836,973 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:1335079 (PMID:25446535)
GO_REF:0000107		 RGD
Ensembl		 PMID:25446535 GO_REF:0000107 NCBI chr11:48,491,057...48,507,843
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1858007|MGI:2148567|MGI:4418897 (PMID:12194849), (PMID:23824574)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194849 PMID:23824574 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dusp1 dual specificity phosphatase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:17,184,853...17,187,646 JBrowse link
G Dusp4 dual specificity phosphatase 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,079,893...64,101,396
Ensembl chr16:57,377,229...57,398,138 		JBrowse link
G Dusp5 dual specificity phosphatase 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:262,543,774...262,557,201
Ensembl chr 1:252,538,449...252,551,818 		JBrowse link
G ENSRNOG00000069024 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:16,681,808...16,683,120 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3774028 (PMID:21245162), (PMID:21822279)
GO_REF:0000107
(PMID:18171685)		 RGD
Ensembl		 PMID:18171685 PMID:21245162 PMID:21822279 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179511 (PMID:8582296) RGD PMID:8582296 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857848 (PMID:15355796)		 UniProt
Ensembl
RGD		 PMID:15355796 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2387829 (PMID:17151016)		 GO_Central
Ensembl
RGD		 PMID:17151016 GO_REF:0000033 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (PMID:21822279) RGD PMID:21822279 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA
IBA		 (PMID:18682240)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18682240 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO
IEA		 (PMID:18682240)
GO_REF:0000107		 RGD
Ensembl		 PMID:18682240 GO_REF:0000107 NCBI chr15:42,356,405...42,363,166
Ensembl chr15:38,180,503...38,187,264 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (PMID:22187428) RGD PMID:22187428 NCBI chr10:103,367,498...103,478,246
Ensembl chr10:102,868,828...102,978,194 		JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd3 bromodomain containing 3 involved_in ISO
IEA		 (PMID:32895492)
GO_REF:0000107		 RGD
Ensembl		 PMID:32895492 GO_REF:0000107 NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 8:89,427,834...89,545,886
Ensembl chr 8:80,547,593...80,665,686 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr16:84,749,672...84,885,520
Ensembl chr16:78,047,602...78,183,839 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr20:11,905,690...11,924,111
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 8:118,483,364...118,515,736
Ensembl chr 8:109,604,861...109,637,252 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:56,245,998...56,378,586
Ensembl chr11:42,777,628...42,906,424 		JBrowse link
G Dab2 DAB adaptor protein 2 acts_upstream_of_or_within ISO MGI:2429678 (PMID:12413896) RGD PMID:12413896 NCBI chr 2:57,241,947...57,294,893
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:2387760 (PMID:18403408) RGD PMID:18403408 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Fn1 fibronectin 1 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:73,196,044...73,264,678 		JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO MGI:2177785 (PMID:9832509) RGD PMID:9832509 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Grb2 growth factor receptor bound protein 2 acts_upstream_of_or_within ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr10:101,380,354...101,448,138
Ensembl chr10:100,869,718...100,949,309 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17624332)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17624332 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:24380799)
GO_REF:0000107		 RGD
Ensembl		 PMID:24380799 GO_REF:0000107 NCBI chr19:64,309,703...64,314,035
Ensembl chr19:47,400,966...47,435,821 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO
IEA		 (PMID:21828274)
GO_REF:0000107		 RGD
Ensembl		 PMID:21828274 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 3:84,569,487...84,646,276
Ensembl chr 3:64,163,085...64,233,715 		JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 7:136,358,097...136,381,305
Ensembl chr 7:134,478,968...134,502,837 		JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 7:1,944,447...1,973,347
Ensembl chr 7:1,359,940...1,388,450 		JBrowse link
G Itgav integrin subunit alpha V involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr11:80,333,588...80,449,373
Ensembl chr11:66,829,285...66,944,472 		JBrowse link
G Lama3 laminin subunit alpha 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr18:3,797,898...4,033,021
