ONTOLOGY REPORT - ANNOTATIONS
Term: RNA biosynthetic process
Accession: GO:0032774
browse the term
Definition: The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. Refers not only to transcription but also to e.g. viral RNA replication.
Comment: Note that, in some cases, viral RNA replication and viral transcription from RNA actually refer to the same process, but may be called differently depending on the focus of a specific research study.
Synonyms: exact_synonym: RNA anabolism; RNA biosynthesis; RNA formation; RNA synthesis
narrow_synonym: double-stranded RNA biosynthesis; double-stranded RNA biosynthetic process; dsRNA biosynthesis; dsRNA biosynthetic process
alt_id: GO:0062103
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Helb
DNA helicase B
involved_in
ISO
(PMID:12181327)
RGD
PMID:12181327
NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
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Pola1
DNA polymerase alpha 1, catalytic subunit
involved_in
ISO IEA ISS
(PMID:2175912), (PMID:27019227), (PMID:8026492) (MGI:6478526|PMID:8026492) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:2175912 PMID:8026492 PMID:27019227
GO_REF:0000024 GO_REF:0000107 MGI:6478526
NCBI chr X:58,034,617...58,348,612
Ensembl chr X:58,034,619...58,348,536
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Pola2
DNA polymerase alpha 2, accessory subunit
involved_in
ISO IEA
(PMID:8026492) GO_REF:0000107 (MGI:6478526|PMID:8026492)
RGD Ensembl
PMID:8026492
GO_REF:0000107 MGI:6478526
NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
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Polrmt
RNA polymerase mitochondrial
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
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Prim1
DNA primase subunit 1
involved_in
ISO
(MGI:6478526|PMID:8026492) (PMID:26975377), (PMID:8026492)
RGD
PMID:8026492 PMID:26975377
MGI:6478526
NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
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Prim2
DNA primase subunit 2
involved_in
ISO IBA IEA
(PMID:8026492) PMID:21873635 (MGI:6478526|PMID:8026492) GO_REF:0000043
RGD UniProt
PMID:8026492 PMID:21873635
GO_REF:0000043 MGI:6478526 , RGD:13792537
NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
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Primpol
primase and DNA directed polymerase
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
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Ell3
elongation factor for RNA polymerase II 3
involved_in
ISO
(PMID:10882741)
RGD
PMID:10882741
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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Ak6
adenylate kinase 6
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:31,794,316...31,806,375
Ensembl chr 2:31,794,519...31,806,371 Ensembl chr20:31,794,519...31,806,371
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Brf1
BRF1, RNA polymerase III transcription initiation factor subunit
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278
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Brf2
BRF2, RNA polymerase III transcription initiation factor subunit
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
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Myc
MYC proto-oncogene, bHLH transcription factor
IDA
RGD
PMID:3306601
RGD:69897
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Ncoa6
nuclear receptor coactivator 6
involved_in
ISO IEA
(PMID:10567404) GO_REF:0000107
RGD Ensembl
PMID:10567404
GO_REF:0000107
NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268
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Polr1f
RNA polymerase I subunit F
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 6:50,053,289...50,070,514
Ensembl chr 6:50,053,289...50,070,514
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Polr2g
RNA polymerase II subunit G
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
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Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within
ISO
(MGI:63283|PMID:8413268)
RGD
PMID:8413268
MGI:63283
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
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Rsf1
remodeling and spacing factor 1
involved_in
ISO
(PMID:9836642)
RGD
PMID:9836642
NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
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Smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
ISO
(PMID:9836642)
RGD
PMID:9836642
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:9212049), (PMID:9603525)
RGD
PMID:9212049 PMID:9603525
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
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Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
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Taf9
TATA-box binding protein associated factor 9
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
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Taf9b
TATA-box binding protein associated factor 9b
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr X:71,289,290...71,300,142
Ensembl chr X:71,289,290...71,300,604
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Tbp
TATA box binding protein
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
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Tbpl1
TATA-box binding protein like 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122 Ensembl chr 1:22,778,459...22,803,122
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Tbpl2
TATA box binding protein-like 2
involved_in
IBA IEA
PMID:21873635 GO_REF:0000002
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr 3:6,772,419...6,793,213
Ensembl chr 3:6,772,419...6,793,231
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Taf8
TATA-box binding protein associated factor 8
acts_upstream_of_or_within
ISO
(PMID:14580349)
RGD
PMID:14580349
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Dhx9
DExH-box helicase 9
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
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ENSRNOG00000063939
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
Ensembl chr15:43,363,981...43,364,769
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Mterf1
mitochondrial transcription termination factor 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:20550934)
UniProt RGD
PMID:20550934
GO_REF:0000024
NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
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Polr2a
RNA polymerase II subunit A
involved_in
ISO
(PMID:26700805)
RGD
PMID:26700805
NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
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Prmt5
protein arginine methyltransferase 5
involved_in
ISO
(PMID:26700805)
RGD
PMID:26700805
NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
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Setx
senataxin
involved_in
ISO
(PMID:26700805)
RGD
PMID:26700805
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Smn1
survival of motor neuron 1, telomeric
involved_in
ISS ISO
GO_REF:0000024 (PMID:26700805)
UniProt RGD
PMID:26700805
GO_REF:0000024
NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
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Wdr82
WD repeat domain 82
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
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Polr2i
RNA polymerase II subunit I
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
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Ddx56
DEAD-box helicase 56
acts_upstream_of_negative_effect
ISO
(PMID:33109765)
RGD
PMID:33109765
NCBI chr14:81,112,008...81,122,395
Ensembl chr14:81,112,012...81,122,333
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Fbxl2
F-box and leucine-rich repeat protein 2
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 8:113,916,660...113,965,137
Ensembl chr 8:113,913,373...113,965,066
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Fmr1
fragile X messenger ribonucleoprotein 1
involved_in
ISO
(PMID:24514761)
RGD
PMID:24514761
NCBI chr X:147,240,239...147,278,057
Ensembl chr X:147,240,301...147,278,050
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Phb1
prohibitin 1
involved_in
ISO
(MGI:6436975|PMID:29324904)
RGD
PMID:29324904
MGI:6436975
NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042
