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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification



show annotations for term's descendants           Sort by:
 
RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07061825.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Adad1 adenosine deaminase domain containing 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 2:119,948,809...120,005,920
Ensembl chr 2:119,948,926...120,005,913
JBrowse link
G Adad2 adenosine deaminase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:47,665,288...47,669,433
Ensembl chr19:47,665,309...47,669,436
JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in ISS
IEA
ISO
IBA
PMID:14759252
GO_REF:0000107
GO_REF:0000002
(PMID:9149227)
(PMID:32220291)
PMID:21873635
Ensembl
InterPro
RGD
PMID:9149227 PMID:32220291 PMID:14759252 PMID:21873635 GO_REF:0000002 GO_REF:0000107, RGD:8553748, RGD:13792537 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852
JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831
JBrowse link
G Ccnl1 cyclin L1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:150,184,865...150,199,524
Ensembl chr 2:150,184,798...150,197,368
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:17,367,455...17,380,507
Ensembl chr16:17,367,455...17,380,507
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Ddx54 DEAD-box helicase 54 involved_in ISO (PMID:12466272) RGD PMID:12466272 NCBI chr12:35,934,713...35,949,956
Ensembl chr12:35,934,716...35,972,523
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:2679763|PMID:14528307), (MGI:3775688|PMID:17804764) RGD PMID:14528307 PMID:17804764 MGI:2679763 MGI:3775688 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:17174896) RGD PMID:17174896 NCBI chr15:75,820,040...75,850,450
Ensembl chr15:75,823,436...75,850,642
JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease involved_in ISO (PMID:20531386) RGD PMID:20531386 NCBI chr 8:64,803,925...64,840,306
Ensembl chr 8:64,803,927...64,840,165
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Dnttip2 deoxynucleotidyltransferase, terminal, interacting protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:210,374,240...210,386,366
Ensembl chr 2:210,374,289...210,385,581
JBrowse link
G Drosha drosha ribonuclease III involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:17035636)
UniProt
RGD
PMID:17035636 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446
JBrowse link
G Exosc1 exosome component 1 involved_in IEA
ISO
GO_REF:0000002
GO_REF:0000107
(PMID:17174896), (PMID:20531386)
InterPro
Ensembl
RGD
PMID:17174896 PMID:20531386 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:240,734,777...240,745,518
Ensembl chr 1:240,734,773...240,745,438
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Exosc2 exosome component 2 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575
JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265
JBrowse link
G Exosc6 exosome component 6 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr19:39,021,308...39,023,535
Ensembl chr19:39,022,183...39,023,515
JBrowse link
G Exosc7 exosome component 7 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270
JBrowse link
G Exosc8 exosome component 8 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928
JBrowse link
G Exosc9 exosome component 9 involved_in IEA
ISO
GO_REF:0000002
(PMID:17174896), (PMID:20531386)
InterPro
RGD
PMID:17174896 PMID:20531386 GO_REF:0000002 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26370583)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26370583 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 TAS RGD PMID:7512260 RGD:1302261 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:81,228,404...81,264,121
Ensembl chr 1:81,228,404...81,262,592
JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:61,183,744...61,205,548
Ensembl chr 8:61,184,116...61,205,535
JBrowse link
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:58,668,326...58,670,222
Ensembl chr 5:58,668,327...58,670,220
JBrowse link
G LOC680385 similar to Sjogren syndrome antigen B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:149,078,162...149,079,669
Ensembl chr 4:149,078,162...149,079,657
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 9:81,106,658...81,111,709
Ensembl chr 9:81,106,655...81,112,812
JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191
JBrowse link
G Rnasel ribonuclease L involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO (PMID:21636784) RGD PMID:21636784 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295
JBrowse link
G Rtca RNA 3'-terminal phosphate cyclase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:204,455,175...204,476,450
Ensembl chr 2:204,455,175...204,476,460
JBrowse link
G Sfswap splicing factor SWAP involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203
JBrowse link
G Trmt2a tRNA methyltransferase 2 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:82,737,689...82,742,423
Ensembl chr11:82,737,689...82,742,336
JBrowse link
G U2surp U2 snRNP-associated SURP domain containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:96,018,932...96,075,795
Ensembl chr 8:96,022,957...96,075,691
JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443
JBrowse link
G Wbp11l1 WW domain-binding protein 11-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) RGD PMID:21266480 MGI:5317038 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096
JBrowse link
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO
IBA
(PMID:16687569)
PMID:21873635
RGD PMID:16687569 PMID:21873635 RGD:13792537 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399
JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
(PMID:20713356), (PMID:21310715)
GO_REF:0000104
UniProt
RGD
PMID:20713356 PMID:21310715 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr20:7,722,729...7,782,579
Ensembl chr20:7,709,713...7,766,302
JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA
(PMID:21310715)
PMID:21873635
RGD PMID:21310715 PMID:21873635 RGD:13792537 NCBI chr19:38,190,718...38,197,549
Ensembl chr19:38,190,642...38,197,804
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
ISS
(PMID:12434151)
GO_REF:0000024
RGD
UniProt
PMID:12434151 GO_REF:0000024 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) RGD PMID:22099306 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in IBA
ISO
PMID:21873635
(PMID:9473487)
RGD PMID:9473487 PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in IBA
ISO
ISS
PMID:21873635
(PMID:27422871), (PMID:9790902)
GO_REF:0000024
RGD
UniProt
PMID:9790902 PMID:27422871 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775
JBrowse link
7-methylguanosine RNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:16,524,864...16,558,399
Ensembl chr 5:16,524,874...16,558,399
JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07056845.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:37,066,520...37,067,514 JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO (MGI:3699439|PMID:17261272) RGD PMID:17261272 MGI:3699439 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) RGD PMID:19720736 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in IBA
ISO
PMID:21873635
(MGI:5883203|PMID:24910439)
(PMID:24275493), (PMID:24910439)
RGD PMID:24275493 PMID:24910439 PMID:21873635 MGI:5883203, RGD:13792537 NCBI chr 7:111,091,127...111,109,353
Ensembl chr 7:111,089,445...111,109,193
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)
RGD PMID:24275493 PMID:24910439 MGI:5883203 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) RGD PMID:28221134 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO MGI:1924661 (MGI:5699497|PMID:26371508) RGD PMID:26371508 MGI:5699497 NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062
JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1917326 (MGI:5699497|PMID:26371508)
Ensembl
RGD
PMID:26371508 GO_REF:0000107 MGI:5699497 NCBI chr19:34,034,559...34,041,726
Ensembl chr19:34,034,559...34,041,726
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (MGI:3575934|PMID:15798186) RGD PMID:15798186 MGI:3575934 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO
