Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
go back to main search page
Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


show annotations for term's descendants           Sort by:
 
RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07061825.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:147,929,863...147,931,068 JBrowse link
G Adad1 adenosine deaminase domain containing 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635, PMID:21873635 GO_REF:0000002, RGD:13792537, RGD:13792537 NCBI chr 2:123,790,798...123,848,598
Ensembl chr 2:123,790,915...123,848,179
JBrowse link
G Adad2 adenosine deaminase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:52,258,908...52,263,031
Ensembl chr19:52,258,947...52,262,959
JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IEA
ISO
IBA
ISS
GO_REF:0000002
GO_REF:0000107
(PMID:9149227)
(PMID:32220291)
PMID:21873635
PMID:14759252
InterPro
Ensembl
RGD
PMID:9149227 PMID:32220291, PMID:21873635, PMID:14759252, PMID:21873635, PMID:14759252 GO_REF:0000002 GO_REF:0000107, RGD:13792537, RGD:8553748, RGD:13792537, RGD:8553748 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635, PMID:21873635 GO_REF:0000002, RGD:13792537, RGD:13792537 NCBI chr17:58,098,979...58,653,137
Ensembl chr17:58,104,559...58,301,260
JBrowse link
G Ccnl1 cyclin L1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:157,747,295...157,759,838
Ensembl chr 2:157,747,542...157,759,838
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:19,068,783...19,081,837
Ensembl chr16:19,068,783...19,081,837
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:18,349,226...18,351,540
Ensembl chr 6:18,349,167...18,351,536
JBrowse link
G Ddx54 DEAD-box helicase 54 involved_in ISO (PMID:12466272) RGD PMID:12466272 NCBI chr12:41,469,642...41,484,887
Ensembl chr12:41,470,557...41,485,122
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:2679763|PMID:14528307), (MGI:3775688|PMID:17804764) RGD PMID:14528307 PMID:17804764 MGI:2679763 MGI:3775688 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Drosha drosha ribonuclease III involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO
ISS
(PMID:17035636)
GO_REF:0000024
RGD
UniProt
PMID:17035636 GO_REF:0000024 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Exosc1 exosome component 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:261,169,798...261,179,865
Ensembl chr 1:261,170,229...261,179,790
JBrowse link
G Exosc9 exosome component 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26370583)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26370583 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:70,448,386...70,471,420
Ensembl chr 9:70,450,444...70,470,550
JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:21,039,990...21,056,413
Ensembl chr14:21,039,990...21,056,452
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 TAS RGD PMID:7512260 RGD:1302261 NCBI chr10:35,872,619...35,879,911
Ensembl chr10:35,870,232...35,879,910
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:82,512,745...82,548,446
Ensembl chr 1:82,512,745...82,546,937
JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:65,611,570...65,632,706
Ensembl chr 8:65,611,570...65,632,706
JBrowse link
G LOC100359916 heterogeneous nuclear ribonucleoprotein K-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:59,911,439...59,913,324
Ensembl chr 5:59,911,431...59,913,348
JBrowse link
G LOC100909712 cyclin-L1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:157,759,898...157,763,422
Ensembl chr 2:157,747,542...157,759,838
JBrowse link
G LOC680385 similar to Sjogren syndrome antigen B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:147,929,498...147,931,250 JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:169,213,076...169,233,173
Ensembl chr 5:169,213,115...169,230,141
JBrowse link
G Rnasel ribonuclease L involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO (PMID:21636784) RGD PMID:21636784 NCBI chr 5:48,561,325...48,779,214
Ensembl chr 5:48,561,339...48,779,207
JBrowse link
G Rtca RNA 3'-terminal phosphate cyclase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:219,537,213...219,558,489
Ensembl chr 2:219,537,206...219,558,675
JBrowse link
G Sfswap splicing factor SWAP involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:30,740,563...30,811,015
Ensembl chr12:30,740,520...30,811,054
JBrowse link
G Ssb small RNA binding exonuclease protection factor La involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
G Trmt2a tRNA methyltransferase 2 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:86,885,671...86,890,482
Ensembl chr11:86,885,626...86,890,390
JBrowse link
G U2surp U2 snRNP-associated SURP domain containing involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:103,242,095...103,299,082
Ensembl chr 8:103,246,558...103,298,927
JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:170,772,166...170,785,613
Ensembl chr 4:170,772,163...170,810,080
Ensembl chr 4:170,772,163...170,810,080
JBrowse link
G Wbp11l1 WW domain-binding protein 11-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:170,154,257...170,167,724
Ensembl chr 4:170,154,227...170,186,942
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 acts_upstream_of_or_within ISO (MGI:5317038|PMID:21266480) RGD PMID:21266480 MGI:5317038 NCBI chr15:24,021,674...24,056,073
Ensembl chr15:24,021,674...24,056,073
JBrowse link
7-methylguanosine cap hypermethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in ISO
IBA
(PMID:16687569)
PMID:21873635
RGD PMID:16687569, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:16,413,356...16,446,881
Ensembl chr 5:16,413,356...16,446,881
JBrowse link
7-methylguanosine mRNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmtr1 cap methyltransferase 1 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:20713356), (PMID:21310715)
GO_REF:0000104
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20713356 PMID:21310715, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr20:8,324,968...8,385,174
Ensembl chr20:8,312,792...8,368,764
JBrowse link
G Cmtr2 cap methyltransferase 2 involved_in ISO
IBA
(PMID:21310715)
PMID:21873635
RGD PMID:21310715, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:41,426,536...41,433,367