Ensembl chr18:3,523,133...3,751,353 		JBrowse link
G Lamb1 laminin subunit beta 1 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 6:53,562,849...53,630,118
Ensembl chr 6:47,835,525...47,902,585 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr13:107,362,514...107,404,081
Ensembl chr13:104,833,873...104,875,405 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in ISO
IEA		 (PMID:19038793)
GO_REF:0000107		 RGD
Ensembl		 PMID:19038793 GO_REF:0000107 NCBI chr13:94,953,907...94,957,938
Ensembl chr13:92,422,031...92,426,065 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr19:9,669,506...9,691,000
Ensembl chr19:9,663,449...9,684,943 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 8:13,008,873...13,018,729
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 3:174,103,474...174,111,434
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Myh9 myosin, heavy chain 9 involved_in IEA
ISO		 GO_REF:0000107
MGI:3522434 (PMID:15292239)		 Ensembl
RGD		 PMID:15292239 GO_REF:0000107 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO
IEA		 (PMID:21741376)
GO_REF:0000107		 RGD
Ensembl		 PMID:21741376 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16466956)
GO_REF:0000107		 RGD
Ensembl		 PMID:16466956 GO_REF:0000107 NCBI chr  X:54,707,658...54,711,786
Ensembl chr  X:50,756,886...50,761,011 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:25242323) RGD PMID:25242323 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of ISO
IEA		 (PMID:17940068)
GO_REF:0000107		 RGD
Ensembl		 PMID:17940068 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Vtn vitronectin involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:63,892,782...63,895,862
Ensembl chr10:63,394,719...63,397,810 		JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:19345177)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:19345177 GO_REF:0000024 GO_REF:0000107 NCBI chr13:57,897,924...58,000,031
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1858007|MGI:2148567 (PMID:12194849)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194849 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO
IEA		 (PMID:19345177)
GO_REF:0000107		 RGD
Ensembl		 PMID:19345177 GO_REF:0000107 NCBI chr 1:174,571,952...174,601,974
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:19345177)		 UniProt
RGD		 PMID:19345177 GO_REF:0000024 NCBI chr 8:85,080,036...85,104,471
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19345177)		 UniProt
Ensembl
RGD		 PMID:19345177 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,811,197...92,816,775
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) involved_in ISO
IEA		 (PMID:19345177)
GO_REF:0000107		 RGD
Ensembl		 PMID:19345177 GO_REF:0000107 NCBI chr 3:127,113,171...127,172,761
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:20308546) RGD PMID:20308546 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 (PMID:20308546)
GO_REF:0000107		 RGD
Ensembl		 PMID:20308546 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:3774028 (PMID:21245162)		 GO_Central
Ensembl
RGD		 PMID:21245162 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA		 MGI:1857856 (PMID:18635606)
GO_REF:0000107		 RGD
Ensembl		 PMID:18635606 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:20713518) RGD PMID:20713518 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO
IEA		 (PMID:21305474)
GO_REF:0000107		 RGD
Ensembl		 PMID:21305474 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21245162)
GO_REF:0000107		 RGD
Ensembl		 PMID:21245162 GO_REF:0000107 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
epiboly involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23063620)		 Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
formation of primary germ layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:3796520 (PMID:18448678) RGD PMID:18448678 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in ISO
IEA		 (PMID:18560595)
GO_REF:0000107		 RGD
Ensembl		 PMID:18560595 GO_REF:0000107 NCBI chr 4:105,818,203...105,850,379
Ensembl chr 4:104,259,992...104,292,168 		JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (PMID:21238925) RGD PMID:21238925 NCBI chr 3:150,428,233...150,707,755
Ensembl chr 3:129,974,800...130,254,019 		JBrowse link
gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931734|MGI:3696672 (PMID:17117439)
GO_REF:0000107		 RGD
Ensembl		 PMID:17117439 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA		 MGI:87912 (PMID:10452853)
GO_REF:0000107		 RGD
Ensembl		 PMID:10452853 GO_REF:0000107 NCBI chr 3:53,614,143...53,701,933
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA		 MGI:102806 (PMID:10452853)
GO_REF:0000107		 RGD