IEA
IBA
(PMID:19874820)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:19874820 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762
JBrowse link
G Insr insulin receptor IEP RGD PMID:23633480 RGD:9685423 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Kdm1a lysine demethylase 1A IEP RGD PMID:20164337 RGD:9588288 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:3821939|PMID:19075228), (MGI:5009479|PMID:19720736) RGD PMID:19075228 PMID:19720736 MGI:3821939 MGI:5009479 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in ISO
IBA
IEA
ISS
(PMID:23512658)
PMID:21873635
GO_REF:0000107
(MGI:5477858|PMID:23512658)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23512658 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5477858, RGD:13792537 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,782,770...107,793,814
Ensembl chr 7:107,782,770...107,794,531
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 acts_upstream_of_or_within ISO MGI:6442563 (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO
IBA
(PMID:17589525)
PMID:21873635
RGD PMID:17589525 PMID:21873635 RGD:13792537 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014
JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3575934|PMID:15798186)
RGD PMID:15798186 PMID:21873635 MGI:3575934, RGD:13792537 NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765
JBrowse link
G Scnm1 sodium channel modifier 1 involved_in ISO (MGI:3770352|PMID:17656373) RGD PMID:17656373 MGI:3770352 NCBI chr 2:182,700,883...182,705,119
Ensembl chr 2:182,700,348...182,704,835
JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO
IBA
(PMID:19874820)
PMID:21873635
RGD PMID:19874820 PMID:21873635 RGD:13792537 NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472
JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:84585|PMID:8940107)
Ensembl
RGD
PMID:8940107 GO_REF:0000107 MGI:84585 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
JBrowse link
G Smptb polypyrimidine tract-binding protein IDA RGD PMID:12578833 RGD:1299129 NCBI chr  X:16,609,016...16,610,898
Ensembl chr  X:16,599,038...16,600,920
Ensembl chr  X:16,599,038...16,600,920
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IMP
ISO
IBA
(PMID:8940107)
PMID:21873635
RGD PMID:8940107 PMID:23462647 PMID:21873635 RGD:11038736, RGD:13792537 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:22767602)
GO_REF:0000024
RGD
UniProt
PMID:22767602 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
box C/D RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,469,832...83,478,932
Ensembl chr 1:83,469,832...83,478,932
JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(MGI:6400674|PMID:32017896)
(PMID:32017898)
UniProt
Ensembl
RGD
PMID:32017896 PMID:32017898 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:6400674, RGD:13792537 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865
JBrowse link
box H/ACA RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560
JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
cleavage involved in rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:18325616) RGD PMID:18325616 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in IBA
ISO
PMID:21873635
(PMID:25288793)
RGD PMID:25288793 PMID:21873635 RGD:13792537 NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841
JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655
JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643
JBrowse link
G Kri1 KRI1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,817,015...19,831,516
Ensembl chr 8:19,817,017...19,831,392
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:28,947,730...28,956,790
Ensembl chr17:28,947,734...28,956,788
JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:28,947,730...28,956,790
Ensembl chr17:28,947,734...28,956,788
JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,824,524...226,869,046
Ensembl chr 1:226,824,534...226,902,315
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864
JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372
JBrowse link
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:25219674)
UniProt
RGD
PMID:25219674 GO_REF:0000024
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,751,310...14,755,213
Ensembl chr10:14,751,384...14,755,207
JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,017,759...106,023,010
Ensembl chr 3:106,017,864...106,023,251
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,553,230...146,562,794
Ensembl chr 4:146,558,562...146,562,794
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561
JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:174,140,831...174,168,757
Ensembl chr 1:174,141,993...174,168,665
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,016,146...131,143,347
Ensembl chr 5:131,016,126...131,143,329
JBrowse link
G Exosc10 exosome component 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575
JBrowse link
G Exosc3 exosome component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270
JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928
JBrowse link
G Exosc9 exosome component 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07024964.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr16:21,108,942...21,109,883 JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
G Yju2 YJU2 splicing factor homolog involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496
JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979
JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052587.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07064102.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07064998.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07065012.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07065013.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G C1d C1D nuclear receptor corepressor involved_in IBA
ISO
PMID:21873635
(PMID:17412707)
RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr14:91,660,951...91,673,177
Ensembl chr14:91,660,989...91,672,852
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) RGD PMID:17412707 PMID:20368444 NCBI chr 5:158,995,318...159,018,946
Ensembl chr 5:158,995,313...159,018,940
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) RGD PMID:20368444 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243
JBrowse link
G Mphosph6 M phase phosphoprotein 6 involved_in IBA
ISO
PMID:21873635
(PMID:17412707)
RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr19:45,860,152...45,870,077
Ensembl chr19:45,860,154...45,870,170
JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA
(PMID:17412707)
PMID:21873635
RGD PMID:17412707 PMID:21873635 RGD:13792537 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627
JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) RGD PMID:21063389 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rpf1 ribosome production factor 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370
JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO
ISS
(PMID:16738141)
GO_REF:0000024
RGD
UniProt
PMID:16738141 GO_REF:0000024 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO
IBA
ISS
(PMID:16043514)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16043514 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469
JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:259,826,698...259,827,548 JBrowse link
G AABR07018167.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:42,188,259...42,189,095 JBrowse link
G AABR07027819.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:43,254,214...43,255,377 JBrowse link
G AABR07029262.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:18,291,363...18,292,163 JBrowse link
G AABR07030630.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:93,364,092...93,364,568 JBrowse link
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07045321.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:40,814,078...40,814,928 JBrowse link
G AABR07049918.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:139,195,914...139,196,714 JBrowse link