Ensembl chr19:41,427,504...41,433,346
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
ISS
(PMID:12434151)
GO_REF:0000024
RGD
UniProt
PMID:12434151 GO_REF:0000024 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit involved_in ISO (PMID:22099306) RGD PMID:22099306 NCBI chr 1:143,583,675...143,589,563
Ensembl chr 1:143,583,675...143,589,556
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase involved_in ISO
IBA
(PMID:9473487)
PMID:21873635
RGD PMID:9473487, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:48,561,325...48,779,214
Ensembl chr 5:48,561,339...48,779,207
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:27422871), (PMID:9790902)
PMID:21873635
UniProt
RGD
PMID:9790902 PMID:27422871, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr18:64,084,746...64,108,246
Ensembl chr18:64,084,795...64,108,246
JBrowse link
7-methylguanosine RNA capping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgs1 trimethylguanosine synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:16,413,356...16,446,881
Ensembl chr 5:16,413,356...16,446,881
JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07056845.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 7:43,601,513...43,602,285 JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO (MGI:3699439|PMID:17261272) RGD PMID:17261272 MGI:3699439 NCBI chr17:49,833,194...49,922,932
Ensembl chr17:49,833,400...49,921,550
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 involved_in ISO (PMID:19720736) RGD PMID:19720736 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO
IBA
(PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)
PMID:21873635
RGD PMID:24275493 PMID:24910439, PMID:21873635, PMID:21873635 MGI:5883203, RGD:13792537, RGD:13792537 NCBI chr 7:120,761,843...120,765,012
Ensembl chr 7:120,761,826...120,780,641
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)
RGD PMID:24275493 PMID:24910439 MGI:5883203 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) RGD PMID:28221134 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO MGI:1924661 (MGI:5699497|PMID:26371508) RGD PMID:26371508 MGI:5699497 NCBI chr 5:24,576,988...24,631,758
Ensembl chr 5:24,576,991...24,631,698
JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
MGI:1917326 (MGI:5699497|PMID:26371508)
Ensembl
RGD
PMID:26371508 GO_REF:0000107 MGI:5699497 NCBI chr19:38,113,412...38,120,578
Ensembl chr19:38,113,412...38,120,578
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (MGI:3575934|PMID:15798186) RGD PMID:15798186 MGI:3575934 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO
IEA
IBA
(PMID:19874820)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:19874820, PMID:21873635, PMID:21873635 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr 7:18,516,253...18,554,536
Ensembl chr 7:18,516,512...18,554,227
JBrowse link
G Insr insulin receptor IEP RGD PMID:23633480 RGD:9685423 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Kdm1a lysine demethylase 1A IEP RGD PMID:20164337 RGD:9588288 NCBI chr 5:154,909,003...154,965,171
Ensembl chr 5:154,909,003...154,965,171
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:3821939|PMID:19075228), (MGI:5009479|PMID:19720736) RGD PMID:19075228 PMID:19720736 MGI:3821939 MGI:5009479 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5477858|PMID:23512658)
GO_REF:0000024
(PMID:23512658)
Ensembl
RGD
UniProt
PMID:23512658 GO_REF:0000024 GO_REF:0000107 MGI:5477858 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:117,129,237...117,140,234
Ensembl chr 7:117,129,237...117,140,214
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 acts_upstream_of_or_within ISO MGI:6442563 (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:118,157,093...118,396,733
Ensembl chr 7:118,156,946...118,396,728
JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO
IBA
(PMID:17589525)
PMID:21873635
RGD PMID:17589525, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:70,586,345...70,603,289
Ensembl chr17:70,586,394...70,603,267
JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3575934|PMID:15798186)
PMID:21873635
RGD PMID:15798186, PMID:21873635, PMID:21873635 MGI:3575934, RGD:13792537, RGD:13792537 NCBI chr 2:164,126,898...164,533,652 JBrowse link
G Scnm1 sodium channel modifier 1 involved_in ISO (MGI:3770352|PMID:17656373) RGD PMID:17656373 MGI:3770352 NCBI chr 2:196,300,239...196,304,419
Ensembl chr 2:196,300,239...196,304,169
JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO
IBA
(PMID:19874820)
PMID:21873635
RGD PMID:19874820, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:84585|PMID:8940107)
Ensembl
RGD
PMID:8940107 GO_REF:0000107 MGI:84585 NCBI chr12:30,740,563...30,811,015
Ensembl chr12:30,740,520...30,811,054
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250, PMID:15181151, PMID:15181151 RGD:1304333, RGD:1304333 NCBI chr10:29,029,556...29,044,919
Ensembl chr10:29,029,590...29,044,583
JBrowse link
G Smptb polypyrimidine tract-binding protein IDA RGD PMID:12578833 RGD:1299129 NCBI chr  X:17,484,839...17,486,721
Ensembl chr  X:17,484,839...17,486,721
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO
IBA
IMP
(PMID:8940107)
PMID:21873635
RGD PMID:8940107, PMID:21873635, PMID:23462647 RGD:13792537, RGD:11038736 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO
ISS
IBA
(PMID:22767602)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:22767602, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:47,039,714...47,046,022
Ensembl chr12:47,039,716...47,046,022
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 4:171,730,629...171,744,877
Ensembl chr 4:171,730,635...171,745,377
JBrowse link
box C/D RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbl fibrillarin involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:85,103,519...85,112,619
Ensembl chr 1:85,103,519...85,112,619
JBrowse link
G Fbll1 fibrillarin-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:20,620,957...20,622,600
Ensembl chr10:20,620,957...20,622,600
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:6400674|PMID:32017896)
GO_REF:0000107
(PMID:32017898)
UniProt
RGD
Ensembl
PMID:32017896 PMID:32017898 GO_REF:0000024 GO_REF:0000107 MGI:6400674 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