Ensembl		 PMID:10452853 GO_REF:0000107 NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Amot angiomotin acts_upstream_of_or_within ISO
IEA		 MGI:2656627 (PMID:12676095)
GO_REF:0000107		 RGD
Ensembl		 PMID:12676095 GO_REF:0000107 NCBI chr  X:113,778,990...113,837,846
Ensembl chr  X:108,984,022...109,041,272 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (PMID:12810603) RGD PMID:12810603 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857678 (PMID:8582267)
GO_REF:0000107		 RGD
Ensembl		 PMID:8582267 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 acts_upstream_of_or_within ISO MGI:4360072 (PMID:19701191) RGD PMID:19701191 NCBI chr 6:95,526,645...95,538,625
Ensembl chr 6:89,790,644...89,817,906 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3580390 (PMID:15870281)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179443 (PMID:9136933) RGD PMID:9136933 NCBI chr15:41,635,572...41,707,252
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO
IEA		 MGI:2449177 (PMID:12490556)
GO_REF:0000107		 RGD
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 1:254,813,161...254,838,931
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857848 (PMID:15355796)		 UniProt
Ensembl
RGD		 PMID:15355796 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:15142971)
GO_REF:0000107		 RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315 (PMID:15142971) RGD PMID:15142971 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nat8 N-acetyltransferase 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11397015)		 UniProt
Ensembl
RGD		 PMID:11397015 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:119,836,986...119,837,764
Ensembl chr 4:118,270,954...118,281,763 		JBrowse link
G Nat8b N-acetyltransferase 8B involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,916,909...119,923,544
Ensembl chr 4:118,359,443...118,363,563 		JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,893,672...119,900,357
Ensembl chr 4:118,332,862...118,344,035 		JBrowse link
G Nat8f3 N-acetyltransferase 8 (GCN5-related) family member 3 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:119,799,258...119,803,476
Ensembl chr 4:118,239,304...118,285,500 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 involved_in NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:118,260,323...118,285,038
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1856970 (PMID:14607953)
GO_REF:0000107		 RGD
Ensembl		 PMID:14607953 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 acts_upstream_of_or_within ISO MGI:2667262 (PMID:12805229) RGD PMID:12805229 NCBI chr17:9,317,085...9,431,528
Ensembl chr17:9,315,237...9,425,358 		JBrowse link
G Plpp3 phospholipid phosphatase 3 acts_upstream_of_or_within ISO MGI:2674217 (PMID:12925589) RGD PMID:12925589 NCBI chr 5:125,156,000...125,231,119
Ensembl chr 5:119,927,085...120,002,205 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:2653961 (PMID:12589020)
GO_REF:0000107		 RGD
Ensembl		 PMID:12589020 GO_REF:0000107 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857691|MGI:2656539|MGI:2668393 (PMID:15215210)
GO_REF:0000107		 RGD
Ensembl		 PMID:15215210 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 acts_upstream_of_or_within ISO MGI:2449635 (PMID:15489520) RGD PMID:15489520 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:150,780,381...151,259,144 		JBrowse link
G Ugdh UDP-glucose 6-dehydrogenase involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14505572)
MGI:2678264 (PMID:15755804)		 UniProt
Ensembl
RGD		 PMID:14505572 PMID:15755804 GO_REF:0000024 GO_REF:0000107 NCBI chr14:43,202,480...43,226,002
Ensembl chr14:42,848,854...42,872,354 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 acts_upstream_of_or_within ISO
IEA		 MGI:2679766 (PMID:14560010)
GO_REF:0000107		 RGD
Ensembl		 PMID:14560010 GO_REF:0000107 NCBI chr 5:159,036,482...159,057,580
Ensembl chr 5:153,753,569...153,774,609 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1857254 (PMID:15677567), (PMID:18550854), (PMID:19182774)
GO_REF:0000107		 RGD
Ensembl		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 NCBI chr 5:133,823,093...133,837,737
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:27870829) RGD PMID:27870829 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA
ISS		 (PMID:10021330)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10021330 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432 (PMID:11124112)
GO_REF:0000107		 RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA		 MGI:3606185 (PMID:28893950)
GO_REF:0000107		 RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:169,506,940...169,508,234
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931734|MGI:3696672 (PMID:10479450), (PMID:17117439)
GO_REF:0000107		 RGD