G AABR07052519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:57,334,747...57,335,597 JBrowse link
G AABR07052587.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07054456.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07057586.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC094246.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC128901.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:148,270,351...148,271,151 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:60,851,969...60,873,717
Ensembl chr  X:60,851,962...60,873,687
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758
JBrowse link
G LOC103690888 60S ribosomal protein L10a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:104,902,239...104,902,979
Ensembl chr  X:104,902,239...104,902,892
JBrowse link
G LOC108348298 ribosomal L1 domain-containing protein 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC108349606 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr18:4,172,029...4,172,931 JBrowse link
G LOC680700 similar to ribosomal protein L10a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:134,578,540...134,579,373
Ensembl chr 5:134,578,565...134,579,341
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,972,699...60,981,250
Ensembl chr16:60,972,697...60,983,243
JBrowse link
G Mrpl1 mitochondrial ribosomal protein L1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:13,300,522...13,359,654
Ensembl chr14:13,300,522...13,359,721
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,877,015...35,880,409
Ensembl chr10:35,877,054...35,882,545
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:28,443,142...28,449,393
Ensembl chr 2:28,441,269...28,449,388
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
JBrowse link
G Rpf1 ribosome production factor 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:235,403,020...235,417,546
Ensembl chr 2:235,403,021...235,417,807
JBrowse link
G Rpl10a ribosomal protein L10A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,388,800...6,391,358
Ensembl chr20:6,385,823...6,391,357
JBrowse link
G Rpl7a ribosomal protein L7a involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,239,026...10,241,703
Ensembl chr 3:10,239,001...10,241,716
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:98,276,276...98,299,357
Ensembl chr13:98,276,134...98,299,370
JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,424,868...4,436,753
Ensembl chr10:4,397,821...4,439,593
JBrowse link
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872
JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008724.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:70,904,506...70,905,278 JBrowse link
G AABR07013798.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07030263.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07031666.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07037343.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07063704.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:40,423,832...40,424,203 JBrowse link
G AABR07073381.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC103056.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC121415.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:32,995,363...32,996,204 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
ISS
IBA
(PMID:17353269)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:17353269 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931
JBrowse link
G Ddx18 DEAD-box helicase 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:32,729,697...32,743,161
Ensembl chr13:32,729,700...32,743,161
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,180,945...91,187,389
Ensembl chr10:91,180,696...91,187,397
JBrowse link
G Gtpbp4 GTP binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5617283|PMID:25190460)
Ensembl
RGD
PMID:25190460 GO_REF:0000107 MGI:5617283 NCBI chr17:61,308,033...61,328,184
Ensembl chr17:61,308,014...61,418,009
JBrowse link
G LOC367050 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:30,634,173...30,634,690
Ensembl chr 8:30,634,325...30,634,690
JBrowse link
G LOC686074 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,159,401...23,159,843
Ensembl chr18:23,159,441...23,159,812
JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:5617283|PMID:25190460)
(PMID:16738141), (PMID:17353269)
GO_REF:0000024
RGD
UniProt
PMID:16738141 PMID:17353269 PMID:25190460 PMID:21873635 GO_REF:0000024 MGI:5617283, RGD:13792537 NCBI chr14:78,850,754...78,867,134
Ensembl chr14:78,850,709...78,867,134
JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509
JBrowse link
G Rpl35 ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Rpl7 ribosomal protein L7 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 5:3,217,184...3,220,192 JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,004,539...30,065,315
Ensembl chr11:30,004,539...30,065,363
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:16043514), (PMID:17353269)
UniProt
RGD
PMID:16043514 PMID:17353269 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:61,475,498...61,502,584
Ensembl chr 9:61,475,517...61,502,469
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,780,210...69,790,446
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960
JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ddx52 DExD-box helicase 52 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:68,824,594...68,847,400
Ensembl chr10:68,824,645...68,848,266
JBrowse link
G LOC100359503 ribosomal protein S28-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,888,391...65,888,702
Ensembl chr16:65,888,416...65,888,625
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758
JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484
JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:29,098,254...29,112,858
Ensembl chr19:29,098,214...29,118,682
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:35,322,803...35,335,354
Ensembl chr19:35,322,669...35,346,815
JBrowse link
G Nol11 nucleolar protein 11 involved_in IBA
ISO
PMID:21873635
(PMID:22916032)
RGD PMID:22916032 PMID:21873635 RGD:13792537 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677
JBrowse link
G Nop14 NOP14 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:76,081,318...76,102,454
Ensembl chr14:76,080,793...76,102,453
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
JBrowse link
G Riok1 RIO kinase 1 involved_in IBA
ISO
PMID:21873635
(PMID:22072790)
RGD PMID:22072790 PMID:21873635 RGD:13792537 NCBI chr17:26,767,440...26,789,900
Ensembl chr17:26,766,947...26,789,900
JBrowse link
G Riok2 RIO kinase 2 involved_in ISO
IBA
(PMID:19564402)
PMID:21873635
RGD PMID:19564402 PMID:21873635 RGD:13792537 NCBI chr 1:58,103,132...58,119,397
Ensembl chr 1:58,103,084...58,120,512
JBrowse link
G Riok3 RIO kinase 3 involved_in IBA
ISO
PMID:21873635
(PMID:22418843)
RGD PMID:22418843 PMID:21873635 RGD:13792537 NCBI chr18:3,327,776...3,353,350
Ensembl chr18:3,327,776...3,353,343
JBrowse link
G Rps14 ribosomal protein S14 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:113,565,903...113,570,871
Ensembl chr 7:113,565,295...113,570,872
JBrowse link
G Srfbp1 serum response factor binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:45,920,389...45,945,385
Ensembl chr18:45,920,446...45,942,515
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,257,150...14,259,712
Ensembl chr10:14,257,171...14,259,561
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
JBrowse link
G Wdr3 WD repeat domain 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:187,505,816...187,528,432
Ensembl chr 2:187,505,816...187,528,432
JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07019341.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07021945.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07051796.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07053635.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:112,838,854...112,839,309 JBrowse link
G AABR07056611.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:25,964,209...25,964,541 JBrowse link
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127
JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,160,983...70,196,142