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Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
involved_in
ISO
(PMID:25106914)
RGD
PMID:25106914
NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
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Tmem41b
transmembrane protein 41B
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933
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Vapb
VAMP associated protein B and C
involved_in
ISO
(PMID:19515777)
RGD
PMID:19515777
NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763
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Morc1
MORC family CW-type zinc finger 1
acts_upstream_of_or_within
ISO
MGI:1857787 (MGI:5694015|PMID:25503965)
RGD
PMID:25503965
MGI:5694015
NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
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Thra
thyroid hormone receptor alpha
involved_in
ISO
(PMID:8524305)
RGD
PMID:8524305
NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:9450929), (PMID:9857195)
RGD
PMID:9450929 PMID:9857195
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
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Supt5h
SPT5 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:10075709), (PMID:9450929)
RGD
PMID:9450929 PMID:10075709
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
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Wdr82
WD repeat domain 82
involved_in
ISO
(PMID:33913806) (MGI:6867107|PMID:33767452)
RGD
PMID:33767452 PMID:33913806
MGI:6867107
NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
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Zc3h4
zinc finger CCCH-type containing 4
involved_in
ISO
(PMID:33913806) (MGI:6867107|PMID:33767452)
RGD
PMID:33767452 PMID:33913806
MGI:6867107
NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691
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Wdr82
WD repeat domain 82
involved_in
ISO
(PMID:33913806) (MGI:6867107|PMID:33767452)
RGD
PMID:33767452 PMID:33913806
MGI:6867107
NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
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Zc3h4
zinc finger CCCH-type containing 4
involved_in
ISO
(PMID:33913806) (MGI:6867107|PMID:33767452)
RGD
PMID:33767452 PMID:33913806
MGI:6867107
NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691
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Rgn
regucalcin
IMP
RGD
PMID:12397604
RGD:1566573
NCBI chr X:1,619,030...1,634,456
Ensembl chr X:1,619,032...1,634,450
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Hmgb1
high mobility group box 1
involved_in
ISO
(PMID:8006019)
RGD
PMID:8006019
NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
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Thra
thyroid hormone receptor alpha
involved_in
ISO IEA
(PMID:8524305) GO_REF:0000107
RGD Ensembl
PMID:8524305
GO_REF:0000107
NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
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Aicda
activation-induced cytidine deaminase
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
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Apobec3
apolipoprotein B mRNA editing enzyme catalytic subunit 3
involved_in
IBA ISO
PMID:21873635 (PMID:18779051), (PMID:21835787)
RGD
PMID:18779051 PMID:21835787 PMID:21873635
RGD:13792537
NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922
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Hmga2
high mobility group AT-hook 2
involved_in
ISO ISS
(PMID:17005673) GO_REF:0000024
RGD UniProt
PMID:17005673
GO_REF:0000024
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Inpp5k
inositol polyphosphate-5-phosphatase K
involved_in
ISO
(PMID:18774950)
RGD
PMID:18774950
NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773
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Morc2
MORC family CW-type zinc finger 2
involved_in
ISO
(PMID:29211708) (MGI:6271895|PMID:29728365)
RGD
PMID:29211708 PMID:29728365
MGI:6271895
NCBI chr14:78,529,603...78,571,375
Ensembl chr14:78,527,009...78,571,343
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Mphosph8
M-phase phosphoprotein 8
involved_in
ISO ISS
(PMID:29211708) GO_REF:0000024
RGD UniProt
PMID:29211708
GO_REF:0000024
NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810
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Resf1
retroelement silencing factor 1
involved_in
ISO
(MGI:6271895|PMID:29728365)
RGD
PMID:29728365
MGI:6271895
NCBI chr 4:182,325,913...182,362,054
Ensembl chr 4:182,335,454...182,362,054
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Setdb1
SET domain bifurcated histone lysine methyltransferase 1
involved_in
ISO
(MGI:5440670|PMID:20164836), (MGI:6271895|PMID:29728365)
RGD
PMID:20164836 PMID:29728365
MGI:5440670 MGI:6271895
NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
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Tasor
transcription activation suppressor
involved_in
ISO
(PMID:29211708)
RGD
PMID:29211708
NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
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Trim28
tripartite motif-containing 28
involved_in acts_upstream_of_or_within
ISO
(MGI:5440670|PMID:20164836) MGI:2143362 (MGI:3842857|PMID:19270682)
RGD
PMID:19270682 PMID:20164836
MGI:3842857 MGI:5440670
NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
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Per2
period circadian regulator 2
involved_in
ISO
(MGI:5430667|PMID:22767893)
RGD
PMID:22767893
MGI:5430667
NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
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Scaf4
SR-related CTD-associated factor 4
involved_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000107 PMID:21873635 (PMID:31104839)
UniProt Ensembl RGD
PMID:31104839 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153
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Scaf8
SR-related CTD-associated factor 8
involved_in
ISO IEA ISS
(PMID:31104839) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:31104839
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
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Axin1
axin 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:1336856|PMID:10318824), (MGI:3840033|PMID:19204372) GO_REF:0000107
RGD Ensembl
PMID:10318824 PMID:19204372
GO_REF:0000107 MGI:1336856 MGI:3840033
NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
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Eapp
E2F-associated phosphoprotein
acts_upstream_of_or_within
ISO
(PMID:15716352)
RGD
PMID:15716352
NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
acts_upstream_of_or_within
ISO
MGI:2661097 (MGI:3846264|PMID:19303854)
RGD
PMID:19303854
MGI:3846264
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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Hnrnpu
heterogeneous nuclear ribonucleoprotein U
involved_in
IEA ISO
GO_REF:0000107 (PMID:10490622)
Ensembl RGD
PMID:10490622
GO_REF:0000107
NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
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Nelfa
negative elongation factor complex member A
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:5014448|PMID:21670248) PMID:21873635 (PMID:12612062)
RGD
PMID:12612062 PMID:21670248 PMID:21873635
MGI:5014448 , RGD:13792537
NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994
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Nelfb
negative elongation factor complex member B
involved_in
ISO IBA
(MGI:3845453|PMID:19340312), (MGI:5576446|PMID:24656816), (MGI:6270977|PMID:25773599) PMID:21873635 (PMID:12612062)
RGD
PMID:12612062 PMID:19340312 PMID:24656816 PMID:25773599 PMID:21873635
MGI:3845453 MGI:5576446 MGI:6270977 , RGD:13792537
NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403
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Nelfcd
negative elongation factor complex member C/D
involved_in
ISO IBA
(PMID:12612062) PMID:21873635
RGD
PMID:12612062 PMID:21873635
RGD:13792537
NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884
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Nelfe
negative elongation factor complex member E
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:5014448|PMID:21670248) (PMID:12612062), (PMID:14701750), (PMID:27256882) PMID:21873635 (MGI:6357632|PMID:31399344)
RGD
PMID:12612062 PMID:14701750 PMID:21670248 PMID:27256882 PMID:31399344 PMID:21873635 More...