Ensembl		 PMID:10479450 PMID:17117439 GO_REF:0000107 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ahdc1 AT hook, DNA binding motif, containing 1 involved_in ISO (PMID:35585237) RGD PMID:35585237 NCBI chr 5:150,512,182...150,578,804
Ensembl chr 5:145,228,227...145,294,145 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO
IEA		 MGI:6157645 (PMID:28911199)
GO_REF:0000107		 RGD
Ensembl		 PMID:28911199 GO_REF:0000107 NCBI chr 1:192,250,580...192,257,347
Ensembl chr 1:182,820,141...182,826,907 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699), (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 PMID:18462699 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:2137520 (PMID:15843411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15843411 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:2158342 (PMID:17699604)
GO_REF:0000107		 RGD
Ensembl		 PMID:17699604 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO
IEA		 MGI:2158503 (PMID:10772805)
GO_REF:0000107		 RGD
Ensembl		 PMID:10772805 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (PMID:12810603) RGD PMID:12810603 NCBI chr11:93,676,400...93,685,584
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:22072575), (PMID:27870829)		 CAFA
RGD		 PMID:22072575 PMID:27870829 GO_REF:0000024 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Ecsit ECSIT signaling integrator acts_upstream_of_or_within ISO MGI:2683025 (PMID:14633973) RGD PMID:14633973 NCBI chr 8:28,881,594...28,894,443
Ensembl chr 8:20,605,583...20,618,390 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:10716450)
MGI:2182814 (PMID:10716450)		 GO_Central
Ensembl
RGD		 PMID:10716450 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr 1:95,017,980...95,021,582
Ensembl chr 1:85,890,559...85,893,431 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3608690 (PMID:16236767)
GO_REF:0000107		 RGD
Ensembl		 PMID:16236767 GO_REF:0000107 NCBI chr 3:100,120,776...100,253,424
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within ISO
IEA		 MGI:2177275 (PMID:8922529)
GO_REF:0000107		 RGD
Ensembl		 PMID:8922529 GO_REF:0000107 NCBI chr 1:95,965,389...95,996,932
Ensembl chr 1:86,828,216...86,856,086 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153824 (PMID:9500550)
GO_REF:0000107		 RGD
Ensembl		 PMID:9500550 GO_REF:0000107 NCBI chr10:42,507,117...42,509,684
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 acts_upstream_of_or_within ISO MGI:3652899 (PMID:16815997) RGD PMID:16815997 NCBI chr 5:140,908,829...141,234,127
Ensembl chr 5:135,623,742...135,945,905 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:143,165,914...143,168,520
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Msgn1 mesogenin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:39,631,868...39,632,508
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:1857941 (PMID:9171370)
GO_REF:0000107		 RGD
Ensembl		 PMID:9171370 GO_REF:0000107 NCBI chr14:83,850,894...83,934,263
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:2158732 (PMID:11311163)
GO_REF:0000107		 RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA		 (PMID:18462699)
GO_REF:0000107		 RGD
Ensembl		 PMID:18462699 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3043761 (PMID:13129926) RGD PMID:13129926 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO MGI:3604508|MGI:4127173 (PMID:20637190) RGD PMID:20637190 NCBI chr20:11,367,073...11,377,788
Ensembl chr20:11,367,096...11,377,743 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:97592 (PMID:12004056)
GO_REF:0000107		 RGD
Ensembl		 PMID:12004056 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within ISO MGI:2183602 (PMID:12004056) RGD PMID:12004056 NCBI chr10:95,120,537...95,139,028
Ensembl chr10:94,620,039...94,639,041 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) RGD PMID:10477299 NCBI chr 7:110,056,897...110,059,283
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857691 (PMID:15084457)		 UniProt
RGD		 PMID:15084457 GO_REF:0000024 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857696 (PMID:15084457)
GO_REF:0000107		 RGD
Ensembl		 PMID:15084457 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO
IEA		 (PMID:11689706)
GO_REF:0000107		 RGD
Ensembl		 PMID:11689706 GO_REF:0000107 NCBI chr 3:176,667,476...176,671,965
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:11060034), (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 PMID:11060034 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tbx19 T-box transcription factor 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:79,983,935...80,016,219
Ensembl chr13:77,450,849...77,504,163 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 MGI:2447721|MGI:3578143 (PMID:15755804), (PMID:9490412)
