Tut7 (terminal uridylyl transferase 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tut7 (terminal uridylyl transferase 7) Rattus norvegicus
Analyze
Symbol: Tut7
Name: terminal uridylyl transferase 7
RGD ID: 1586015
Description: Predicted to enable RNA uridylyltransferase activity and miRNA binding activity. Predicted to be involved in RNA metabolic process; negative regulation of transposition, RNA-mediated; and oocyte maturation. Predicted to be located in cytosol and nucleoplasm. Orthologous to human TUT7 (terminal uridylyl transferase 7); PARTICIPATES IN microRNA pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC501515; similar to Zinc finger CCHC domain-containing protein 6; terminal uridylyltransferase 7; Zcchc6; zinc finger CCHC-type containing 6; zinc finger, CCHC domain containing 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,849,287 - 4,903,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,849,283 - 4,903,169 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0175,225,854 - 5,279,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,225,835 - 5,271,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,451,199 - 7,505,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,752,875 - 10,806,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera174,970,855 - 5,024,770 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. The long and short of microRNA. Yates LA, etal., Cell. 2013 Apr 25;153(3):516-9. doi: 10.1016/j.cell.2013.04.003.
Additional References at PubMed
PMID:17353264   PMID:18172165   PMID:22658674   PMID:22681889   PMID:25979828   PMID:28671666   PMID:28792939   PMID:30122351  


Genomics

Comparative Map Data
Tut7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,849,287 - 4,903,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,849,283 - 4,903,169 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0175,225,854 - 5,279,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,225,835 - 5,271,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,451,199 - 7,505,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,752,875 - 10,806,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera174,970,855 - 5,024,770 (+)NCBICelera
Cytogenetic Map17p14NCBI
TUT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,287,733 - 86,354,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl986,287,733 - 86,354,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,902,648 - 88,969,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36988,092,468 - 88,159,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 34986,132,203 - 86,198,923NCBI
Celera959,472,766 - 59,539,516 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef958,725,479 - 58,792,201 (-)NCBIHuRef
CHM1_1989,049,089 - 89,115,852 (-)NCBICHM1_1
T2T-CHM13v2.0998,438,962 - 98,505,656 (-)NCBIT2T-CHM13v2.0
Tut7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,919,690 - 59,971,060 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,919,375 - 59,970,961 (-)EnsemblGRCm39 Ensembl
GRCm381359,771,876 - 59,823,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,771,561 - 59,823,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,873,240 - 59,924,508 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,781,502 - 59,832,724 (-)NCBIMGSCv36mm8
Celera1360,831,422 - 60,882,680 (-)NCBICelera
Cytogenetic Map13B2NCBI
Tut7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,268,103 - 1,329,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,268,217 - 1,330,385 (+)NCBIChiLan1.0ChiLan1.0
TUT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1985,489,974 - 85,554,745 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl985,486,521 - 85,554,745 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0957,433,583 - 57,498,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TUT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,400,648 - 73,464,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,401,421 - 73,475,493 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,162,268 - 74,226,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0173,707,237 - 73,771,495 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl173,707,227 - 73,771,495 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1173,515,084 - 73,579,269 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0173,281,944 - 73,345,972 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0173,987,748 - 74,051,975 (+)NCBIUU_Cfam_GSD_1.0
Tut7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947119,984,394 - 120,043,816 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366801,693,815 - 1,753,641 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1028,995,565 - 29,061,176 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11028,995,564 - 29,061,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,038,194 - 33,103,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,920,632 - 96,987,114 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,920,021 - 96,986,165 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603885,271,931 - 85,337,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tut7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480911,031,693 - 11,084,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480911,030,422 - 11,094,754 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH127389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2174,902,707 - 4,902,887 (+)MAPPERmRatBN7.2
Rnor_6.0175,279,144 - 5,279,323NCBIRnor6.0
Rnor_5.0177,504,486 - 7,504,665UniSTSRnor5.0
RGSC_v3.41710,806,383 - 10,806,562UniSTSRGSC3.4
Celera175,024,240 - 5,024,419UniSTS
RH 3.4 Map1772.8UniSTS
Cytogenetic Map17p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:92
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000022373
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 57 41 19 41 8 9 74 35 37 11 8