box H/ACA RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:22442037) RGD PMID:22442037 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:117,514,529...117,538,342
Ensembl chr 7:117,514,533...117,538,342
JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:169,213,076...169,233,173
Ensembl chr 5:169,213,115...169,230,141
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
cleavage involved in rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:16,618,853...16,627,128
Ensembl chr 9:16,619,040...16,625,609
JBrowse link
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:18325616) RGD PMID:18325616 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtfmt mitochondrial methionyl-tRNA formyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:70,952,209...70,986,393
Ensembl chr 8:70,952,203...70,986,408
JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 7:91,384,329...91,389,605
Ensembl chr 7:91,384,187...91,389,598
JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Kri1 KRI1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:22,301,025...22,317,049
Ensembl chr 8:22,301,498...22,315,339
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:9,430,710...9,432,343
Ensembl chr 5:9,430,728...9,432,343
JBrowse link
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:150,433,567...150,471,783
Ensembl chr 4:150,433,570...150,471,834
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:61,746,070...61,757,518
Ensembl chr10:61,746,059...61,757,518
JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:25219674)
UniProt
RGD
PMID:25219674 GO_REF:0000024 NCBI chr  X:155,844,914...155,862,363
Ensembl chr  X:155,844,857...155,862,475
JBrowse link
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:112,519,789...112,524,281
Ensembl chr 3:112,519,808...112,525,575
JBrowse link
G Rpusd1 RNA pseudouridine synthase domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:15,099,104...15,102,968
Ensembl chr10:15,099,009...15,102,960
JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:110,835,654...110,840,903
Ensembl chr 3:110,835,683...110,840,068
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:145,361,937...145,370,992
Ensembl chr 4:145,366,765...145,370,992
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:36,467,706...36,477,190
Ensembl chr 8:36,467,706...36,477,189
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in ISO (PMID:27084949) RGD PMID:27084949 NCBI chr10:14,598,014...14,600,576
Ensembl chr10:14,598,014...14,600,576
JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Exosc10 exosome component 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07024964.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr16:22,851,465...22,853,022 JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr12:2,158,391...2,170,397
Ensembl chr12:2,158,389...2,170,504
JBrowse link
G Yju2 YJU2 splicing factor homolog involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:11,098,914...11,108,806
Ensembl chr 9:11,098,924...11,108,741
JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:119,721,659...119,742,349
Ensembl chr 4:119,721,660...119,742,349
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07052587.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:64,190,973...64,191,878 JBrowse link
G AABR07064102.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:64,649,194...64,649,586 JBrowse link
G AABR07064998.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:103,807,218...103,807,838 JBrowse link
G AABR07065012.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:103,948,796...103,949,275 JBrowse link
G AABR07065013.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:103,958,380...103,958,859 JBrowse link
G C1d C1D nuclear receptor corepressor involved_in ISO
IBA
(PMID:17412707)
PMID:21873635
RGD PMID:17412707, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:100,415,645...100,427,878
Ensembl chr14:100,415,668...100,427,260
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17412707), (PMID:20368444) RGD PMID:17412707 PMID:20368444 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:20368444) RGD PMID:20368444 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:65,081,591...65,102,344
Ensembl chr  X:65,081,591...65,102,380
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:64,729,254...64,737,807
Ensembl chr16:64,729,221...64,737,807
JBrowse link
G Mphosph6 M phase phosphoprotein 6 involved_in ISO
IBA
(PMID:17412707)
PMID:21873635
RGD PMID:17412707, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:50,357,314...50,367,137
Ensembl chr19:50,357,338...50,367,187
JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA
(PMID:17412707)
PMID:21873635
RGD PMID:17412707, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:44,726,716...44,787,013
Ensembl chr 2:44,717,781...44,786,963
JBrowse link
G Nol9 nucleolar protein 9 involved_in ISO (PMID:21063389) RGD PMID:21063389 NCBI chr 5:169,213,076...169,233,173
Ensembl chr 5:169,213,115...169,230,141
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:27,942,546...27,949,089
Ensembl chr 2:27,942,546...27,949,089
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:89,293,547...89,510,948
Ensembl chr11:89,293,696...89,510,871
JBrowse link
G Rpf1 ribosome production factor 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:252,368,316...252,382,838
Ensembl chr 2:252,368,329...252,382,955
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:105,155,824...105,178,907
Ensembl chr13:105,155,441...105,179,095
JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 involved_in ISO
ISS
(PMID:16738141)
GO_REF:0000024
RGD
UniProt
PMID:16738141 GO_REF:0000024 NCBI chr14:84,211,600...84,227,980
Ensembl chr14:84,211,600...84,227,978
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:30,916,740...30,977,423
Ensembl chr11:30,916,730...30,977,483
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISO
IBA
ISS
(PMID:16043514)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16043514, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 9:66,851,499...66,878,534
Ensembl chr 9:66,851,940...66,877,972
JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:220,762,496...220,771,158
Ensembl chr 1:220,762,349...220,771,181
JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007121.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 1:282,063,929...282,064,741 JBrowse link
G AABR07018167.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr15:44,672,965...44,673,765 JBrowse link
G AABR07027819.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr17:45,286,135...45,286,923 JBrowse link
G AABR07029262.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr10:18,636,485...18,637,285 JBrowse link
G AABR07030630.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr10:96,661,696...96,662,166 JBrowse link
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:152,781,188...152,781,574 JBrowse link
G AABR07045321.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr20:42,842,233...42,843,033 JBrowse link
G AABR07049918.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 5:144,927,759...144,928,559 JBrowse link
G AABR07052519.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:59,165,353...59,166,356 JBrowse link
G AABR07052587.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:64,190,973...64,191,878 JBrowse link
G AABR07054456.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:154,437,571...154,438,322 JBrowse link
G AABR07057586.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 7:79,138,925...79,139,725 JBrowse link
G AC094246.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 1:255,710,658...255,711,417 JBrowse link
G AC128901.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 4:147,121,260...147,122,060 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Las1l LAS1-like, ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:65,081,591...65,102,344
Ensembl chr  X:65,081,591...65,102,380
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:281,863,115...281,864,546
Ensembl chr 1:281,863,918...281,864,304
Ensembl chr 7:281,863,918...281,864,304
JBrowse link
G LOC100359687 mitochondrial ribosomal protein L1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:56,411,909...56,502,073
Ensembl chr 8:56,411,911...56,502,069
JBrowse link
G LOC102547076 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:18,636,358...18,637,285 JBrowse link
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G LOC103690888 60S ribosomal protein L10a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:112,555,128...112,555,864
Ensembl chr  X:112,555,173...112,555,826
JBrowse link
G LOC108348298 ribosomal L1 domain-containing protein 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:4,487,809...4,499,727
Ensembl chr10:4,487,882...4,499,230
JBrowse link
G LOC108349080 60S ribosomal protein L7a pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:42,842,233...42,843,033 JBrowse link
G LOC108349606 60S ribosomal protein L7a-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:166,282,044...166,282,845
Ensembl chr18:4,371,051...4,371,899
JBrowse link
G LOC680700 similar to ribosomal protein L10a involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:139,933,423...139,933,794
Ensembl chr 5:139,932,988...139,933,764
JBrowse link
G Mak16 MAK16 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:64,729,254...64,737,807
Ensembl chr16:64,729,221...64,737,807
JBrowse link
G Mrpl1 mitochondrial ribosomal protein L1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:14,951,507...15,008,136
Ensembl chr14:14,951,495...15,008,150
JBrowse link
G Nhp2 NHP2 ribonucleoprotein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nop2 NOP2 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Nsa2 NSA2 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:27,942,546...27,949,089
Ensembl chr 2:27,942,546...27,949,089
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:152,781,177...152,781,621 JBrowse link
G Rpf1 ribosome production factor 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:252,368,316...252,382,838
Ensembl chr 2:252,368,329...252,382,955
JBrowse link
G Rpl10a ribosomal protein L10A involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:7,908,309...7,910,867
Ensembl chr20:7,908,304...7,910,867
JBrowse link
G Rpl7a ribosomal protein L7a involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:5,458,985...5,461,627
Ensembl chr 3:5,459,160...5,461,583
Ensembl chr 3:5,459,160...5,461,583
JBrowse link
G Rrp15 ribosomal RNA processing 15 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:105,155,824...105,178,907
Ensembl chr13:105,155,441...105,179,095
JBrowse link
G Rsl1d1 ribosomal L1 domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:4,375,329...4,387,195
Ensembl chr10:4,356,915...4,390,030
JBrowse link
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:4,447,239...4,459,125
Ensembl chr10:4,487,882...4,499,230
Ensembl chr10:4,487,882...4,499,230
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:123,282,754...123,287,721
Ensembl chr 7:123,282,754...123,287,721
JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07013798.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 2:257,295,193...257,295,534 JBrowse link
G AABR07030263.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr10:78,416,946...78,417,317 JBrowse link
G AABR07031666.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr18:24,312,582...24,312,950 JBrowse link
G AABR07037343.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:18,998,532...18,998,885 JBrowse link
G AABR07063704.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 6:42,947,334...42,947,705 JBrowse link
G AABR07073381.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 8:33,345,014...33,345,379 JBrowse link
G AC103056.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 1:255,801,694...255,802,172 JBrowse link
G AC121415.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 2:178,212,156...178,212,785 JBrowse link
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
ISS
IBA
(PMID:17353269)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:17353269, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 7:117,514,529...117,538,342
Ensembl chr 7:117,514,533...117,538,342
JBrowse link
G Ddx18 DEAD-box helicase 18 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:37,522,558...37,536,066
Ensembl chr13:37,522,561...37,536,066
JBrowse link
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:94,439,059...94,445,503