MGI:5014448 MGI:6357632 , RGD:13792537
NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355
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Parp1
poly (ADP-ribose) polymerase 1
involved_in
ISO
(PMID:35393539)
RGD
PMID:35393539
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Recql5
RecQ like helicase 5
involved_in
ISO ISS
(PMID:23748380) GO_REF:0000024
RGD UniProt
PMID:23748380
GO_REF:0000024
NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
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Rnf168
ring finger protein 168
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20550933)
UniProt Ensembl RGD
PMID:20550933
GO_REF:0000024 GO_REF:0000107
NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
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Rnf8
ring finger protein 8
involved_in
ISO ISS
(PMID:20550933) GO_REF:0000024
RGD UniProt
PMID:20550933
GO_REF:0000024
NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
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Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:3703195|PMID:17284610)
Ensembl RGD
PMID:17284610
GO_REF:0000107 MGI:3703195
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Sirt6
sirtuin 6
involved_in
ISO
(MGI:6214653|PMID:25247314), (MGI:6357632|PMID:31399344)
RGD
PMID:25247314 PMID:31399344
MGI:6214653 MGI:6357632
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
acts_upstream_of_or_within
ISO
(MGI:5014448|PMID:21670248)
RGD
PMID:21670248
MGI:5014448
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
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Vhl
von Hippel-Lindau tumor suppressor
involved_in
ISO
(PMID:7660122)
RGD
PMID:7660122
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
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Ctnnbip1
catenin, beta-interacting protein 1
involved_in
ISO
(MGI:4821083|PMID:11751639)
RGD
PMID:11751639
MGI:4821083
NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
involved_in
ISO
(PMID:10692439)
RGD
PMID:10692439
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Pcid2
PCI domain containing 2
involved_in
ISO
(MGI:6106288|PMID:29138493)
RGD
PMID:29138493
MGI:6106288
NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
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Zfp451
zinc finger protein 451
involved_in
ISO IBA
(PMID:24324267) PMID:21873635
RGD
PMID:24324267 PMID:21873635
RGD:13792537
NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652
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Zfp473
zinc finger protein 473
IMP
RGD
PMID:12748187
RGD:1299608
NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325
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Atg16l1
autophagy related 16-like 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5552992|PMID:24550300)
RGD
PMID:24550300 PMID:21873635
MGI:5552992 , RGD:13792537
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
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Atg16l2
autophagy related 16-like 2
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5552992|PMID:24550300)
RGD
PMID:24550300 PMID:21873635
MGI:5552992 , RGD:13792537
NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
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Atg5
autophagy related 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:5552992|PMID:24550300)
Ensembl RGD
PMID:24550300
GO_REF:0000107 MGI:5552992
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
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Atg7
autophagy related 7
acts_upstream_of_or_within
ISO
(MGI:5552992|PMID:24550300)
RGD
PMID:24550300
MGI:5552992
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
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Btbd18
BTB domain containing 18
involved_in
ISO
(MGI:5882241|PMID:28292424)
RGD
PMID:28292424
MGI:5882241
NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042
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Gins1
GINS complex subunit 1
involved_in
ISO
(PMID:17170760)
RGD
PMID:17170760
NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
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Gins2
GINS complex subunit 2
involved_in
ISO
(PMID:17170760)
RGD
PMID:17170760
NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
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Gins3
GINS complex subunit 3
involved_in
ISO
(PMID:17170760)
RGD
PMID:17170760
NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687
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Gins4
GINS complex subunit 4
involved_in
ISO IEA
(PMID:17170760) GO_REF:0000107
RGD Ensembl
PMID:17170760
GO_REF:0000107
NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
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Prim2
DNA primase subunit 2
involved_in
ISO ISS
(PMID:25550159) GO_REF:0000024
RGD UniProt
PMID:25550159
GO_REF:0000024
NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
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Bclaf1
BCL2-associated transcription factor 1
involved_in
ISO
(PMID:17938203)
RGD
PMID:17938203
NCBI chr 1:15,088,436...15,117,666
Ensembl chr 1:15,070,894...15,148,832
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Cebpa
CCAAT/enhancer binding protein alpha
involved_in
ISO
(PMID:28186500)
RGD
PMID:28186500
NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
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Fosl1
FOS like 1, AP-1 transcription factor subunit
involved_in
ISO
(PMID:23027619)
RGD
PMID:23027619
NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930
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Jun
Jun proto-oncogene, AP-1 transcription factor subunit
involved_in
ISO
(PMID:23027619)
RGD
PMID:23027619
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
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Mitf
melanocyte inducing transcription factor
involved_in
ISO IEA
(PMID:12204775), (PMID:8995290) GO_REF:0000107
RGD Ensembl
PMID:8995290 PMID:12204775
GO_REF:0000107
NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
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Setx
senataxin
involved_in
ISO
(PMID:21700224)
RGD
PMID:21700224
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:17332325)
RGD
PMID:17332325
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Alyref
Aly/REF export factor
involved_in
ISO
(PMID:22144908)
RGD
PMID:22144908
NCBI chr10:105,871,306...105,875,076
Ensembl chr10:105,871,306...105,875,069
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Ccnk
cyclin K
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
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Ccnt1
cyclin T1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
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Ccnt2
cyclin T2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
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Da2-19
uncharacterized LOC302729
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr X:44,820,693...44,837,935
Ensembl chr X:44,820,820...44,837,934
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Ddx39b
DExD-box helicase 39B
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:22144908)
UniProt Ensembl RGD
PMID:22144908
GO_REF:0000024 GO_REF:0000107
NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
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Ell3
elongation factor for RNA polymerase II 3
involved_in
ISO IEA
(PMID:10882741) GO_REF:0000107
RGD Ensembl
PMID:10882741
GO_REF:0000107
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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ENSRNOG00000068353
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 1:258,030,937...258,037,823
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ENSRNOG00000069559
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 4:64,095,041...64,095,714
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
involved_in
ISO
(PMID:9326587)
RGD
PMID:9326587
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Kat7
lysine acetyltransferase 7
involved_in
ISS ISO
GO_REF:0000024 (MGI:6392952|PMID:31827282)
UniProt RGD
PMID:31827282
GO_REF:0000024 MGI:6392952
NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
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Parp1
poly (ADP-ribose) polymerase 1
involved_in
ISO
(PMID:27256882)
RGD
PMID:27256882
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Scaf8
SR-related CTD-associated factor 8
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:31104839)
UniProt Ensembl RGD
PMID:31104839
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:9450929)
RGD
PMID:9450929
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
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Supt5h
SPT5 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:9450929)
RGD
PMID:9450929
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
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Thoc1
THO complex subunit 1
involved_in
ISO
(PMID:22144908)
RGD
PMID:22144908
NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
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Thoc5
THO complex subunit 5
involved_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000107 PMID:21873635 (PMID:22144908)
UniProt Ensembl RGD
PMID:22144908 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718
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Mybl1
MYB proto-oncogene like 1
involved_in
ISO
(MGI:5495879|PMID:23523368)
RGD
PMID:23523368
MGI:5495879
NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183