Ensembl chr 7:70,160,941...70,196,142
JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:31,194,782...31,214,890
Ensembl chr12:31,194,859...31,216,802
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:58,051,700...58,093,895
Ensembl chr17:58,051,700...58,093,948
JBrowse link
G Helb DNA helicase B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G LOC100363452 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:98,586,109...98,586,784
Ensembl chr 3:98,586,108...98,586,808
JBrowse link
G LOC100911847 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,350,191...138,350,766 JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:92,259,763...92,260,218
Ensembl chr15:92,259,763...92,260,203
JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:3,392,846...3,393,523
Ensembl chr 5:3,389,210...3,393,500
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:132,707,601...132,717,253
Ensembl chr 1:132,680,420...132,717,253
JBrowse link
G Ngdn neuroguidin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,489,950...28,497,286
Ensembl chr15:28,490,040...28,519,654
JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,144,217...40,225,353
Ensembl chr 6:40,144,235...40,225,353
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G RGD1561137 similar to 40S ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,494,155...21,494,684
Ensembl chr 3:21,494,203...21,494,676
JBrowse link
G RGD1566369 similar to ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:83,759,360...83,760,027
Ensembl chr17:83,759,369...83,760,019
JBrowse link
G Rps14 ribosomal protein S14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,630,362...130,632,932
Ensembl chr 5:130,629,716...130,633,268
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,308,810...14,316,959
Ensembl chr 9:14,308,982...14,316,110
JBrowse link
G Slx9 SLX9 ribosome biogenesis factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,114,632...11,147,532
Ensembl chr20:11,114,589...11,147,521
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864
JBrowse link
G Tsr2 TSR2, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:20,064,102...20,072,673
Ensembl chr  X:20,064,103...20,072,620
JBrowse link
G Utp25 UTP25, small subunit processor component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:104,630,390...104,651,681
Ensembl chr13:104,630,391...104,651,662
JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:19,515,716...19,517,370
Ensembl chr14:19,515,669...19,517,396
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,790,962...34,820,558
Ensembl chr19:34,792,457...34,820,550
JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:64,897,321...64,928,105
Ensembl chr10:64,897,328...64,927,997
JBrowse link
G Wdr46 WD repeat domain 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,937,845...4,945,796
Ensembl chr20:4,937,847...4,946,535
JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:28335001)
UniProt
RGD
PMID:28335001 GO_REF:0000024 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756
JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA
(PMID:18083837)
PMID:21873635
RGD PMID:18083837 PMID:21873635 RGD:13792537 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:19864255)
UniProt
Ensembl
RGD
PMID:19864255 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054
JBrowse link
mitochondrial RNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
(PMID:21593607)
GO_REF:0000024
RGD
UniProt
PMID:21593607 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastk Fas-activated serine/threonine kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,732,273...10,736,332
Ensembl chr 4:10,732,256...10,737,430
JBrowse link
G Fastkd1 FAST kinase domains 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:54,449,710...54,475,624
Ensembl chr 3:54,449,711...54,475,540
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:34,858,342...34,866,988
Ensembl chr 1:34,858,219...34,866,973
JBrowse link
G Fastkd5 FAST kinase domains 5 involved_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:117,830,227...117,847,737 JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756
JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29040705)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO (PMID:11504732) RGD PMID:11504732 NCBI chr 4:139,681,115...139,703,611
Ensembl chr 4:139,680,858...139,703,611
JBrowse link
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in IBA
ISS
ISO
IEA
PMID:21873635
GO_REF:0000024
(PMID:21593607)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21593607 PMID:21873635 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614
JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in IBA
ISO
ISS
PMID:21873635
(PMID:25953853), (PMID:29880640)
GO_REF:0000024
RGD
UniProt
PMID:25953853 PMID:29880640 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:72,669,659...72,762,419
Ensembl chr 6:72,670,847...72,762,416
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:29040705), (PMID:29880640)
UniProt
RGD
PMID:29040705 PMID:29880640 GO_REF:0000024 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23042678), (PMID:25925575), (PMID:28888424)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,089,152...21,091,597
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
IEA
(PMID:23042678)
GO_REF:0000107
RGD
Ensembl
PMID:23042678 GO_REF:0000107 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in IBA
ISO
PMID:21873635
(PMID:26189817)
RGD PMID:26189817 PMID:21873635 RGD:13792537 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:5635958 NCBI chr 3:142,838,081...142,872,669
Ensembl chr 3:142,708,028...142,872,677
JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:226,669,445...226,684,166
Ensembl chr 2:226,669,832...226,684,151
JBrowse link
G Trmt10b tRNA methyltransferase 10B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:59,548,845...59,572,529
Ensembl chr 5:59,548,869...59,572,526
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
IBA
(PMID:27132592)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:27132592 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:44,584,388...44,589,466
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
SGD:S000003205 (MGI:2677576|PMID:14522080)
RGD PMID:14522080 PMID:21873635 MGI:2677576, RGD:13792537 NCBI chr 8:79,309,681...79,335,231
Ensembl chr 8:79,309,982...79,335,231
JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:161,144,533...161,156,294
Ensembl chr 3:161,144,548...161,156,300
JBrowse link
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO (PMID:30507380) RGD PMID:30507380 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO (PMID:20695905) RGD PMID:20695905 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338
JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452
JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407
JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 acts_upstream_of_or_within ISO (MGI:3619747|PMID:16115198) RGD PMID:16115198 MGI:3619747 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451
JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IBA
ISO
PMID:21873635
(PMID:18688255)
RGD PMID:18688255 PMID:21873635 RGD:13792537 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IBA
(PMID:18688255)
(MGI:4418605|PMID:18955505)
PMID:21873635
RGD PMID:18688255 PMID:18955505 PMID:21873635 MGI:4418605, RGD:13792537 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G LOC100363294 stem-loop binding protein-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577
JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:138,365,983...138,375,856
Ensembl chr 5:138,373,119...138,377,505
JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in IBA
ISO
PMID:21873635
(PMID:33230297)
(MGI:2676509|PMID:12975319)
RGD PMID:12975319 PMID:33230297 PMID:21873635 MGI:2676509, RGD:13792537 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944
JBrowse link
G Slbp stem-loop binding protein involved_in IBA
ISO
PMID:21873635
(MGI:4353869|PMID:19470752)
RGD PMID:19470752 PMID:21873635 MGI:4353869, RGD:13792537 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906
JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325
JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825
JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 involved_in ISO
IEA
ISS
(PMID:9885563)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257
JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
(MGI:84585|PMID:8940107)
PMID:21873635
Ensembl
RGD
PMID:8940107 PMID:21873635 GO_REF:0000107 MGI:84585, RGD:13792537 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905), (PMID:23187700), (PMID:29276085) RGD PMID:20695905 PMID:23187700 PMID:29276085 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISO
ISS
(PMID:29276085)
GO_REF:0000024
RGD
UniProt
PMID:29276085 GO_REF:0000024 NCBI chr 1:207,167,690...207,191,865
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)
UniProt
RGD
PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341
JBrowse link
G Ythdc1 YTH domain containing 1 acts_upstream_of_or_within ISO (MGI:6161521|PMID:29799838) RGD PMID:29799838 MGI:6161521 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008904.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Cactin cactin, spliceosome C complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829
JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:18426921)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18426921 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:33,468,669...33,524,407 JBrowse link
G LOC310177 similar to RIKEN cDNA 0610040D20 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:76,016,636...76,017,401
Ensembl chr 2:76,016,684...76,017,358
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:18426921)
UniProt
RGD
PMID:18426921 GO_REF:0000024 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886
JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052
JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014
JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO
ISS
(PMID:22246180)
GO_REF:0000024
RGD
UniProt
PMID:22246180 GO_REF:0000024 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569
JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443
JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO
ISS
(PMID:19592703)
GO_REF:0000024
RGD
UniProt
PMID:19592703 GO_REF:0000024 NCBI chr15:54,862,700...54,890,668
Ensembl chr15:54,862,843...54,890,647
JBrowse link
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:21317875) RGD PMID:21317875 NCBI chr10:91,326,889...91,421,201
Ensembl chr10:91,330,654...91,421,029
JBrowse link
mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase-like 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19224921)
(MGI:3848108|PMID:19224921)
RGD PMID:19224921 MGI:3848108 NCBI chr 2:195,294,149...195,328,586
Ensembl chr 2:195,294,153...195,345,815
JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (MGI:3610697|PMID:16314516) RGD PMID:16314516 MGI:3610697 NCBI chr 1:85,696,880...85,707,215
Ensembl chr 1:85,696,882...85,707,155
JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3610697|PMID:16314516)
UniProt
RGD
PMID:16314516 GO_REF:0000024 MGI:3610697 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Cdc73 cell division cycle 73 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21329879)
Ensembl
UniProt
RGD
PMID:21329879 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 involved_in IBA
ISO
PMID:21873635
(PMID:7590244)
RGD PMID:7590244 PMID:21873635 RGD:13792537 NCBI chr 7:108,319,429...108,330,023
Ensembl chr 7:108,319,434...108,329,934
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO
GO_REF:0000024
(PMID:21329879)
UniProt
RGD
PMID:21329879 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO
IBA
(PMID:21292163)
PMID:21873635
RGD PMID:21292163 PMID:21873635 RGD:13792537 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5437387|PMID:22621333) RGD PMID:22621333 MGI:5437387 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO
GO_REF:0000024
(PMID:21329879)
UniProt
RGD
PMID:21329879 GO_REF:0000024 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Papola poly (A) polymerase alpha involved_in IBA
ISO
PMID:21873635
(PMID:19224921), (PMID:7590244)
RGD PMID:7590244 PMID:19224921 PMID:21873635 RGD:13792537 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
JBrowse link
G Papolg poly(A) polymerase gamma involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20861839)
UniProt
RGD
PMID:20861839 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
JBrowse link
G Sympk symplekin scaffold protein involved_in IBA
ISO
PMID:21873635
(PMID:20861839)
RGD PMID:20861839 PMID:21873635 RGD:13792537 NCBI chr 1:78,672,326...78,700,684
Ensembl chr 1:78,672,378...78,700,684
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18288197), (PMID:21102410)
UniProt
RGD
PMID:18288197 PMID:21102410 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764
JBrowse link
G Wdr33 WD repeat domain 33 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597
JBrowse link
mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354
JBrowse link
G AABR07031533.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AABR07035787.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr12:19,392,625...19,406,095 JBrowse link
G AABR07051190.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07065078.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Adar adenosine deaminase, RNA-specific involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852
JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:61,750,437...62,300,984
Ensembl chr17:61,756,067...62,300,831
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:17594903) RGD PMID:17594903 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275
JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23177736)
UniProt
RGD
PMID:23177736 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:45,344,888...45,366,331
Ensembl chr10:45,343,395...45,366,331
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Apobec4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:64,887,019...64,895,053
Ensembl chr13:64,887,012...64,895,053
JBrowse link
G Arl6ip4 ADP-ribosylation factor like GTPase 6 interacting protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:32,479,623...32,481,768
Ensembl chr12:32,479,625...32,481,799
JBrowse link
G Brdt bromodomain testis associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:2,421,094...2,445,842
Ensembl chr14:2,387,796...2,445,842
JBrowse link
G C1qbp complement C1q binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,699,954...55,704,605
Ensembl chr10:55,699,954...55,704,649
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
JBrowse link
G Cir1 corepressor interacting with RBPJ, CIR1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:58,159,418...58,188,719
Ensembl chr 3:58,158,951...58,188,789
JBrowse link
G Clasrp CLK4-associating serine/arginine rich protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:79,232,260...79,256,462
Ensembl chr 1:79,232,261...79,256,354
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:14690600) RGD PMID:14690600 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Csdc2 cold shock domain containing C2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:113,451,998...113,466,464
Ensembl chr 7:113,451,998...113,466,463
JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196
JBrowse link
G Ctnnbl1 catenin, beta like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:146,387,940...146,548,987
Ensembl chr 3:146,387,889...146,548,987
JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:44,820,693...44,837,935
Ensembl chr  X:44,820,820...44,837,934
JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:33,468,669...33,524,407 JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:176,726,454...176,743,289
Ensembl chr 1:176,726,454...176,743,289
JBrowse link
G Fam172a family with sequence similarity 172, member A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
JBrowse link
G Fblim1 filamin binding LIM protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:153,883,946...153,915,524
Ensembl chr 5:153,883,960...153,913,757