Ensembl chr10:94,439,077...94,445,503
JBrowse link
G Gtpbp4 GTP binding protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5617283|PMID:25190460)
GO_REF:0000107
RGD
Ensembl
PMID:25190460 GO_REF:0000107 MGI:5617283 NCBI chr17:63,111,086...63,145,618
Ensembl chr17:63,110,254...63,145,577
JBrowse link
G LOC365827 similar to 60S ribosomal protein L7 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:178,212,078...178,213,029 JBrowse link
G LOC367050 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:33,344,951...33,345,463 JBrowse link
G LOC686074 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:24,312,539...24,312,985 JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:34,267,442...34,277,543
Ensembl chr13:34,267,471...34,277,530
JBrowse link
G Pes1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within
involved_in
ISS
ISO
IBA
GO_REF:0000024
(MGI:5617283|PMID:25190460)
(PMID:16738141), (PMID:17353269)
PMID:21873635
UniProt
RGD
PMID:16738141 PMID:17353269 PMID:25190460, PMID:21873635, PMID:21873635 GO_REF:0000024 MGI:5617283, RGD:13792537, RGD:13792537 NCBI chr14:84,211,600...84,227,980
Ensembl chr14:84,211,600...84,227,978
JBrowse link
G RGD1562863 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:18,998,488...18,999,101 JBrowse link
G RGD1563157 similar to 60S ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:42,947,334...42,947,705 JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:45,321,381...45,342,865
Ensembl chr20:45,321,405...45,342,948
JBrowse link
G Rpl35 ribosomal protein L35 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:23,294,813...23,297,774
Ensembl chr 3:23,294,814...23,297,774
JBrowse link
G Rpl7 ribosomal protein L7 involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635, PMID:21873635 GO_REF:0000002, RGD:13792537, RGD:13792537 NCBI chr 5:2,633,517...2,636,525
Ensembl chr 5:2,632,712...2,640,021
JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:16,508,477...16,516,502
Ensembl chr 9:16,508,799...16,513,120
JBrowse link
G Urb1 URB1 ribosome biogenesis homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:30,916,740...30,977,423
Ensembl chr11:30,916,730...30,977,483
JBrowse link
G Wdr12 WD repeat domain 12 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:16043514), (PMID:17353269)
UniProt
RGD
PMID:16043514 PMID:17353269, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 9:66,851,499...66,878,534
Ensembl chr 9:66,851,940...66,877,972
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:72,227,710...72,235,932
Ensembl chr10:72,228,222...72,235,888
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:251,453,503...251,484,760
Ensembl chr 2:251,453,644...251,484,759
JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:152,781,188...152,781,574 JBrowse link
G Ddx52 DExD-box helicase 52 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:71,253,667...71,276,397
Ensembl chr10:71,253,598...71,277,277
JBrowse link
G LOC100359503 ribosomal protein S28-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:70,644,459...70,644,750
Ensembl chr16:70,644,474...70,644,683
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:281,863,115...281,864,546
Ensembl chr 1:281,863,918...281,864,304
Ensembl chr 7:281,863,918...281,864,304
JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:47,380,376...47,382,933
Ensembl chr13:47,380,406...47,382,955
Ensembl chr19:47,380,406...47,382,955
JBrowse link
G LOC108353424 40S ribosomal protein S28 pseudogene involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO
IBA
(PMID:22916032)
PMID:21873635
RGD PMID:22916032, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:95,388,223...95,408,053
Ensembl chr10:95,388,888...95,407,997
JBrowse link
G Nop14 NOP14 nucleolar protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:81,340,141...81,361,277
Ensembl chr14:81,340,041...81,362,441
JBrowse link
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:152,781,177...152,781,621 JBrowse link
G Riok1 RIO kinase 1 involved_in ISO
IBA
(PMID:22072790)
PMID:21873635
RGD PMID:22072790, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:27,429,421...27,452,353
Ensembl chr17:27,429,416...27,452,314
JBrowse link
G Riok2 RIO kinase 2 involved_in ISO
IBA
(PMID:19564402)
PMID:21873635
RGD PMID:19564402, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:59,130,008...59,146,457
Ensembl chr 1:59,129,951...59,146,776
JBrowse link
G Riok3 RIO kinase 3 involved_in ISO
IBA
(PMID:22418843)
PMID:21873635
RGD PMID:22418843, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:3,565,166...3,590,739
Ensembl chr18:3,565,166...3,590,739
JBrowse link
G Rps14 ribosomal protein S14 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:56,042,532...56,047,316
Ensembl chr18:56,044,369...56,047,316
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:81,750,873...81,756,629
Ensembl chr 1:81,750,928...81,756,627
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:18,682,071...18,683,440
Ensembl chr 7:18,682,071...18,683,440
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:123,282,754...123,287,721
Ensembl chr 7:123,282,754...123,287,721
JBrowse link
G Srfbp1 serum response factor binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:47,456,406...47,478,967
Ensembl chr18:47,456,327...47,480,587
JBrowse link
G Tsr3 TSR3 ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:14,598,014...14,600,576
Ensembl chr10:14,598,014...14,600,576
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr19:39,087,995...39,116,124
Ensembl chr19:39,087,990...39,116,125
JBrowse link
G Wdr3 WD repeat domain 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:202,447,749...202,470,398
Ensembl chr 2:202,447,745...202,470,399
JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 1:183,629,450...183,630,695 JBrowse link
G AABR07019341.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr15:100,303,346...100,303,807 JBrowse link
G AABR07021945.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr13:99,981,052...99,982,358 JBrowse link
G AABR07051796.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:21,983,841...21,984,332 JBrowse link
G AABR07053635.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 3:117,853,999...117,854,481 JBrowse link