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Il1b
interleukin 1 beta
involved_in
ISO
(PMID:29384235)
RGD
PMID:29384235
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
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Nmd3
NMD3 ribosome export adaptor
involved_in
ISO
(PMID:23782956)
RGD
PMID:23782956
NCBI chr 2:154,012,973...154,038,466
Ensembl chr 2:154,013,020...154,039,259
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Ahr
aryl hydrocarbon receptor
acts_upstream_of_or_within
ISO
(MGI:62922|PMID:8215422)
RGD
PMID:8215422
MGI:62922
NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
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Cand1
cullin-associated and neddylation-dissociated 1
involved_in
IDA
PMID:10567521
UniProt
PMID:10567521
RGD:8553447
NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993
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Creb1
cAMP responsive element binding protein 1
IMP
RGD
PMID:16891311
RGD:1625706
NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
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Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
MGI:2158690 (MGI:5317044|PMID:21245044)
RGD
PMID:21245044
MGI:5317044
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
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Psmc6
proteasome 26S subunit, ATPase 6
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055
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Tp53
tumor protein p53
involved_in
ISO IEA
(PMID:24289924) GO_REF:0000107
RGD Ensembl
PMID:24289924
GO_REF:0000107
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Wnt10b
Wnt family member 10B
acts_upstream_of_or_within
ISO
(MGI:3820325|PMID:19056892)
RGD
PMID:19056892
MGI:3820325
NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
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Top2a
DNA topoisomerase II alpha
involved_in
IEA ISO
GO_REF:0000107 (PMID:16712776)
Ensembl RGD
PMID:16712776
GO_REF:0000107
NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
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Top2b
DNA topoisomerase II beta
involved_in
ISO
(PMID:16712776)
RGD
PMID:16712776
NCBI chr15:9,051,661...9,111,220
Ensembl chr15:9,051,341...9,112,085
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Setx
senataxin
involved_in
ISO
(PMID:19515850)
RGD
PMID:19515850
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Wnk1
WNK lysine deficient protein kinase 1
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:29196535) GO_REF:0000024
Ensembl RGD UniProt
PMID:29196535
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:153,128,334...153,253,905
Ensembl chr 4:153,128,334...153,253,905
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Setx
senataxin
involved_in
ISO
(PMID:21700224)
RGD
PMID:21700224
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Brd4
bromodomain containing 4
acts_upstream_of_or_within involved_in
ISO
(PMID:18039861) (PMID:19103749)
RGD
PMID:18039861 PMID:19103749
NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
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Btbd18
BTB domain containing 18
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042
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Cbx7
chromobox 7
IMP
RGD
PMID:19706751
RGD:9586729
NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973
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Ccnk
cyclin K
involved_in
ISO
(PMID:26748711)
RGD
PMID:26748711
NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
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Ccnt1
cyclin T1
involved_in
ISO
(PMID:29849146), (PMID:30134174), (PMID:35393539), (PMID:9499409)
RGD
PMID:9499409 PMID:29849146 PMID:30134174 PMID:35393539
NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
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Ccnt2
cyclin T2
involved_in
ISO
(PMID:9499409)
RGD
PMID:9499409
NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
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Cdc73
cell division cycle 73
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Cdk12
cyclin-dependent kinase 12
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:83,201,177...83,256,906 NCBI chr10:83,267,332...83,280,881
Ensembl chr10:83,201,211...83,280,888
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Cdk13
cyclin-dependent kinase 13
involved_in
ISO IBA
(PMID:26748711) PMID:21873635
RGD
PMID:26748711 PMID:21873635
RGD:13792537
NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
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Cdk9
cyclin-dependent kinase 9
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:14701750), (PMID:29849146), (PMID:30134174), (PMID:9499409)
UniProt Ensembl RGD
PMID:9499409 PMID:14701750 PMID:29849146 PMID:30134174
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
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Ctnnb1
catenin beta 1
involved_in
ISO IEA
MGI:2148567|MGI:3841145 (MGI:6284231|PMID:30478225) GO_REF:0000107
RGD Ensembl
PMID:30478225
GO_REF:0000107 MGI:6284231
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Dab2
DAB adaptor protein 2
involved_in
ISO
(MGI:5442512|PMID:15894542)
RGD
PMID:15894542
MGI:5442512
NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
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Eapp
E2F-associated phosphoprotein
acts_upstream_of_or_within
ISO
(PMID:15716352)
RGD
PMID:15716352
NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734
G
Ell
elongation factor for RNA polymerase II
involved_in
ISO IBA
(PMID:23932780) PMID:21873635
RGD
PMID:23932780 PMID:21873635
RGD:13792537
NCBI chr16:18,845,025...18,891,484
Ensembl chr16:18,843,780...18,891,118
G
Ell2
elongation factor for RNA polymerase II 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781
G
Ell3
elongation factor for RNA polymerase II 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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Eloc
elongin C
IDA
RGD
PMID:8202474
RGD:730008
NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
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Gtf2f1
general transcription factor IIF subunit 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
G
Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
MGI:2158690 (MGI:5317044|PMID:21245044)
RGD
PMID:21245044
MGI:5317044
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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LOC689396
similar to RNA polymerase II elongation factor ELL2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:145,878,600...145,888,249
Ensembl chr X:145,878,614...145,887,896
G
Map2k1
mitogen activated protein kinase kinase 1
IMP
RGD
PMID:18086894
RGD:2292639
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
G
Pwwp2a
PWWP domain containing 2A
involved_in
ISO
(MGI:6709552|PMID:30228260)
RGD
PMID:30228260
MGI:6709552
NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308
G
Pwwp2b
PWWP domain containing 2B
involved_in
ISO
(MGI:6709552|PMID:30228260)
RGD
PMID:30228260
MGI:6709552
NCBI chr 1:194,040,395...194,059,979
Ensembl chr 1:194,041,341...194,059,958
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Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
ISO
(PMID:17234882) (MGI:5508611|PMID:17234882)
RGD
PMID:17234882
MGI:5508611
NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
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Zmynd8
zinc finger, MYND-type containing 8
involved_in
ISO
UniProtKB:P50750 (PMID:26655721), (PMID:30134174)
RGD
PMID:26655721 PMID:30134174
NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463
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Dhx36
DEAH-box helicase 36
involved_in
ISS ISO
GO_REF:0000024 (PMID:21993297)
UniProt RGD
PMID:21993297
GO_REF:0000024
NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
acts_upstream_of_or_within
ISO
(MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
acts_upstream_of_or_within
ISO
MGI:1932102|MGI:99135 (MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Gtf2a1
general transcription factor 2A subunit 1
involved_in
ISO
(PMID:11030333)
RGD
PMID:11030333
NCBI chr 6:110,488,891...110,521,059
Ensembl chr 6:110,488,931...110,521,511
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Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO
(PMID:11030333)
RGD
PMID:11030333
NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
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Hnf1a
HNF1 homeobox A
involved_in
ISO
UniProtKB:P35680 (PMID:15355349)
RGD
PMID:15355349
NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
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Hnf1b
HNF1 homeobox B
involved_in
ISO IEA
(PMID:15355349) GO_REF:0000107
RGD Ensembl
PMID:15355349
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Irf8
interferon regulatory factor 8
acts_upstream_of_or_within NOT|acts_upstream_of_or_within
ISO
(MGI:5448615|PMID:22942423)
RGD
PMID:22942423
MGI:5448615
NCBI chr19:48,790,483...48,812,363
Ensembl chr19:48,790,588...48,811,829
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LOC103693281
activated RNA polymerase II transcriptional coactivator p15 pseudogene
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr15:12,858,465...12,858,878
Ensembl chr15:12,858,465...12,858,845
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Med1
mediator complex subunit 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:12218053), (PMID:16314496)
UniProt RGD
PMID:12218053 PMID:16314496
GO_REF:0000024