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Gpatch1 G patch domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:87,925,606...87,974,544
Ensembl chr 1:87,925,618...87,974,544
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:934,931...957,604
Ensembl chr17:935,654...957,565
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA
ISO
GO_REF:0000002
(PMID:2557628)
InterPro
RGD
PMID:2557628 GO_REF:0000002 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306
JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553
JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:14,969,953...15,000,574
Ensembl chr 6:14,970,057...14,999,745
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:142,051,844...142,089,175
Ensembl chr 5:142,063,570...142,089,180
JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530
JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IDA RGD PMID:11118435 RGD:632715 NCBI chr 7:100,837,707...100,995,644
Ensembl chr 7:100,837,934...100,988,460
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,862,555...1,872,301
Ensembl chr 9:1,862,899...1,872,451
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:215,997,641...216,012,833
Ensembl chr 2:215,997,649...216,012,865
JBrowse link
G Lgals3 galectin 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:20,620,083...20,632,019
Ensembl chr15:20,607,692...20,632,025
JBrowse link
G LOC679894 similar to THO complex subunit 2 (Tho2) involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:5,197,093...5,234,960
Ensembl chr14:5,197,003...5,235,453
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852
JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
JBrowse link
G Mbnl2 muscleblind-like splicing regulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:97,385,238...97,542,924
Ensembl chr15:97,385,244...97,542,937
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (MGI:5527005|PMID:24209618) RGD PMID:24209618 MGI:5527005 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:61,880,807...61,914,471
Ensembl chr10:61,880,825...61,914,471
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
ISS
IBA
(PMID:8626397)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8626397 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:729,146...747,744
Ensembl chr 7:729,562...747,744
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:7,476,707...7,595,380
Ensembl chr12:7,476,697...7,599,204
JBrowse link
G Pdcd11 programmed cell death 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:245,980,840...246,021,999
Ensembl chr 1:245,980,880...246,021,999
JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:1,915,386...1,925,427
Ensembl chr16:1,915,386...1,925,887
JBrowse link
G Phrf1 PHD and ring finger domains 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:196,333,663...196,366,901
Ensembl chr 1:196,333,903...196,366,892
JBrowse link
G Pnn pinin, desmosome associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889
JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in IEA
ISO
GO_REF:0000107
(PMID:17594903)
Ensembl
RGD
PMID:17594903 GO_REF:0000107 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
JBrowse link
G Prmt9 protein arginine methyltransferase 9 involved_in ISO (PMID:25737013) RGD PMID:25737013 NCBI chr19:30,376,342...30,414,491
Ensembl chr19:30,380,124...30,414,458
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979
JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:196,553,224...196,562,271
Ensembl chr 2:196,553,225...196,562,250
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in IMP
IEA
GO_REF:0000043 UniProt
RGD
PMID:16177139 GO_REF:0000043, RGD:10045980 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397
JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:74,313,536...74,399,439
Ensembl chr 5:74,315,101...74,399,791
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:107,782,770...107,793,814
Ensembl chr 7:107,782,770...107,794,531
JBrowse link
G Qk quaking, KH domain containing RNA binding IMP RGD PMID:21253564 RGD:10045996 NCBI chr 1:50,387,698...50,501,568
Ensembl chr 1:50,387,698...50,498,831
JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:177,503,988...177,537,397
Ensembl chr 1:177,503,313...177,535,678
JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:8,152,198...10,248,120
Ensembl chr10:8,152,198...9,686,659
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
G Rbfox3 RNA binding fox-1 homolog 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,720,355...104,157,277
Ensembl chr10:103,720,636...104,156,935
JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:10,267,026...10,270,510 JBrowse link
G Rbm26 RNA binding motif protein 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:81,884,783...81,964,245
Ensembl chr15:81,887,219...81,964,118
JBrowse link
G Rbm27 RNA binding motif protein 27 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:34,273,527...34,336,124
Ensembl chr18:34,273,527...34,334,126
JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:144,662,998...144,696,222
Ensembl chr 3:144,663,001...144,696,213
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380
JBrowse link
G Rbmxl1b RNA binding motif protein, X-linked-like 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:43,956,265...43,957,973
Ensembl chr 4:43,956,281...43,957,944
JBrowse link
G Rnasel ribonuclease L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704
JBrowse link
G Scaf1 SR-related CTD-associated factor 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:95,485,448...95,499,389
Ensembl chr 1:95,485,448...95,496,029
JBrowse link
G Scaf4 SR-related CTD-associated factor 4 IMP RGD PMID:8692929 RGD:1299392 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Smndc1 survival motor neuron domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:252,389,675...252,400,749
Ensembl chr 1:252,389,673...252,401,616
JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:119,123,676...119,133,234
Ensembl chr 4:119,121,877...119,133,234
JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) RGD PMID:21504830 NCBI chr11:30,850,890...30,923,167
Ensembl chr11:30,892,005...30,923,167
JBrowse link
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:34,849,552...34,885,120
Ensembl chr 2:34,852,458...34,884,972
JBrowse link
G Srek1ip1 SREK1-interacting protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:35,976,045...35,999,630 JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in IBA
ISO
PMID:21873635
(MGI:4414616|PMID:19737518)
RGD PMID:19737518 PMID:21873635 MGI:4414616, RGD:13792537 NCBI chr12:39,998,975...40,158,897
Ensembl chr12:39,999,488...40,155,725
JBrowse link
G Sugp1 SURP and G patch domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,352,659...19,383,533
Ensembl chr16:19,351,793...19,383,756
JBrowse link
G Sugp2 SURP and G patch domain containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:19,159,951...19,191,412
Ensembl chr16:19,164,767...19,191,340
JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515
JBrowse link
G Tardbp TAR DNA binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055
JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) RGD PMID:20215116 NCBI chr18:34,505,708...34,566,470
Ensembl chr18:34,505,751...34,566,470
JBrowse link
G Tdrd3 tudor domain containing 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110
JBrowse link
G Thoc2 THO complex 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513
JBrowse link
G Thoc5 THO complex 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718
JBrowse link
G Thoc6 THO complex 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:12,700,051...12,705,411
Ensembl chr10:12,700,051...12,706,925
JBrowse link
G Thoc7 THO complex 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:11,262,362...11,277,200
Ensembl chr15:11,262,613...11,277,193
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930
JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:148,602,805...148,638,219
Ensembl chr 4:148,602,863...148,638,215
JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:24,961,208...25,024,660
Ensembl chr 5:24,960,778...25,023,341