G AABR07056611.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 7:32,193,086...32,193,418 JBrowse link
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:150,433,567...150,471,783
Ensembl chr 4:150,433,570...150,471,834
JBrowse link
G Bysl bystin-like acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:78,005,232...78,040,220
Ensembl chr 7:78,005,232...78,040,214
JBrowse link
G Dhx37 DEAH-box helicase 37 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr12:36,594,058...36,614,165
Ensembl chr12:36,594,047...36,614,210
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Fam207a family with sequence similarity 207, member A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:11,863,145...11,896,833
Ensembl chr20:11,863,082...11,896,774
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (MGI:5496981|PMID:23562818) RGD PMID:23562818 MGI:5496981 NCBI chr 1:46,978,345...46,985,032
Ensembl chr 1:46,978,458...46,985,032
JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:66,446,135...66,488,303
Ensembl chr17:66,446,162...66,619,250
JBrowse link
G Helb DNA helicase B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:64,860,641...64,888,146
Ensembl chr 7:64,860,666...64,887,448
JBrowse link
G LOC100363452 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:103,192,670...103,193,343
Ensembl chr 3:103,192,683...103,193,333
JBrowse link
G LOC100911847 40S ribosomal protein S14-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:144,083,030...144,083,602
Ensembl chr18:56,044,369...56,047,316
JBrowse link
G LOC102548369 40S ribosomal protein S16-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:100,303,331...100,303,838 JBrowse link
G LOC108348069 HEAT repeat-containing protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:66,578,885...66,619,465
Ensembl chr17:66,446,162...66,619,250
JBrowse link
G LOC297756 ribosomal protein S8-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:2,799,565...2,803,855
Ensembl chr 5:2,799,565...2,803,855
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:140,477,645...140,487,249
Ensembl chr 1:140,477,868...140,487,248
JBrowse link
G NEWGENE_1562416 TSR2, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:20,224,112...20,232,647
Ensembl chr  X:20,144,432...20,232,639
JBrowse link
G Ngdn neuroguidin involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr15:33,677,333...33,684,840
Ensembl chr15:33,677,597...33,684,840
JBrowse link
G Nol10 nucleolar protein 10 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:42,656,661...42,745,099
Ensembl chr 6:42,656,616...42,745,098
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:11,228,892...11,243,204
Ensembl chr20:11,228,844...11,243,205
JBrowse link
G RGD1561137 similar to 40S ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:21,983,880...21,984,383 JBrowse link
G RGD1566369 similar to ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:88,139,926...88,156,732
Ensembl chr17:88,139,962...88,140,588
JBrowse link
G Rps14 ribosomal protein S14 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:56,042,532...56,047,316
Ensembl chr18:56,044,369...56,047,316
JBrowse link
G Rps16 ribosomal protein S16 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:85,405,499...85,408,444
Ensembl chr 1:85,405,512...85,408,444
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) RGD PMID:16990592 PMID:17053056 NCBI chr 1:81,750,873...81,756,629
Ensembl chr 1:81,750,928...81,756,627
JBrowse link
G Rps8 ribosomal protein S8 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:136,020,941...136,023,511
Ensembl chr 5:136,020,941...136,023,511
JBrowse link
G Rrp36 ribosomal RNA processing 36 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 9:16,618,853...16,627,128
Ensembl chr 9:16,619,040...16,625,609
JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:61,746,070...61,757,518
Ensembl chr10:61,746,059...61,757,518
JBrowse link
G Tsr2 TSR2, ribosome maturation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:20,141,406...20,146,082
Ensembl chr  X:20,144,432...20,232,639
JBrowse link
G Utp25 UTP25, small subunit processor component involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:111,828,052...111,849,654
Ensembl chr13:111,828,043...111,849,653
JBrowse link
G Utp3 UTP3, small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:21,153,998...21,155,652
Ensembl chr14:21,154,000...21,155,652
JBrowse link
G Utp4 UTP4 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:39,087,995...39,116,124
Ensembl chr19:39,087,990...39,116,125
JBrowse link
G Utp6 UTP6 small subunit processome component involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:67,255,177...67,285,754
Ensembl chr10:67,257,161...67,285,617
JBrowse link
G Wdr46 WD repeat domain 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:5,447,860...5,455,632
Ensembl chr20:5,447,860...5,455,632
JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISO
ISS
(PMID:28335001)
GO_REF:0000024
RGD
UniProt
PMID:28335001 GO_REF:0000024 NCBI chr14:86,876,800...86,885,603
Ensembl chr14:86,877,627...86,885,584
JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA
(PMID:18083837)
PMID:21873635
RGD PMID:18083837, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:19864255)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19864255, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
mitochondrial RNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
(PMID:21593607)
GO_REF:0000024
RGD
UniProt
PMID:21593607 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
mitochondrial RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd5 FAST kinase domains 5 involved_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:123,154,263...123,170,615 JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:29040705)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO (PMID:11504732) RGD PMID:11504732 NCBI chr 4:138,855,497...138,869,217
Ensembl chr 4:138,855,641...138,869,217
JBrowse link
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in IEA
ISS
ISO
IBA
GO_REF:0000107
GO_REF:0000024
(PMID:21593607)
PMID:21873635
Ensembl
UniProt
RGD
PMID:21593607, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr10:51,478,378...51,501,167
Ensembl chr10:51,478,378...51,501,165
JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705)
Ensembl
UniProt
RGD
PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISO
ISS
IBA
(PMID:25953853)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:25953853, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
(PMID:29040705)
GO_REF:0000024
RGD
UniProt
PMID:29040705 GO_REF:0000024 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:25925575), (PMID:28888424)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO
IBA
(PMID:26189817)
PMID:21873635
RGD PMID:26189817, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:96,164,579...96,171,680
Ensembl chr 6:96,153,014...96,171,779
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (MGI:5635958|PMID:25738458) RGD PMID:25738458 MGI:5635958 NCBI chr 3:149,835,953...149,870,429
Ensembl chr 3:149,703,848...149,870,413
JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10a tRNA methyltransferase 10A involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:243,422,811...243,437,533
Ensembl chr 2:243,422,811...243,438,050
JBrowse link
G Trmt10b tRNA methyltransferase 10B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:60,841,517...60,866,480
Ensembl chr 5:60,850,852...60,865,207
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
IBA
(PMID:27132592)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:27132592, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr11:47,047,342...47,052,420
Ensembl chr11:47,047,342...47,052,418
JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in IEA
ISO
GO_REF:0000107
(PMID:28082677)
Ensembl
RGD
PMID:28082677 GO_REF:0000107 NCBI chr 8:36,467,706...36,477,190
Ensembl chr 8:36,467,706...36,477,189
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within
involved_in
ISO
IBA
SGD:S000003205 (MGI:2677576|PMID:14522080)
PMID:21873635
RGD PMID:14522080, PMID:21873635, PMID:21873635 MGI:2677576, RGD:13792537, RGD:13792537 NCBI chr 8:85,807,703...85,832,263
Ensembl chr 8:85,808,125...85,831,937
JBrowse link
mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:16,450,160...16,497,913
Ensembl chr18:16,453,369...16,497,886
JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:154,507,029...154,553,312
Ensembl chr 3:154,507,035...154,553,312
JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:197,882,666...197,937,844
Ensembl chr 2:197,886,160...197,935,567
JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 acts_upstream_of_or_within ISO (MGI:3619747|PMID:16115198) RGD PMID:16115198 MGI:3619747 NCBI chr 7:116,787,762...116,872,536
Ensembl chr 7:116,787,766...116,872,511
JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in ISO
IBA
(PMID:18688255)
PMID:21873635
RGD PMID:18688255, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:125,870,372...125,898,039
Ensembl chr 6:125,870,372...125,898,874
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IBA
(PMID:18688255)
(MGI:4418605|PMID:18955505)
PMID:21873635
RGD PMID:18688255 PMID:18955505, PMID:21873635, PMID:21873635 MGI:4418605, RGD:13792537, RGD:13792537 NCBI chr 6:43,363,792...43,391,712
Ensembl chr 6:43,363,792...43,391,712
JBrowse link
G LOC100363294 stem-loop binding protein-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:27,550,426...27,557,699
Ensembl chr18:27,554,062...27,557,699
JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IBA
(MGI:2676509|PMID:12975319)
PMID:21873635
RGD PMID:12975319, PMID:21873635, PMID:21873635 MGI:2676509, RGD:13792537, RGD:13792537 NCBI chr10:31,023,561...31,041,700
Ensembl chr10:31,028,697...31,041,626
JBrowse link
G Slbp stem-loop binding protein involved_in ISO
IBA
(MGI:4353869|PMID:19470752)
PMID:21873635
RGD PMID:19470752, PMID:21873635, PMID:21873635 MGI:4353869, RGD:13792537, RGD:13792537 NCBI chr14:82,356,916...82,366,368
Ensembl chr14:82,356,916...82,366,368
JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:100,736,319...100,755,498
Ensembl chr 1:100,736,243...100,746,021
JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:119,721,659...119,742,349
Ensembl chr 4:119,721,660...119,742,349
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250, PMID:15181151, PMID:15181151 RGD:1304333, RGD:1304333 NCBI chr10:29,029,556...29,044,919
Ensembl chr10:29,029,590...29,044,583
JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:86,785,793...86,810,806
Ensembl chr 6:86,785,771...86,810,316
JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 involved_in ISO
IEA
ISS
(PMID:9885563)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:101,555,691...101,588,659
Ensembl chr 5:101,555,694...101,588,598
JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within
involved_in
IEA
ISO
IBA
GO_REF:0000107
(MGI:84585|PMID:8940107)
PMID:21873635
Ensembl
RGD
PMID:8940107, PMID:21873635, PMID:21873635 GO_REF:0000107 MGI:84585, RGD:13792537, RGD:13792537 NCBI chr12:30,740,563...30,811,015
Ensembl chr12:30,740,520...30,811,054
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:7,409,401...7,427,581
Ensembl chr20:7,409,401...7,427,581
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:48,456,777...48,484,017
Ensembl chr 5:48,456,757...48,485,912
JBrowse link
mRNA alternative polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:20695905), (PMID:23187700), (PMID:29276085) RGD PMID:20695905 PMID:23187700 PMID:29276085 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:29276085)
UniProt
RGD
PMID:29276085 GO_REF:0000024 NCBI chr 1:226,572,399...226,596,185
Ensembl chr 1:226,573,105...226,596,131
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO
GO_REF:0000024
(PMID:17098938), (PMID:20695905), (PMID:23187700), (PMID:29276085)
UniProt
RGD
PMID:17098938 PMID:20695905 PMID:23187700 PMID:29276085 GO_REF:0000024 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Virma vir like m6A methyltransferase associated involved_in ISO (PMID:29507755) RGD PMID:29507755 NCBI chr 5:25,042,743...25,121,403
Ensembl chr 5:25,042,710...25,120,264
JBrowse link
G Ythdc1 YTH domain containing 1 acts_upstream_of_or_within ISO
IEA
(MGI:6161521|PMID:29799838)
GO_REF:0000107
RGD
Ensembl
PMID:29799838 GO_REF:0000107 MGI:6161521 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008904.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 2:77,783,851...77,784,522 JBrowse link