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
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Med12
mediator complex subunit 12
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr X:66,404,622...66,427,772
Ensembl chr X:66,404,760...66,428,387
G
Med13
mediator complex subunit 13
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr10:71,086,978...71,176,535
Ensembl chr10:71,090,516...71,177,242
G
Med14
mediator complex subunit 14
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr X:10,036,749...10,127,910
Ensembl chr X:10,036,805...10,126,240
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Med16
mediator complex subunit 16
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 7:9,798,641...9,811,172
Ensembl chr 7:9,798,668...9,811,172
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Med17
mediator complex subunit 17
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 8:12,101,594...12,120,592
Ensembl chr 8:12,101,594...12,120,592
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Med24
mediator complex subunit 24
involved_in
ISO IEA
(PMID:12218053) GO_REF:0000107
RGD Ensembl
PMID:12218053
GO_REF:0000107
NCBI chr10:83,664,609...83,702,315
Ensembl chr10:83,664,609...83,690,123
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Med30
mediator complex subunit 30
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 7:84,004,710...84,028,064
Ensembl chr 7:84,004,722...84,026,595
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Med4
mediator complex subunit 4
involved_in
ISO IEA
(PMID:12218053) GO_REF:0000107
RGD Ensembl
PMID:12218053
GO_REF:0000107
NCBI chr15:48,696,542...48,706,818
Ensembl chr15:48,696,511...48,706,820
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Myc
MYC proto-oncogene, bHLH transcription factor
involved_in
ISO
(MGI:6377809|PMID:26691508)
RGD
PMID:26691508
MGI:6377809
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Nfkb1
nuclear factor kappa B subunit 1
involved_in
ISO IEA
(MGI:3768909|PMID:16322095) GO_REF:0000107
RGD Ensembl
PMID:16322095
GO_REF:0000107 MGI:3768909
NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
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Nfkbia
NFKB inhibitor alpha
involved_in
ISO
(MGI:3768909|PMID:16322095)
RGD
PMID:16322095
MGI:3768909
NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
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Nkx2-5
NK2 homeobox 5
involved_in
IEA ISO
GO_REF:0000107 (MGI:83559|PMID:8887666)
Ensembl RGD
PMID:8887666
GO_REF:0000107 MGI:83559
NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
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Paxip1
PAX interacting protein 1
involved_in
ISO IBA
(PMID:17925232) PMID:21873635 (MGI:4354659|PMID:19583951), (MGI:4821506|PMID:20671152)
RGD
PMID:17925232 PMID:19583951 PMID:20671152 PMID:21873635
MGI:4354659 MGI:4821506 , RGD:13792537
NCBI chr 4:7,524,887...7,576,663
Ensembl chr 4:7,525,004...7,576,548
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Pou5f1
POU class 5 homeobox 1
involved_in
ISO
(MGI:6377809|PMID:26691508)
RGD
PMID:26691508
MGI:6377809
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Srf
serum response factor
involved_in
ISO
(PMID:8887666)
RGD
PMID:8887666
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
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Sub1
SUB1 regulator of transcription
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436 Ensembl chr 2:61,005,666...61,020,436
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Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
G
Taf11
TATA-box binding protein associated factor 11
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
G
Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
G
Taf13
TATA-box binding protein associated factor 13
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
G
Taf2
TATA-box binding protein associated factor 2
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
G
Taf3
TATA-box binding protein associated factor 3
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf4b
TATA-box binding protein associated factor 4b
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO IEA
(PMID:11583621), (PMID:18628956) GO_REF:0000107 (PMID:17884155)
RGD Ensembl
PMID:11583621 PMID:17884155 PMID:18628956
GO_REF:0000107
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
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Taf8
TATA-box binding protein associated factor 8
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Taf9
TATA-box binding protein associated factor 9
involved_in
ISO IEA
(PMID:17884155) GO_REF:0000107
RGD Ensembl
PMID:17884155
GO_REF:0000107
NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
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Tbp
TATA box binding protein
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
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Xpa
XPA, DNA damage recognition and repair factor
acts_upstream_of_or_within
ISO
MGI:1100494 (MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
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Znhit1
zinc finger, HIT-type containing 1
involved_in
ISO
(MGI:6106288|PMID:29138493)
RGD
PMID:29138493
MGI:6106288
NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
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Ccar2
cell cycle and apoptosis regulator 2
involved_in
ISO
(PMID:22446626)
RGD
PMID:22446626
NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
involved_in
ISO
(PMID:9326587)
RGD
PMID:9326587
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Setd5
SET domain containing 5
involved_in
ISO
(MGI:6381850|PMID:31515109)
RGD
PMID:31515109
MGI:6381850
NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894
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Thoc1
THO complex subunit 1
involved_in
ISO
(PMID:15870275)
RGD
PMID:15870275
NCBI chr18:983,606...1,020,379
Ensembl chr18:983,824...1,019,114
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Zfp326
zinc finger protein 326
involved_in
ISO IBA
(PMID:22446626) PMID:21873635
RGD
PMID:22446626 PMID:21873635
RGD:13792537
NCBI chr14:3,941,210...3,980,419
Ensembl chr14:3,941,958...3,980,384
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Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within
ISO
(MGI:63283|PMID:8413268)
RGD
PMID:8413268
MGI:63283
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
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Med1
mediator complex subunit 1
involved_in
ISO
(PMID:17223341)
RGD
PMID:17223341
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
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Mitf
melanocyte inducing transcription factor
involved_in
ISO
(PMID:16411896)
RGD
PMID:16411896
NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
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Tnfrsf1b
TNF receptor superfamily member 1B
involved_in
ISO
(MGI:5775216|PMID:27147664)
RGD
PMID:27147664
MGI:5775216
NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206
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Wnt3a
Wnt family member 3A
acts_upstream_of_or_within
ISO
(MGI:5432828|PMID:22665494)
RGD
PMID:22665494
MGI:5432828
NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
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Atf7ip
activating transcription factor 7 interacting protein
involved_in
ISO
(PMID:12665582)
RGD
PMID:12665582
NCBI chr 4:169,385,872...169,471,652
Ensembl chr 4:169,385,872...169,471,650
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Zmpste24
zinc metallopeptidase STE24
acts_upstream_of_or_within
ISO
MGI:2180033 (MGI:5607719|PMID:20961378)
RGD
PMID:20961378
MGI:5607719
NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
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Eaf1
ELL associated factor 1
involved_in
ISO
(PMID:32087315)
RGD
PMID:32087315
NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071
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Eaf2
ELL associated factor 2
involved_in
ISO
(PMID:32087315)
RGD
PMID:32087315
NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
IMP
RGD
PMID:31644904
RGD:126925983
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Ldb1
LIM domain binding 1
involved_in
ISO
(MGI:4834059|PMID:20570862)
RGD
PMID:20570862
MGI:4834059
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
involved_in
ISO IBA
(PMID:9450929) PMID:21873635
RGD
PMID:9450929 PMID:21873635
RGD:13792537
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
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Supt5h
SPT5 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:9450929)
RGD
PMID:9450929
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
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Wdr43
WD repeat domain 43
involved_in
ISO
(MGI:6323527|PMID:31128943)
RGD
PMID:31128943
MGI:6323527
NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846
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Zmynd11
zinc finger, MYND-type containing 11
involved_in
ISO IBA
(MGI:5560379|PMID:24590075) PMID:21873635
RGD
PMID:24590075 PMID:21873635
MGI:5560379 , RGD:13792537
NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902
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Pwwp2a
PWWP domain containing 2A
involved_in
ISO
(MGI:6867108|PMID:33235983)
RGD
PMID:33235983
MGI:6867108
NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308
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Baz2a
bromodomain adjacent to zinc finger domain, 2A
