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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA 3'-end processing
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Accession:GO:0031123 term browser browse the term
Definition:Any process involved in forming the mature 3' end of an RNA molecule.


show annotations for term's descendants           Sort by:
RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cstf3 cleavage stimulation factor subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077 		JBrowse link
G Papolg poly(A) polymerase gamma involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024 		JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:33,765,949...33,799,405
Ensembl chr 1:33,765,672...33,799,433 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396)
(MGI:4365679|PMID:19701194)		 RGD PMID:19701194 PMID:19703396 MGI:4365679 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:17353264) RGD PMID:17353264 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
box C/D sno(s)RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932 		JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
ISO		 GO_REF:0000024
(MGI:6400674|PMID:32017896)
(PMID:32017898)		 UniProt
RGD		 PMID:32017896 PMID:32017898 GO_REF:0000024 MGI:6400674 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865 		JBrowse link
box H/ACA sno(s)RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:8929409) RGD PMID:8929409 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:29276085) RGD PMID:29276085 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
ISS		 (PMID:29276085)
GO_REF:0000024		 RGD
UniProt		 PMID:29276085 GO_REF:0000024 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in ISO (PMID:7984242) RGD PMID:7984242 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
ISS		 (PMID:29276085)
GO_REF:0000024		 RGD
UniProt		 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO (PMID:19224921) RGD PMID:19224921 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISS
ISO		 GO_REF:0000024
(PMID:20861839)		 UniProt
RGD		 PMID:20861839 GO_REF:0000024 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
ISO		 GO_REF:0000024
(PMID:21102410)		 UniProt
RGD		 PMID:21102410 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:174,140,831...174,168,757
Ensembl chr 1:174,141,993...174,168,665 		JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:131,016,146...131,143,347
Ensembl chr 5:131,016,126...131,143,329 		JBrowse link
G Exosc10 exosome component 10 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:21292163) RGD PMID:21292163 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA		 (PMID:18083837)
GO_REF:0000033		 RGD
GO_Central		 PMID:18083837 GO_REF:0000033 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:19864255)		 UniProt
GO_Central
Ensembl
RGD		 PMID:19864255 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:21593607)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:21593607 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29040705)		 UniProt
Ensembl
RGD		 PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,142...21,091,603
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:11504732)
GO_REF:0000033		 RGD
GO_Central		 PMID:11504732 GO_REF:0000033 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21329879)		 UniProt
Ensembl
RGD		 PMID:21329879 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586 		JBrowse link
G Cpsf4-ps1 cleavage and polyadenylation specific factor 4, pseudogene 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:15,862,098...15,862,850
Ensembl chr  X:15,861,367...15,863,381 		JBrowse link
G Cpsf4l cleavage and polyadenylation specific factor 4-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:98,741,816...98,756,069
Ensembl chr10:98,743,649...98,751,590 		JBrowse link
G Cpsf4l2 cleavage and polyadenylation specific factor 4 like 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:10,211,744...10,213,512
Ensembl chr12:10,211,798...10,212,670 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:21329879)		 UniProt
RGD		 PMID:21329879 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:15937220), (PMID:20695905)		 UniProt
InterPro
RGD		 PMID:15937220 PMID:20695905 GO_REF:0000002 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(PMID:21329879)		 UniProt
RGD		 PMID:21329879 GO_REF:0000024 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO (PMID:7590244) RGD PMID:7590244 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452 		JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15070731)		 UniProt
Ensembl
RGD		 PMID:15070731 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:18288197) RGD PMID:18288197 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Wdr33 WD repeat domain 33 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597 		JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 acts_upstream_of_or_within ISO (PMID:16115198) RGD PMID:16115198 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451 		JBrowse link
G Zcchc8 zinc finger CCHC-type containing 8 involved_in ISO (PMID:31488579) RGD PMID:31488579 NCBI chr12:32,869,170...32,892,707
Ensembl chr12:32,869,310...32,891,325 		JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in ISO
IBA		 (PMID:18688255)