GO_REF:0000107		 RGD
Ensembl		 PMID:9490412 PMID:15755804 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tbxt T-box transcription factor T involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tlx2 T-cell leukemia homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857514 (PMID:9550720)
GO_REF:0000107		 RGD
Ensembl		 PMID:9550720 GO_REF:0000107 NCBI chr 4:117,131,516...117,133,359
Ensembl chr 4:115,573,799...115,575,642 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO
IEA		 MGI:103302 (PMID:15843411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15843411 GO_REF:0000107 NCBI chr 9:112,979,972...113,014,315
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO
IEA		 MGI:3722092 (PMID:17697936)
GO_REF:0000107		 RGD
Ensembl		 PMID:17697936 GO_REF:0000107 NCBI chr 7:22,717,620...22,802,553
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO
IEA		 (PMID:19841259)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841259 GO_REF:0000107 NCBI chr 2:251,590,653...251,705,991
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (PMID:10431240) RGD PMID:10431240 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apela apelin receptor early endogenous ligand involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr16:29,460,855...29,469,962
Ensembl chr16:24,694,324...24,703,465 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA		 MGI:3822451 (PMID:18794329)
GO_REF:0000107		 RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:33,221,705...33,321,400
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA		 MGI:1857760 (PMID:7720590)
GO_REF:0000107		 RGD
Ensembl		 PMID:7720590 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:22556407) RGD PMID:22556407 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA		 MGI:1929432|MGI:88180 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
IEA
ISS		 (PMID:17624332)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:17624332 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO
IEA		 (PMID:7799920)
GO_REF:0000107		 RGD
Ensembl		 PMID:7799920 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Itga3 integrin subunit alpha 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:80,486,998...80,522,548
Ensembl chr10:79,990,161...80,022,118 		JBrowse link
G Itga8 integrin subunit alpha 8 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:75,304,008...75,501,510 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Itgb4 integrin subunit beta 4 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,206,665...101,243,012 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA		 MGI:5448754|MGI:5448825 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO
IEA		 (PMID:23856522)
GO_REF:0000107		 RGD
Ensembl		 PMID:23856522 GO_REF:0000107 NCBI chr10:54,619,520...54,641,014
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of_or_within ISO
IEA		 MGI:109452 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:10742100)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742100 GO_REF:0000107 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1919200 (PMID:16801560)
GO_REF:0000107		 RGD
Ensembl		 PMID:16801560 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:7657163)
GO_REF:0000107		 RGD
Ensembl		 PMID:7657163 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (PMID:18462699) RGD PMID:18462699 NCBI chr 1:95,017,980...95,021,582
Ensembl chr 1:85,890,559...85,893,431 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:17785448) RGD PMID:17785448 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Hoxa11 homeobox A11 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17785448)		 UniProt
RGD		 PMID:17785448 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA		 (PMID:17785448)
GO_REF:0000107		 RGD
Ensembl		 PMID:17785448 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA		 MGI:2447721 (PMID:9490412)
GO_REF:0000107		 RGD
Ensembl		 PMID:9490412 GO_REF:0000107 NCBI chr 1:190,818,397...190,823,824
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in ISO
IEA		 (PMID:18171685)
GO_REF:0000107		 RGD
Ensembl		 PMID:18171685 GO_REF:0000107 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA		 (PMID:28839193)
GO_REF:0000107		 RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,612,942...2,669,870
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:101948 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 involved_in ISO
IEA		 (PMID:18681827)
GO_REF:0000107		 RGD
Ensembl		 PMID:18681827 GO_REF:0000107 NCBI chr 9:60,931,433...60,934,252
Ensembl chr 9:60,930,875...60,935,781 		JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
IEA