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
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Polr1e
RNA polymerase I subunit E
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:1928312|PMID:8641287)
RGD
PMID:8641287 PMID:21873635
MGI:1928312 , RGD:13792537
NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
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Rrn3
RRN3 homolog, RNA polymerase I transcription factor
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
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Taf1b
TATA-box binding protein associated factor, RNA polymerase I subunit B
involved_in
ISO IEA ISS
(PMID:21921199) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:21921199
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593
G
Taf1c
TATA-box binding protein associated factor, RNA polymerase 1 subunit C
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971
G
Ubtf
upstream binding transcription factor
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
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Dr1
down-regulator of transcription 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638
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Esr1
estrogen receptor 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:9841876)
Ensembl RGD
PMID:9841876
GO_REF:0000107
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
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Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO IBA
(PMID:7958899), (PMID:8626665) PMID:21873635
RGD
PMID:7958899 PMID:8626665 PMID:21873635
RGD:13792537
NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
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Gtf2b
general transcription factor IIB
involved_in
IEA IBA ISS ISO
GO_REF:0000107 PMID:21873635 GO_REF:0000024 (PMID:3029109), (PMID:8413225), (PMID:9841876)
Ensembl UniProt RGD
PMID:3029109 PMID:8413225 PMID:9841876 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
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Gtf2f2
general transcription factor IIF subunit 2
IDA
RGD
PMID:7929273
RGD:9681417
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
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RGD1562272
similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563
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Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:27007846) MGI:3606185 (MGI:5918349|PMID:28893950)
RGD
PMID:27007846 PMID:28893950
MGI:5918349
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
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Taf11
TATA-box binding protein associated factor 11
involved_in
ISO IEA IBA
(PMID:27007846) GO_REF:0000002 PMID:21873635
RGD InterPro
PMID:27007846 PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
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Taf12
TATA-box binding protein associated factor 12
involved_in
ISO IBA
(PMID:27007846) PMID:21873635
RGD
PMID:27007846 PMID:21873635
RGD:13792537
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
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Taf13
TATA-box binding protein associated factor 13
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
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Taf2
TATA-box binding protein associated factor 2
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
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Taf3
TATA-box binding protein associated factor 3
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO IEA IBA
(PMID:27007846) GO_REF:0000107 PMID:21873635
RGD Ensembl
PMID:27007846 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf6l
TATA-box binding protein associated factor 6 like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO IBA
(PMID:27007846) PMID:21873635
RGD
PMID:27007846 PMID:21873635
RGD:13792537
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
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Taf7l
TATA-box binding protein associated factor 7-like
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:97,660,222...97,675,241
Ensembl chr X:97,660,222...97,675,023
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Taf7l-ps1
TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401
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Taf8
TATA-box binding protein associated factor 8
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Taf9
TATA-box binding protein associated factor 9
involved_in
ISO IBA IEA
(PMID:27007846) PMID:21873635 GO_REF:0000107
RGD Ensembl
PMID:27007846 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
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Tbp
TATA box binding protein
involved_in
ISO
(PMID:27007846), (PMID:9841876)
RGD
PMID:9841876 PMID:27007846
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
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Rprd1a
regulation of nuclear pre-mRNA domain containing 1A
involved_in
ISO
(PMID:22231121)
RGD
PMID:22231121
NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338
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Rprd1b
regulation of nuclear pre-mRNA domain containing 1B
involved_in
ISO
(PMID:22231121)
RGD
PMID:22231121
NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452
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Sub1
SUB1 regulator of transcription
involved_in
ISO
(PMID:25308091)
RGD
PMID:25308091
NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436 Ensembl chr 2:61,005,666...61,020,436
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Bdp1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:31,457,523...31,470,119
Ensembl chr 2:31,378,924...31,470,119
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Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
acts_upstream_of_or_within
ISO
(PMID:14963118)
RGD
PMID:14963118
NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
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Mterf1
mitochondrial transcription termination factor 1
involved_in
ISS ISO IBA
GO_REF:0000024 (PMID:20550934) PMID:21873635
UniProt RGD
PMID:20550934 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
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Mterf2
mitochondrial transcription termination factor 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684
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Cavin1
caveolae associated protein 1
involved_in acts_upstream_of_or_within
ISS ISO IBA
PMID:9582279 (MGI:1266983|PMID:9582279) (PMID:9582279) PMID:21873635
RGD
PMID:9582279 PMID:9582279 PMID:21873635
MGI:1266983 , RGD:8554461 , RGD:13792537
NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120
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Lipe
lipase E, hormone sensitive type
involved_in
ISS
PMID:9582279
UniProt
PMID:9582279
RGD:8554461
NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
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Polr1h
RNA polymerase I subunit H
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854
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Ttf1
transcription termination factor 1
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:72087|PMID:7720715) PMID:21873635
RGD
PMID:7720715 PMID:21873635
MGI:72087 , RGD:13792537
NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
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Maz
MYC associated zinc finger protein
involved_in
ISO
(PMID:1502157)
RGD
PMID:1502157
NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408
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Pcf11
PCF11 cleavage and polyadenylation factor subunit
involved_in
IBA ISO
PMID:21873635 (PMID:29196535)
RGD
PMID:29196535 PMID:21873635
RGD:13792537
NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
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Scaf8
SR-related CTD-associated factor 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
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Setx
senataxin
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5430667|PMID:22767893)
RGD
PMID:22767893 PMID:21873635
MGI:5430667 , RGD:13792537
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
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Xrn2
5'-3' exoribonuclease 2
involved_in
ISO
(PMID:15565158)
RGD
PMID:15565158
NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
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Polr3k
RNA polymerase III subunit K
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:168,982,846...168,987,043
Ensembl chr 3:168,982,812...168,987,040
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Tefm
transcription elongation factor, mitochondrial
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
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Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
MGI:2183949 (MGI:5496981|PMID:23562818)
RGD
PMID:23562818
MGI:5496981
NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
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Ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit
acts_upstream_of_or_within
ISO
(MGI:5496981|PMID:23562818)
RGD
PMID:23562818
MGI:5496981
NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
acts_upstream_of_or_within
ISO
MGI:1932102 (MGI:5496981|PMID:23562818)
RGD
PMID:23562818
MGI:5496981
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Gtf2h5
general transcription factor IIH subunit 5
acts_upstream_of_or_within
ISO
MGI:5514340 (MGI:5496981|PMID:23562818)
RGD
PMID:23562818
MGI:5496981
NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
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Polr1e
RNA polymerase I subunit E
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
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Ubtf
upstream binding transcription factor
acts_upstream_of_or_within
ISO
(MGI:5496981|PMID:23562818)
RGD
PMID:23562818
MGI:5496981
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
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AABR07002622.1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 1:76,426,358...76,427,521
G
AABR07043557.1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr19:22,481,952...22,483,036
G
AC119015.2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
G
AC119015.3
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr10:73,743,526...73,743,822
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Adrm1
ADRM1 26S proteasome ubiquitin receptor
involved_in
ISO IEA
(PMID:11818576) GO_REF:0000107
RGD Ensembl
PMID:11818576
GO_REF:0000107
NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195
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Cdc73
cell division cycle 73
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20178742)
UniProt Ensembl RGD
PMID:20178742
GO_REF:0000024 GO_REF:0000107
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO IBA
(PMID:20178742) PMID:21873635
RGD
PMID:20178742 PMID:21873635
RGD:13792537
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Eaf1
ELL associated factor 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071
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Eaf2
ELL associated factor 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610
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Ell
elongation factor for RNA polymerase II
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr16:18,845,025...18,891,484
Ensembl chr16:18,843,780...18,891,118
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Ell2
elongation factor for RNA polymerase II 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781
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Ell3
elongation factor for RNA polymerase II 3
involved_in
ISO IEA
(PMID:10882741) GO_REF:0000107 GO_REF:0000002
RGD Ensembl InterPro
PMID:10882741
GO_REF:0000002 GO_REF:0000107
NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
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Eloa
elongin A
involved_in
IDA IEA
PMID:8896449 GO_REF:0000002
InterPro
PMID:8896449
GO_REF:0000002, RGD:8553414
NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
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Elob
elongin B
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
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Elob-ps13
elongin B, pseduogene 13
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
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Elob-ps4
elongin B, pseduogene 4
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:73,749,685...73,750,358
Ensembl chr10:73,747,952...73,750,403
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Elof1
elongation factor 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 8:20,645,336...20,650,888
Ensembl chr 8:20,645,336...20,650,579
G
ENSRNOG00000063973
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr X:115,936,708...115,937,864
G
ENSRNOG00000064158
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:21,002,979...21,003,786
G
ENSRNOG00000065620
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:21,006,946...21,007,741
G
ENSRNOG00000066103
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:21,025,824...21,026,620
G
ENSRNOG00000066836
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 8:3,228,866...3,234,903
G
ENSRNOG00000068416
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:21,017,907...21,018,712
G
ENSRNOG00000068577
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:20,998,987...20,999,319
G
ENSRNOG00000069411
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:21,029,748...21,030,080
G
ENSRNOG00000069831
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:20,991,066...20,991,398
G
ENSRNOG00000070656
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 6:76,070,756...76,077,309
G
ENSRNOG00000071067
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 4:126,816,739...126,817,049
G
Eny2
ENY2, transcription and export complex 2 subunit
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 7:75,581,215...75,605,903
Ensembl chr 7:75,581,240...75,605,897
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Gtf2f1
general transcription factor IIF subunit 1
involved_in
ISO
(PMID:15351637)
RGD
PMID:15351637
NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
G
Gtf2f2
general transcription factor IIF subunit 2
involved_in
IDA ISO
(PMID:15351637)
RGD
PMID:15351637 PMID:7929273
RGD:9681417
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
G
Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO ISS
(PMID:20178742) GO_REF:0000024
RGD UniProt
PMID:20178742
GO_REF:0000024
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
G
LOC120098580
DNA-directed RNA polymerase II subunit GRINL1A-like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr19:22,878,910...22,880,774
Ensembl chr19:22,879,469...22,880,556
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LOC689396
similar to RNA polymerase II elongation factor ELL2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr X:145,878,600...145,888,249
Ensembl chr X:145,878,614...145,887,896
G
Myzap
myocardial zonula adherens protein
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 8:72,155,817...72,243,036
Ensembl chr 8:72,131,530...72,243,036
G
Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO ISS
(PMID:20178742) GO_REF:0000024
RGD UniProt
PMID:20178742
GO_REF:0000024
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
G
Pbrm1
polybromo 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
G
Pcid2
PCI domain containing 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
G
Polr2m
RNA polymerase II subunit M
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036
G
RGD1564031
similar to transcription elongation factor B (SIII), polypeptide 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970
G
RGD1565653
similar to transcription elongation factor B (SIII), polypeptide 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 8:110,990,032...110,995,705
Ensembl chr 8:110,989,940...110,995,640
G
Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
involved_in
ISO
(PMID:20178742)
RGD
PMID:20178742
NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
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Setd2
SET domain containing 2, histone lysine methyltransferase
involved_in
ISO
(PMID:23325844)
RGD
PMID:23325844
NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
G
Skic8
SKI8 subunit of superkiller complex
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20178742)
UniProt Ensembl RGD
PMID:20178742
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813
G
Sox10
SRY-box transcription factor 10
IDA
RGD
PMID:25524031
RGD:12879827
NCBI chr 7:110,725,274...110,735,544
Ensembl chr 7:110,725,274...110,735,544
G
Supt16h
SPT16 homolog, facilitates chromatin remodeling subunit
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
G
Supt4h1
SPT4 homolog, DSIF elongation factor subunit
involved_in
ISO
(PMID:9450929), (PMID:9857195)
RGD
PMID:9450929 PMID:9857195
NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
G
Supt5h
SPT5 homolog, DSIF elongation factor subunit
involved_in
ISO IBA
(PMID:10075709), (PMID:9450929) PMID:21873635
RGD
PMID:9450929 PMID:10075709 PMID:21873635
RGD:13792537
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
G
Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
G
Tcea1
transcription elongation factor A1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 5:14,631,454...14,668,769
Ensembl chr 5:14,631,454...14,668,745
G
Tcea1l1
transcription elongation factor A1-like 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr15:10,401,012...10,403,460
Ensembl chr15:10,400,829...10,402,942
G
Tcea2
transcription elongation factor A2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:168,796,244...168,804,125
Ensembl chr 3:168,796,331...168,804,116
G
Tcea3
transcription elongation factor A3
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 5:148,476,941...148,509,452
Ensembl chr 5:148,476,941...148,509,448
G
Cdk9
cyclin-dependent kinase 9
involved_in
ISO IEA
(PMID:19844166) GO_REF:0000107
RGD Ensembl
PMID:19844166
GO_REF:0000107
NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
G
Iws1
interacts with SUPT6H, CTD assembly factor 1
involved_in
ISO IEA
(PMID:19141475) GO_REF:0000107
RGD Ensembl
PMID:19141475
GO_REF:0000107
NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172
G
Sart3
spliceosome associated factor 3, U4/U6 recycling protein
involved_in
ISO
(PMID:24526689)
RGD
PMID:24526689
NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
G
Supt5h
SPT5 homolog, DSIF elongation factor subunit
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
G
Supt6h
SPT6 homolog, histone chaperone and transcription elongation factor
involved_in
ISO
(PMID:23503590) (MGI:5484727|PMID:23503590)
RGD
PMID:23503590
MGI:5484727
NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
G
Usp15
ubiquitin specific peptidase 15
involved_in
ISO IEA ISS
(PMID:24526689) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:24526689
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:58,756,714...58,848,778