GO_REF:0000033		 RGD
GO_Central		 PMID:18688255 GO_REF:0000033 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IBA		 (PMID:18688255)
GO_REF:0000033
(MGI:4418605|PMID:18955505)		 RGD
GO_Central		 PMID:18688255 PMID:18955505 GO_REF:0000033 MGI:4418605 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:138,365,983...138,375,856
Ensembl chr 5:138,373,119...138,377,505 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IBA		 (MGI:2676509|PMID:12975319)
GO_REF:0000033
(PMID:33230297)		 RGD
GO_Central		 PMID:12975319 PMID:33230297 GO_REF:0000033 MGI:2676509 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944 		JBrowse link
G Slbp stem-loop histone mRNA binding protein involved_in ISO
IBA		 (MGI:4353869|PMID:19470752)
GO_REF:0000033		 RGD
GO_Central		 PMID:19470752 GO_REF:0000033 MGI:4353869 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906 		JBrowse link
G Slbpl stem-loop binding protein like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577 		JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO
IBA		 (PMID:20695905), (PMID:23187700), (PMID:29276085)
GO_REF:0000033		 RGD
GO_Central		 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000033 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:20695905), (PMID:29276085)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:20695905 PMID:29276085 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)		 UniProt
RGD		 PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IMP RGD PMID:34731606 RGD:329845875 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:29799838)		 Ensembl
RGD		 PMID:29799838 GO_REF:0000107 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028 		JBrowse link
poly(A)-dependent snoRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc4 exosome component 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515 		JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP c-mos polyadenylation RGD PMID:15291744 RGD:1578405 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172 		JBrowse link
G Cdc73 cell division cycle 73 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:19136632)		 Ensembl
UniProt
RGD		 PMID:19136632 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS		 (PMID:27940037)
GO_REF:0000024		 RGD
UniProt		 PMID:27940037 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9342333)		 UniProt
RGD		 PMID:9342333 GO_REF:0000024 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO
IEA		 (PMID:9342333)
GO_REF:0000107		 RGD
Ensembl		 PMID:9342333 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
priRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parn poly(A)-specific ribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:47,843,224...47,861,675
Ensembl chr 1:47,843,224...47,861,674 		JBrowse link
regulation of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase-like 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19224921)
GO_REF:0000107		 RGD
Ensembl		 PMID:19224921 GO_REF:0000107 NCBI chr 2:195,294,149...195,328,586
Ensembl chr 2:195,294,153...195,345,815 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISO
IEA		 (PMID:19575011)
GO_REF:0000107
(MGI:5616315|PMID:19575011)		 RGD
Ensembl		 PMID:19575011 GO_REF:0000107 MGI:5616315 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO (PMID:21832157) RGD PMID:21832157 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
RNA 3' uridylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28a lin-28 homolog A involved_in ISO (MGI:6377821|PMID:18951094) RGD PMID:18951094 MGI:6377821 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:33,765,949...33,799,405
Ensembl chr 1:33,765,672...33,799,433 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939), (MGI:6162440|PMID:28671666) RGD PMID:28671666 PMID:28792939 MGI:6162305 MGI:6162440 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:28671666)
(MGI:6162305|PMID:28792939)		 RGD PMID:28671666 PMID:28792939 MGI:6162305 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
rRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3838267|PMID:18438418)		 UniProt
RGD		 PMID:18438418 GO_REF:0000024 MGI:3838267 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
siRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parn poly(A)-specific ribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560 		JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:47,843,224...47,861,675
Ensembl chr 1:47,843,224...47,861,674 		JBrowse link
snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ints12 integrator complex subunit 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:221,591,761...221,609,497
Ensembl chr 2:221,591,682...221,609,497 		JBrowse link
G Ints14 integrator complex subunit 14 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:65,475,788...65,500,807
Ensembl chr 8:65,475,910...65,500,804 		JBrowse link
G Ints2 integrator complex subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:71,031,647...71,079,138
Ensembl chr10:71,031,647...71,079,076 		JBrowse link
G Ints5 integrator complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,788,906...205,793,685
Ensembl chr 1:205,788,906...205,793,685 		JBrowse link
G Ints6 integrator complex subunit 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:36,908,966...37,048,043