JBrowse link
G Wtap WT1 associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:47,665,965...47,691,067
Ensembl chr 1:47,665,965...47,691,065
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
JBrowse link
G Ybx1 Y box binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:132,882,137...132,899,108
Ensembl chr 5:132,882,145...132,898,862
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748
JBrowse link
G Zfp830 zinc finger protein 830 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:246,573,110...246,586,942
Ensembl chr 2:246,573,166...246,586,942
JBrowse link
mRNA splice site selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1930458|PMID:11158314)
(PMID:11158314)
RGD PMID:11158314 PMID:21873635 MGI:1930458, RGD:13792537 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:11158314)
(MGI:1930458|PMID:11158314)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:11158314 PMID:21873635 GO_REF:0000107 MGI:1930458, RGD:13792537 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1930458|PMID:11158314)
RGD PMID:11158314 PMID:21873635 MGI:1930458, RGD:13792537 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041
JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504
JBrowse link
G Luc7l LUC7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112
JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:2682447|PMID:14671308), (MGI:3655436|PMID:16717059) RGD PMID:14671308 PMID:16717059 MGI:2682447 MGI:3655436 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
JBrowse link
G Nol3 nucleolar protein 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:10196175)
UniProt
Ensembl
RGD
PMID:10196175 GO_REF:0000024 GO_REF:0000107 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO MGI:4124189 (MGI:1859428|PMID:10829067), (MGI:5430666|PMID:22802532) RGD PMID:10829067 PMID:22802532 MGI:1859428 MGI:5430666 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:107,782,770...107,793,814
Ensembl chr 7:107,782,770...107,794,531
JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743
JBrowse link
G Rbmxl1 RBMX like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:148,088,765...148,102,964
Ensembl chr 5:148,088,823...148,101,768
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:12549914)
GO_REF:0000024
RGD
UniProt
PMID:12549914 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20167602)
UniProt
RGD
PMID:20167602 GO_REF:0000024 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:11779464), (PMID:19328063), (PMID:19622636), (PMID:20625543), (PMID:21317875) RGD PMID:11779464 PMID:19328063 PMID:19622636 PMID:20625543 PMID:21317875 NCBI chr10:91,326,889...91,421,201
Ensembl chr10:91,330,654...91,421,029
JBrowse link
mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008911.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07037800.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:29,333,112...29,334,044 JBrowse link
G AABR07042226.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07054367.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:143,119,093...143,156,249 JBrowse link
G AABR07055789.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:7,402,914...7,407,032 JBrowse link
G AC113901.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AC126899.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:40,146,975...40,147,500 JBrowse link
G Aqr aquarius intron-binding spliceosomal factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044
JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
JBrowse link
G Bud13 BUD13 homolog involved_in ISO
IBA
IEA
ISS
(PMID:29360106)
PMID:21873635
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29360106 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:46,575,124...46,590,964
Ensembl chr 8:46,575,115...46,590,958
JBrowse link
G Bud31 BUD31 homolog involved_in ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346 PMID:21873635 RGD:13792537 NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509
JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:29301961)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:29301961 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:28076346), (PMID:33220177) RGD PMID:28076346 PMID:33220177 NCBI chr20:44,273,080...44,325,610
Ensembl chr20:44,273,089...44,325,358
JBrowse link
G Cdc5l cell division cycle 5-like involved_in ISO
IBA
ISS
(PMID:28076346)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:28076346 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000024
(PMID:28076346)
InterPro
UniProt
RGD
PMID:28076346 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 6:1,140,615...1,142,918
Ensembl chr 3:1,140,615...1,142,918
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in ISS
ISO
GO_REF:0000024
(PMID:28076346)
UniProt
RGD
PMID:28076346 GO_REF:0000024 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog involved_in IBA
ISO
PMID:21873635
(PMID:29360106)
RGD PMID:29360106 PMID:21873635 RGD:13792537 NCBI chr 3:62,815,230...62,864,269
Ensembl chr 3:62,802,045...62,864,228
JBrowse link
G Cwc25 CWC25 spliceosome-associated protein homolog involved_in IBA
ISO
PMID:21873635
(PMID:29301961)
RGD PMID:29301961 PMID:21873635 RGD:13792537 NCBI chr10:82,735,698...82,760,373
Ensembl chr10:82,736,995...82,760,354
JBrowse link
G Cwf19l1 CWF19 like cell cycle control factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,997,720...243,020,989
Ensembl chr 1:242,997,726...243,020,961
JBrowse link
G Cwf19l2 CWF19 like cell cycle control factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:290,148...356,636
Ensembl chr 6:281,685...356,604
JBrowse link
G Dbr1 debranching RNA lariats 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1890021|PMID:10982890)
RGD PMID:10982890 PMID:21873635 MGI:1890021, RGD:13792537 NCBI chr 8:100,139,039...100,150,768
Ensembl chr 8:100,139,034...100,151,030
JBrowse link
G Ddx23 DEAD-box helicase 23 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949
JBrowse link
G Ddx39a DExD-box helicase 39A involved_in IBA
ISO
PMID:21873635
UniProtKB:Q07478 (PMID:15047853)
RGD PMID:15047853 PMID:21873635 RGD:13792537 NCBI chr19:24,418,743...24,427,422
Ensembl chr19:24,418,114...24,426,954
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO
IBA
UniProtKB:Q07478 (PMID:15047853)
PMID:21873635
RGD PMID:15047853 PMID:21873635 RGD:13792537 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in ISO
IBA
(PMID:25920683)
PMID:21873635
RGD PMID:25920683 PMID:21873635 RGD:13792537 NCBI chr17:9,102,926...9,108,415
Ensembl chr17:9,103,010...9,108,415
JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:8,944,197...8,988,476
Ensembl chr17:8,944,454...8,988,439
JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in ISO (PMID:20423332), (PMID:25296192), (PMID:29360106) RGD PMID:20423332 PMID:25296192 PMID:29360106 NCBI chr20:2,862,000...2,874,991
Ensembl chr20:2,862,000...2,874,948
JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in ISO
IBA
(PMID:9524131)
PMID:21873635
RGD PMID:9524131 PMID:21873635 RGD:13792537 NCBI chr19:37,512,891...37,530,140
Ensembl chr19:37,512,891...37,530,140
JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:86,667,641...86,705,454
Ensembl chr10:86,667,834...86,705,137
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346 PMID:21873635 RGD:13792537 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISS
ISO
GO_REF:0000024
(PMID:29301961)
UniProt
RGD
PMID:29301961 GO_REF:0000024 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962
JBrowse link
G Gpkow G patch domain and KOW motifs involved_in IBA
ISO
PMID:21873635
(PMID:25296192)
RGD PMID:25296192 PMID:21873635 RGD:13792537 NCBI chr  X:14,791,601...14,806,384
Ensembl chr  X:14,791,610...14,806,384
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26321680)
UniProt
Ensembl
RGD
PMID:26321680 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO
ISS
(PMID:25719671)
GO_REF:0000024
RGD
UniProt
PMID:25719671 GO_REF:0000024 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762
JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607
JBrowse link
G Ik IK cytokine involved_in ISO
ISS
IBA