Ensembl chr 7:58,756,872...58,848,721
G
Polrmt
RNA polymerase mitochondrial
involved_in
ISO
(PMID:29149603)
RGD
PMID:29149603
NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
G
Tfam
transcription factor A, mitochondrial
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:20410300), (PMID:29149603)
UniProt RGD
PMID:20410300 PMID:29149603 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
G
Tfb1m
transcription factor B1, mitochondrial
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
G
Tfb2m
transcription factor B2, mitochondrial
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:20410300), (PMID:29149603)
UniProt RGD
PMID:20410300 PMID:29149603 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
G
Cavin1
caveolae associated protein 1
involved_in
ISS ISO IBA
PMID:9582279 (MGI:3711373|PMID:11139612) (PMID:9582279) PMID:21873635
RGD
PMID:9582279 PMID:11139612 PMID:9582279 PMID:21873635
MGI:3711373 , RGD:8554461 , RGD:13792537
NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120
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Lipe
lipase E, hormone sensitive type
involved_in
ISS
PMID:9582279
UniProt
PMID:9582279
RGD:8554461
NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
G
Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within involved_in
ISO IBA
MGI:3584037 (MGI:3583493|PMID:15989966) PMID:21873635
RGD
PMID:15989966 PMID:21873635
MGI:3583493 , RGD:13792537
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
G
Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
UniProtKB:P17480|UniProtKB:Q15572 (PMID:12498690)
RGD
PMID:12498690
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
G
Ttf1
transcription termination factor 1
acts_upstream_of_or_within
ISO
(MGI:72087|PMID:7720715)
RGD
PMID:7720715
MGI:72087
NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
G
Ubtf
upstream binding transcription factor
involved_in
ISO
(PMID:12498690)
RGD
PMID:12498690
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
G
AABR07015889.1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr14:78,776,373...78,776,700
G
Ccnh
cyclin H
involved_in
ISO IEA
(PMID:7533895) GO_REF:0000107
RGD Ensembl
PMID:7533895
GO_REF:0000107
NCBI chr 2:15,834,833...15,855,643
Ensembl chr 2:15,834,833...15,855,819
G
Cdk7
cyclin-dependent kinase 7
involved_in
IEA ISO
GO_REF:0000107 (PMID:7533895)
Ensembl RGD
PMID:7533895
GO_REF:0000107
NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
G
Eloa
elongin A
involved_in
ISO IEA
(PMID:7660122) GO_REF:0000107
RGD Ensembl
PMID:7660122
GO_REF:0000107
NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
G
Elob
elongin B
involved_in
ISO
(PMID:7660122)
RGD
PMID:7660122
NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
G
Eloc
elongin C
involved_in
ISO
(PMID:7660122)
RGD
PMID:7660122
NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
G
ENSRNOG00000064241
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 5:97,975,779...97,977,813
G
ENSRNOG00000067613
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr17:14,611,967...14,612,710
G
ENSRNOG00000067796
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr15:22,674,189...22,674,524
G
Ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit
involved_in
IBA IEA
PMID:21873635 GO_REF:0000002
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
G
Gtf2a1
general transcription factor 2A subunit 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:110,488,891...110,521,059
Ensembl chr 6:110,488,931...110,521,511
G
Gtf2a1l
general transcription factor 2A subunit 1 like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472
G
Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO IEA
(PMID:7958899) GO_REF:0000002
RGD InterPro
PMID:7958899
GO_REF:0000002
NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
G
Gtf2b
general transcription factor IIB
involved_in
ISO IBA ISS
(PMID:12931194), (PMID:3029109), (PMID:9420329) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:3029109 PMID:9420329 PMID:12931194 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
G
Gtf2e2
general transcription factor IIE subunit 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371
G
Gtf2f1
general transcription factor IIF subunit 1
involved_in
IBA IEA ISO
PMID:21873635 GO_REF:0000002 (PMID:15351637), (PMID:7929273)
InterPro RGD
PMID:7929273 PMID:15351637 PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
G
Gtf2f2
general transcription factor IIF subunit 2
involved_in
IDA IBA ISO IEA
PMID:7929273 PMID:21873635 (PMID:15351637) GO_REF:0000104
RGD UniProt
PMID:15351637 PMID:7929273 PMID:21873635
GO_REF:0000104, RGD:9681417 , RGD:13792537
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
G
Gtf2h5
general transcription factor IIH subunit 5
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
G
LOC103695118
transcription initiation factor IIA subunit 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
G
LOC120103497
general transcription factor IIH subunit 5-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
G
Maz
MYC associated zinc finger protein
involved_in
ISO
(PMID:1502157)
RGD
PMID:1502157
NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408
G
Polr2d
RNA polymerase II subunit D
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
G
Polr2g
RNA polymerase II subunit G
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
G
Polr2i
RNA polymerase II subunit I
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
G
Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
UniProtKB:Q60544 (PMID:17996705), (PMID:25412659)
RGD
PMID:17996705 PMID:25412659
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
G
Taf10
TATA-box binding protein associated factor 10
involved_in
ISO IBA
(PMID:9603525) PMID:21873635
RGD
PMID:9603525 PMID:21873635
RGD:13792537
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
G
Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
G
Taf2
TATA-box binding protein associated factor 2
involved_in
ISO IBA
(PMID:10409744), (PMID:9418870) PMID:21873635
RGD
PMID:9418870 PMID:10409744 PMID:21873635
RGD:13792537
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
G
Taf4
TATA-box binding protein associated factor 4
involved_in
ISO IBA
(PMID:12771217), (PMID:9603525) PMID:21873635
RGD
PMID:9603525 PMID:12771217 PMID:21873635
RGD:13792537
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
G
Taf4b
TATA-box binding protein associated factor 4b
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
G
Taf5
TATA-box binding protein associated factor 5
involved_in
ISO IBA
(PMID:9045704), (PMID:9603525) PMID:21873635
RGD
PMID:9045704 PMID:9603525 PMID:21873635
RGD:13792537
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
G
Taf6
TATA-box binding protein associated factor 6
involved_in
ISO
(PMID:15328371), (PMID:9603525)
RGD
PMID:9603525 PMID:15328371
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
G
Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:16407123), (PMID:9603525)
RGD
PMID:9603525 PMID:16407123
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
G
Taf8
TATA-box binding protein associated factor 8
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
G
Crcp
CGRP receptor component
involved_in
IEA IBA
GO_REF:0000002 PMID:21873635
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr12:26,623,968...26,659,756
Ensembl chr12:26,623,976...26,768,225
G
Gtf3c1
general transcription factor IIIC subunit 1
involved_in
IEA IBA
GO_REF:0000002 PMID:21873635
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr 1:180,203,995...180,270,201
Ensembl chr 1:180,203,995...180,270,201
G
Gtf3c4
general transcription factor IIIC subunit 4
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:12,154,803...12,172,795
Ensembl chr 3:12,154,805...12,172,725
G
Gtf3c5
general transcription factor IIIC subunit 5
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:11,893,867...11,914,187
Ensembl chr 3:11,893,875...11,914,180
G
Polr3h
RNA polymerase III subunit H
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:113,429,434...113,439,743
Ensembl chr 7:113,429,451...113,439,778
G
Vkorc1l1
vitamin K epoxide reductase complex, subunit 1-like 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr12:26,717,959...26,768,193
Ensembl chr12:26,623,976...26,768,225
G
Gtf2e1
general transcription factor IIE subunit 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
G
Brf1
BRF1, RNA polymerase III transcription initiation factor subunit
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:132,034,380...132,081,296
Ensembl chr 6:132,037,272...132,081,278
G
Brf2
BRF2, RNA polymerase III transcription initiation factor subunit
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
G
Gtf2b
general transcription factor IIB
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
G
Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:3046930 (MGI:3796491|PMID:18319258)
RGD
PMID:18319258
MGI:3796491
NCBI chr11:44,782,676...44,810,723
Ensembl chr11:44,782,676...44,810,723
G
Gtf2b
general transcription factor IIB
involved_in
IEA IBA ISS ISO
GO_REF:0000107 PMID:21873635 GO_REF:0000024 (PMID:10318856)
Ensembl UniProt RGD
PMID:10318856 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
G
Pcbp1
poly(rC) binding protein 1
involved_in
ISO
(PMID:12414943)
RGD
PMID:12414943
NCBI chr 4:118,972,698...118,974,722
Ensembl chr 4:118,972,661...118,976,500
G
Pcbp2
poly(rC) binding protein 2
involved_in
ISO
(PMID:12414943)
RGD
PMID:12414943
NCBI chr 7:133,605,480...133,631,312
Ensembl chr 7:133,605,573...133,629,863
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all