ISS		 (PMID:10604883)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10604883 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA		 (PMID:21571275)
GO_REF:0000107		 RGD
Ensembl		 PMID:21571275 GO_REF:0000107 NCBI chr 8:55,423,945...55,425,729
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Il10 interleukin 10 involved_in ISO
IEA		 UniProtKB:P06804 (PMID:26808574)
GO_REF:0000107		 RGD
Ensembl		 PMID:26808574 GO_REF:0000107 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il1rn interleukin 1 receptor antagonist involved_in ISO
IEA		 (PMID:2139180)
GO_REF:0000107		 RGD
Ensembl		 PMID:2139180 GO_REF:0000107 NCBI chr 3:27,509,836...27,525,738
Ensembl chr 3:7,111,550...7,127,445 		JBrowse link
G Klf4 KLF transcription factor 4 involved_in ISO
IEA		 (PMID:20551324)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551324 GO_REF:0000107 NCBI chr 5:75,074,107...75,079,182
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Map2k5 mitogen activated protein kinase kinase 5 involved_in IMP PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chr 8:72,520,616...72,748,395
Ensembl chr 8:63,625,221...63,851,983 		JBrowse link
G Mapk7 mitogen-activated protein kinase 7 involved_in ISO
IEA		 UniProtKB:Q62862 (PMID:20551324)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551324 GO_REF:0000107 NCBI chr10:46,669,721...46,675,768
Ensembl chr10:46,170,167...46,176,267 		JBrowse link
G Mbp myelin basic protein involved_in ISO
IEA		 (PMID:22524708)
GO_REF:0000107		 RGD
Ensembl		 PMID:22524708 GO_REF:0000107 NCBI chr18:78,130,652...78,241,174
Ensembl chr18:75,855,878...75,966,404 		JBrowse link
G Mir221 microRNA 221 involved_in ISO (PMID:20110463) RGD PMID:20110463 NCBI chr  X:6,023,182...6,023,290
Ensembl chr  X:3,429,465...3,429,573 		JBrowse link
G Myadm myeloid-associated differentiation marker involved_in ISO
IBA
IEA		 (PMID:23264465)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23264465 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:74,779,616...74,796,752
Ensembl chr 1:65,864,173...65,874,035 		JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in ISO
IEA		 (PMID:27400149)
GO_REF:0000107		 RGD
Ensembl		 PMID:27400149 GO_REF:0000107 NCBI chr 4:154,800,590...154,926,147
Ensembl chr 4:153,128,334...153,253,905 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:18593560)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:98956 (PMID:17462603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17462603 GO_REF:0000107 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 acts_upstream_of_or_within ISO
IEA		 MGI:4975171 (PMID:9441674)
GO_REF:0000107		 RGD
Ensembl		 PMID:9441674 GO_REF:0000107 NCBI chr 4:62,774,896...63,551,541
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1347481 (PMID:11562355)
GO_REF:0000107
(PMID:15196959)		 RGD
Ensembl		 PMID:11562355 PMID:15196959 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (PMID:11562355) RGD PMID:11562355 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO
IEA		 MGI:96770 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr12:47,299,171...47,333,457
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (PMID:16109169) RGD PMID:16109169 NCBI chr14:80,070,456...80,219,668
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:98504 (PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:101948 (PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:9106663) RGD PMID:9106663 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:1857489 (PMID:9126297)
GO_REF:0000107		 RGD
Ensembl		 PMID:9126297 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone involved_in ISO
IEA		 (PMID:23595991)
GO_REF:0000107		 RGD
Ensembl		 PMID:23595991 GO_REF:0000107 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16908534)
GO_REF:0000107		 RGD
Ensembl		 PMID:16908534 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA		 (PMID:17940068)
GO_REF:0000107		 RGD
Ensembl		 PMID:17940068 GO_REF:0000107 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:11291865)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21281489)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21281489 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO (PMID:21281489) RGD PMID:21281489 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Otx2 orthodenticle homeobox 2 involved_in ISO (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:10477299) RGD PMID:10477299 NCBI chr 7:110,056,897...110,059,283
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 involved_in ISO (PMID:15489520) RGD PMID:15489520 NCBI chr 1:157,699,611...160,674,549
Ensembl chr 1:150,780,381...151,259,144 		JBrowse link
positive regulation of mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir1 microRNA 1 involved_in ISO (PMID:23939491) RGD PMID:23939491 NCBI chr18:2,160,327...2,160,413 JBrowse link