(PMID:28781166)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:28781166 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:28,358,004...28,372,809
Ensembl chr18:28,357,977...28,378,832
JBrowse link
G Isy1 ISY1 splicing factor homolog involved_in ISO
ISS
(PMID:29301961)
GO_REF:0000024
RGD
UniProt
PMID:29301961 GO_REF:0000024 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:259,716,062...259,716,923
Ensembl chr 1:259,715,711...259,716,758
JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484
JBrowse link
G LOC102548514 crooked neck-like protein 1-like involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537
G LOC108348453 calsequestrin-1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:5,545,034...5,593,179
Ensembl chr16:5,549,839...5,593,185
JBrowse link
G LOC500684 hypothetical protein LOC500684 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:67,152,834...67,154,825 JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:87,982,659...87,983,067
Ensembl chr 1:87,982,626...87,983,118
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA
ISO
PMID:21873635
(PMID:28781166)
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:10369684), (PMID:10523320)
(PMID:28781166)
RGD PMID:10369684 PMID:10523320 PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr19:29,098,254...29,112,858
Ensembl chr19:29,098,214...29,118,682
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr 7:8,856,666...8,859,119
Ensembl chr 7:8,856,489...8,859,119
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 4:47,306,259...47,312,125
Ensembl chr 4:47,306,295...47,314,293
JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) RGD PMID:28502770 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967
JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (PMID:25719671) RGD PMID:25719671 NCBI chr 2:211,530,598...211,546,858
Ensembl chr 2:211,530,602...211,546,821
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in
NOT|involved_in
ISO
IBA
(PMID:25719671), (PMID:26321680)
(MGI:5621227|PMID:25569111)
(MGI:6095345|PMID:28637692)
PMID:21873635
RGD PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692 PMID:21873635 MGI:5621227 MGI:6095345, RGD:13792537 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
G Mfap1a microfibrillar-associated protein 1A involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr 3:108,440,163...108,456,744
Ensembl chr 3:108,438,845...108,456,750
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885
JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:2386947 (MGI:1353882|PMID:10719891)
GO_REF:0000002
GO_REF:0000107
RGD
InterPro
Ensembl
PMID:10719891 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:1353882, RGD:13792537 NCBI chr 6:63,780,105...63,905,950
Ensembl chr 6:63,783,489...63,906,289
JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,572,253...78,613,703
Ensembl chr 1:78,572,279...78,608,021
JBrowse link
G Paxbp1 PAX3 and PAX7 binding protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:30,272,037...30,301,504
Ensembl chr11:30,272,037...30,301,648
JBrowse link
G Phf5a PHD finger protein 5A involved_in ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:12234937), (PMID:27720643), (PMID:29360106)
GO_REF:0000002
PMID:21873635
UniProt
RGD
InterPro
PMID:12234937 PMID:27720643 PMID:29360106 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460
JBrowse link
G Plrg1 pleiotropic regulator 1 involved_in ISO
IBA
ISS
(PMID:28076346)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:28076346 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 5:135,406,177...135,419,511
Ensembl chr 5:135,406,176...135,419,235
JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:28076346), (PMID:33220177) RGD PMID:28076346 PMID:33220177 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO
IBA
ISS
(PMID:20176811)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20176811 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in IBA
ISO
PMID:21873635
(PMID:28781166)
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:11867543)
(PMID:28781166)
RGD PMID:11867543 PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in ISO (PMID:26673105), (PMID:28781166) RGD PMID:26673105 PMID:28781166 NCBI chr 5:123,312,461...123,324,160
Ensembl chr 5:123,311,482...123,323,972
JBrowse link
G Prpf4 pre-mRNA processing factor 4 involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166 PMID:21873635 RGD:13792537 NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919
JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886
JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052
JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:21549338), (PMID:28781166)
GO_REF:0000024
RGD
UniProt
PMID:21549338 PMID:28781166 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:28781166), (PMID:29301961) RGD PMID:28781166 PMID:29301961 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,540,399...1,572,571
Ensembl chr  X:1,540,398...1,572,575
JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014
JBrowse link
G Rbm19 RNA binding motif protein 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:36,365,775...36,451,033
Ensembl chr12:36,365,772...36,450,993
JBrowse link
G Rbm41 RNA binding motif protein 41 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:103,605,732...103,660,381
Ensembl chr  X:103,608,585...103,660,381
JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,047,934...202,058,025
Ensembl chr 1:202,047,927...202,058,020
JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
JBrowse link
G Rbm6 RNA binding motif protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:108,452,687...108,552,783
Ensembl chr 8:108,452,687...108,552,771
JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISS
ISO
GO_REF:0000024
(PMID:29301961)
UniProt
RGD
PMID:29301961 GO_REF:0000024 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
JBrowse link
G Rbmx2 RNA binding motif protein, X-linked 2 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:29360106)
UniProt
RGD
PMID:29360106 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:127,888,514...127,896,239
Ensembl chr  X:127,888,438...127,896,869
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G RGD1305178 similar to Hypothetical protein MGC11690 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,264,263...14,272,580
Ensembl chr 3:14,264,083...14,272,764
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G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473
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G Rnf113a1 ring finger protein 113A1 involved_in ISO (PMID:29360106) RGD PMID:29360106 NCBI chr  X:116,428,037...116,429,164
Ensembl chr  X:116,427,684...116,433,762
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G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:201,432,769...201,457,015
Ensembl chr 2:201,432,684...201,456,747
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858
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G Rsrc1 arginine and serine rich coiled-coil 1 involved_in ISO
ISS
(PMID:15798186)
GO_REF:0000024
RGD
UniProt
PMID:15798186 GO_REF:0000024 NCBI chr 2:151,226,821...151,632,771
Ensembl chr 2:151,231,156...151,632,765
JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO
IBA
(PMID:15314151)
PMID:21873635
RGD PMID:15314151 PMID:21873635 RGD:13792537 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Sf1 splicing factor 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 involved_in ISO (PMID:10882114), (PMID:29360106) RGD PMID:10882114 PMID:29360106 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 involved_in ISO
ISS
(PMID:29360106)
GO_REF:0000024
RGD
UniProt
PMID:29360106 GO_REF:0000024 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in IBA
ISO
PMID:21873635
(PMID:29360106)
RGD PMID:29360106 PMID:21873635 RGD:13792537 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within
involved_in
ISO (MGI:5605165|PMID:23211737)
(PMID:27720643), (PMID:28781166), (PMID:29360106)
(PMID:11252167)
RGD PMID:11252167 PMID:23211737 PMID:27720643 PMID:28781166 PMID:29360106 MGI:5605165 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
JBrowse link