Ensembl chr15:36,933,724...37,021,527 		JBrowse link
G Ints6l integrator complex subunit 6 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:134,258,117...134,325,706
Ensembl chr  X:134,258,125...134,309,617 		JBrowse link
G Ints7 integrator complex subunit 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:103,155,123...103,207,953
Ensembl chr13:103,155,090...103,208,592 		JBrowse link
G Ints8 integrator complex subunit 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,295,542...24,344,642
Ensembl chr 5:24,297,191...24,344,740 		JBrowse link
G Ints9 integrator complex subunit 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:39,200,541...39,284,858
Ensembl chr15:39,200,553...39,303,189 		JBrowse link
G Toe1 target of EGR1, exonuclease involved_in ISO
IBA		 (PMID:28092684)
GO_REF:0000033		 RGD
GO_Central		 PMID:28092684 GO_REF:0000033 NCBI chr 5:130,270,484...130,274,050
Ensembl chr 5:130,262,319...130,274,050 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO
ISS		 (PMID:26213367)
GO_REF:0000024		 RGD
UniProt		 PMID:26213367 GO_REF:0000024 NCBI chr19:9,689,313...9,702,306
Ensembl chr19:9,689,316...9,702,302 		JBrowse link
tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 involved_in ISO (PMID:32075755) RGD PMID:32075755 NCBI chr18:67,321,231...67,341,358
Ensembl chr18:67,323,583...67,340,936 		JBrowse link
G Elac2 elaC ribonuclease Z 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G Ptcd1 pentatricopeptide repeat domain 1 involved_in ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr12:9,445,656...9,463,434
Ensembl chr12:9,445,714...9,463,508 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in ISO UniProtKB:P87058 (PMID:10983981) RGD PMID:10983981 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
tRNA 3'-terminal CCA addition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911093 CCA tRNA nucleotidyltransferase 1, mitochondrial-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:170,720,730...170,722,745
Ensembl chr 1:170,721,272...170,722,576 		JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA		 (PMID:25193871), (PMID:25652405), (PMID:29454993), (PMID:30959222), (PMID:31011209), (PMID:32075755), (PMID:34023389)
GO_REF:0000033		 RGD
GO_Central		 PMID:25193871 PMID:25652405 PMID:29454993 PMID:30959222 PMID:31011209 More... GO_REF:0000033 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611 		JBrowse link
U1 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
U2 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO MGI:3663683 (PMID:17544522) RGD PMID:17544522 NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037 		JBrowse link
U4 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575 		JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Exosc4 exosome component 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265 		JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515 		JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
U5 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270 		JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928 		JBrowse link
G Exosc9 exosome component 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051 		JBrowse link
U6 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO
ISS		 (PMID:28589955)
GO_REF:0000024		 RGD
UniProt		 PMID:28589955 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:22899009), (PMID:23022480), (PMID:23190533), (PMID:26213367)		 UniProt
GO_Central
RGD		 PMID:22899009 PMID:23022480 PMID:23190533 PMID:26213367 GO_REF:0000024 GO_REF:0000033 NCBI chr19:9,689,313...9,702,306
Ensembl chr19:9,689,316...9,702,302 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      primary metabolic process 10015
        RNA processing 954
          RNA 3'-end processing 95
            RNA 3' uridylation 5
            co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway + 8
            mRNA 3'-end processing + 45
            mRNA cleavage and polyadenylation specificity factor complex assembly 0
            mitochondrial RNA 3'-end processing + 7
            rRNA 3'-end processing + 12
            regulatory ncRNA 3'-end processing + 2
            snRNA 3'-end processing + 21
            sno(s)RNA 3'-end processing + 12
            tRNA 3'-end processing + 8
Path 2
Term Annotations click to browse term
  biological_process 19692
    cellular process 18168
      cellular metabolic process 9554
        cellular biosynthetic process 7752
          macromolecule biosynthetic process 7210
            nucleic acid biosynthetic process 4203
              RNA biosynthetic process 4090
                RNA processing 954
                  RNA 3'-end processing 95
                    RNA 3' uridylation 5
                    co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway + 8
                    mRNA 3'-end processing + 45
                    mRNA cleavage and polyadenylation specificity factor complex assembly 0
                    mitochondrial RNA 3'-end processing + 7
                    rRNA 3'-end processing + 12
                    regulatory ncRNA 3'-end processing + 2
                    snRNA 3'-end processing + 21
                    sno(s)RNA 3'-end processing + 12
                    tRNA 3'-end processing + 8
paths to the root