Low 3 2 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006222320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022373   ⟹   ENSRNOP00000022373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,849,283 - 4,903,025 (+)Ensembl
Rnor_6.0 Ensembl175,225,835 - 5,271,794 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117724   ⟹   ENSRNOP00000093045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,849,310 - 4,903,025 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120026   ⟹   ENSRNOP00000085565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,849,283 - 4,903,169 (+)Ensembl
RefSeq Acc Id: XM_006253531   ⟹   XP_006253593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,417 - 4,895,137 (+)NCBI
Rnor_6.0175,226,066 - 5,271,573 (+)NCBI
Rnor_5.0177,451,199 - 7,505,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253532   ⟹   XP_006253594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,895,137 (+)NCBI
Rnor_6.0175,225,869 - 5,271,573 (+)NCBI
Rnor_5.0177,451,199 - 7,505,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253533   ⟹   XP_006253595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,287 - 4,895,137 (+)NCBI
Rnor_6.0175,225,854 - 5,271,573 (+)NCBI
Rnor_5.0177,451,199 - 7,505,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771464   ⟹   XP_008769686
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,903,542 (+)NCBI
Rnor_6.0175,225,869 - 5,279,674 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771465   ⟹   XP_008769687
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,903,542 (+)NCBI
Rnor_6.0175,225,870 - 5,279,674 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771466   ⟹   XP_008769688
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,903,542 (+)NCBI
Rnor_6.0175,225,870 - 5,279,674 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096239   ⟹   XP_038952167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,892 - 4,895,137 (+)NCBI
RefSeq Acc Id: XM_039096240   ⟹   XP_038952168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,895,137 (+)NCBI
RefSeq Acc Id: XM_039096241   ⟹   XP_038952169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,895,137 (+)NCBI
RefSeq Acc Id: XM_039096242   ⟹   XP_038952170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,903,542 (+)NCBI
RefSeq Acc Id: XM_039096243   ⟹   XP_038952171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,891,996 (+)NCBI
RefSeq Acc Id: XR_005495448
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2174,849,395 - 4,887,424 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006253595   ⟸   XM_006253533
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253594   ⟸   XM_006253532
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253593   ⟸   XM_006253531
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769686   ⟸   XM_008771464
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008769688   ⟸   XM_008771466
- Peptide Label: isoform X7
- UniProtKB: D3ZKR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769687   ⟸   XM_008771465
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000022373   ⟸   ENSRNOT00000022373
RefSeq Acc Id: XP_038952170   ⟸   XM_039096242
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038952168   ⟸   XM_039096240
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952169   ⟸   XM_039096241
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952171   ⟸   XM_039096243
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952167   ⟸   XM_039096239
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000093045   ⟸   ENSRNOT00000117724
RefSeq Acc Id: ENSRNOP00000085565   ⟸   ENSRNOT00000120026
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKR9-F1-model_v2 AlphaFold D3ZKR9 1-1479 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700274
Promoter ID:EPDNEW_R10795
Type:initiation region
Name:Zcchc6_1
Description:zinc finger CCHC-type containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0175,225,925 - 5,225,985EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 5251935 5251936 C A snv LE/Stm (RGD), SHRSP/Gcrc (RGD), FXLE16/Stm (2020), LEXF1A/Stm (2019), SHRSP/A3NCrl (2019), LEXF4/Stm (2020), FXLE18/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 4875393 4875394 C A snv FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), SHRSP/A3NCrl (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF2B/Stm (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586015 AgrOrtholog
BioCyc Gene G2FUF-10427 BioCyc
Ensembl Genes ENSRNOG00000016629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022373 ENTREZGENE
  ENSRNOP00000022373.8 UniProtKB/TrEMBL
  ENSRNOP00000085565 ENTREZGENE
  ENSRNOP00000085565.1 UniProtKB/TrEMBL
  ENSRNOP00000093045 ENTREZGENE
  ENSRNOP00000093045.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022373 ENTREZGENE
  ENSRNOT00000022373.8 UniProtKB/TrEMBL
  ENSRNOT00000117724 ENTREZGENE
  ENSRNOT00000117724.1 UniProtKB/TrEMBL
  ENSRNOT00000120026 ENTREZGENE
  ENSRNOT00000120026.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  TUTase_dom UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene 501515 ENTREZGENE
Pfam PAP_assoc UniProtKB/TrEMBL
  TUTase UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PhenoGen Tut7 PhenoGen
PROSITE ZF_CCHC UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF57756 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A8I6GE00_RAT UniProtKB/TrEMBL
  A0A8I6GKH2_RAT UniProtKB/TrEMBL
  D3ZKR9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-27 Tut7  terminal uridylyl transferase 7  Zcchc6  zinc finger CCHC-type containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-17 Zcchc6  zinc finger CCHC-type containing 6  Zcchc6  zinc finger, CCHC domain containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Zcchc6  zinc finger, CCHC domain containing 6  LOC501515  similar to Zinc finger CCHC domain-containing protein 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC501515  similar to Zinc finger CCHC domain-containing protein 6      Symbol and Name status set to provisional 70820 PROVISIONAL