G Mir1a-1 microRNA 1a-1 involved_in ISO (PMID:23939491) RGD PMID:23939491 NCBI chr 3:167,487,117...167,487,201
Ensembl chr 3:167,487,117...167,487,201 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Mir150 microRNA 150 involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 1:104,741,487...104,741,571
Ensembl chr 1:95,605,024...95,605,108 		JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:23765923) RGD PMID:23765923 NCBI chr 4:159,209,965...159,210,033 JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO
IEA		 (PMID:20559569)
GO_REF:0000107		 RGD
Ensembl		 PMID:20559569 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:1891557 (PMID:23552073)
GO_REF:0000107		 RGD
Ensembl		 PMID:23552073 GO_REF:0000107 NCBI chr11:48,491,057...48,507,843
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:11291865)
MGI:1857725 (PMID:11291865)		 UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:3612535 (PMID:16368929)
GO_REF:0000107		 RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA		 MGI:4999724|MGI:97359 (PMID:21445260)
GO_REF:0000107		 RGD
Ensembl		 PMID:21445260 GO_REF:0000107 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11291865)
MGI:1857502|MGI:1857848 (PMID:11291865)		 UniProt
Ensembl
RGD		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:96086 (PMID:14511481), (PMID:21445260)		 Ensembl
RGD		 PMID:14511481 PMID:21445260 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in		 ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:4356107 (PMID:19706528)		 Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2158696 (PMID:9799237)
GO_REF:0000107		 RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1298218 (PMID:19795512)
GO_REF:0000107		 RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
regulation of gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:26496195) RGD PMID:26496195 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha acts_upstream_of_or_within ISO
IEA		 MGI:2158682 (PMID:7958910)
GO_REF:0000107		 RGD
Ensembl		 PMID:7958910 GO_REF:0000107 NCBI chr 3:172,606,220...172,667,758
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA		 MGI:1194497|MGI:1915299 (PMID:20040491)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040491 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26496195)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26496195 GO_REF:0000024 GO_REF:0000107 NCBI chr11:75,704,119...75,731,964
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915299|MGI:97359 (PMID:20040491)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040491 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO MGI:1194497|MGI:97359 (PMID:20040491) RGD PMID:20040491 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA		 MGI:95522 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1338938 (PMID:16943278)
GO_REF:0000107		 RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1347470 (PMID:17881493)
GO_REF:0000107		 RGD
Ensembl		 PMID:17881493 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure morphogenesis 3018
        embryonic morphogenesis 708
          gastrulation 216
            cell migration involved in gastrulation + 17
            cell-cell adhesion involved in gastrulation + 12
            convergent extension involved in gastrulation + 6
            epithelial cell morphogenesis involved in gastrulation + 0
            formation of primary germ layer + 142
            gastrulation with mouth forming first + 0
            gastrulation with mouth forming second + 37
            mesendoderm migration + 1
            mesodermal to mesenchymal transition involved in gastrulation + 3
            negative regulation of gastrulation 0
            positive regulation of gastrulation 8
            regulation of gastrulation + 14
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          embryo development 1381
            embryonic morphogenesis 708
              gastrulation 216
                cell migration involved in gastrulation + 17
                cell-cell adhesion involved in gastrulation + 12
                convergent extension involved in gastrulation + 6
                epithelial cell morphogenesis involved in gastrulation + 0
                formation of primary germ layer + 142
                gastrulation with mouth forming first + 0
                gastrulation with mouth forming second + 37
                mesendoderm migration + 1
                mesodermal to mesenchymal transition involved in gastrulation + 3
                negative regulation of gastrulation 0
                positive regulation of gastrulation 8
                regulation of gastrulation + 14
paths to the root