G AABR07055789.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:10,064,414...10,068,532 JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:11,258,526...11,266,509
Ensembl chr 7:11,261,201...11,266,630
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:12,994,131...13,004,958
Ensembl chr 8:12,994,155...13,004,957
JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:18426921)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18426921 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:36,321,992...36,374,665
Ensembl chr 8:36,321,993...36,374,673
JBrowse link
G LOC310177 similar to RIKEN cDNA 0610040D20 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:77,783,788...77,784,626 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:18426921)
UniProt
RGD
PMID:18426921 GO_REF:0000024 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:38,680,583...38,741,570
Ensembl chr 3:38,682,146...38,741,113
JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:140,958,952...140,981,588
Ensembl chr 7:140,967,282...140,981,583
JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:30,680,454...30,714,542
Ensembl chr17:30,683,640...30,714,495
JBrowse link
G Rbm19 RNA binding motif protein 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,907,978...41,993,969
Ensembl chr12:41,907,740...41,993,957
JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO
ISS
(PMID:22246180)
GO_REF:0000024
RGD
UniProt
PMID:22246180 GO_REF:0000024 NCBI chr18:55,828,158...55,839,421
Ensembl chr18:55,828,158...55,838,966
JBrowse link
G Rbm4b RNA binding motif protein 4B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,009,397...220,019,488
Ensembl chr 1:220,009,397...220,019,486
JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:220,762,496...220,771,158
Ensembl chr 1:220,762,349...220,771,181
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:75,334,200...75,341,197
Ensembl chr10:75,335,146...75,341,197
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:48,456,777...48,484,017
Ensembl chr 5:48,456,757...48,485,912
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,792,779...105,795,986
Ensembl chr10:105,792,779...105,795,958
JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:6,288,285...6,298,218
Ensembl chr20:6,288,267...6,298,213
JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,032,999...150,060,769
Ensembl chr 5:150,032,999...150,060,765
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:104,611,026...104,640,033
Ensembl chr 6:104,611,026...104,615,302
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:2,879,312...2,886,505
Ensembl chr 6:2,880,518...2,886,465
JBrowse link
G Srsf8 serine and arginine rich splicing factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:49,529,525...49,530,166
NCBI chr  X:49,644,973...49,705,870
Ensembl chr  X:49,529,318...49,530,166
JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:47,039,714...47,046,022
Ensembl chr12:47,039,716...47,046,022
JBrowse link
G Wbp11 WW domain binding protein 11 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:170,772,166...170,785,613
Ensembl chr 4:170,772,163...170,810,080
Ensembl chr 4:170,772,163...170,810,080
JBrowse link
G Wbp11l1 WW domain-binding protein 11-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:170,154,257...170,167,724
Ensembl chr 4:170,154,227...170,186,942
JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO
ISS
(PMID:19592703)
GO_REF:0000024
RGD
UniProt
PMID:19592703 GO_REF:0000024 NCBI chr15:61,745,989...61,772,516
Ensembl chr15:61,745,989...61,772,516
JBrowse link
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:21317875) RGD PMID:21317875 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcyl1 adenosylhomocysteinase-like 1 acts_upstream_of_or_within
involved_in
ISO (PMID:19224921)
(MGI:3848108|PMID:19224921)
RGD PMID:19224921 MGI:3848108 NCBI chr 2:210,438,884...210,474,350
Ensembl chr 2:210,438,893...210,473,761
JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (MGI:3610697|PMID:16314516) RGD PMID:16314516 MGI:3610697 NCBI chr 1:88,897,525...88,908,750
Ensembl chr 1:88,897,532...88,908,750
JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within
involved_in
ISS
ISO
GO_REF:0000024
(MGI:3610697|PMID:16314516)
UniProt
RGD
PMID:16314516 GO_REF:0000024 MGI:3610697 NCBI chr11:24,425,013...24,641,872
Ensembl chr11:24,425,005...24,641,858
JBrowse link
G Cdc73 cell division cycle 73 involved_in ISO
ISS
IEA
(PMID:21329879)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:21329879 GO_REF:0000024 GO_REF:0000107 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 involved_in ISO
IBA
(PMID:7590244)
PMID:21873635
RGD PMID:7590244, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:117,661,779...117,672,373
Ensembl chr 7:117,661,661...117,672,373
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:125,870,372...125,898,039
Ensembl chr 6:125,870,372...125,898,874
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:43,363,792...43,391,712
Ensembl chr 6:43,363,792...43,391,712
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:104,882,726...104,909,746
Ensembl chr  X:104,882,704...104,909,739
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:36,150,381...36,208,395
Ensembl chr14:36,150,399...36,208,373
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO
ISS
(PMID:21329879)
GO_REF:0000024
RGD
UniProt
PMID:21329879 GO_REF:0000024 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO
IBA
(PMID:21292163)
PMID:21873635
RGD PMID:21292163, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:56,046,507...56,068,185
Ensembl chr17:56,046,509...56,068,125
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5437387|PMID:22621333) RGD PMID:22621333 MGI:5437387 NCBI chr 3:160,410,733...160,447,073
Ensembl chr 3:160,410,757...160,444,940
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO
ISS
(PMID:21329879)
GO_REF:0000024
RGD
UniProt
PMID:21329879 GO_REF:0000024 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Papola poly (A) polymerase alpha involved_in ISO
IBA
(PMID:19224921), (PMID:7590244)
PMID:21873635
RGD PMID:7590244 PMID:19224921, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:129,609,068...129,662,002
Ensembl chr 6:129,609,074...129,661,531
JBrowse link
G Papolg poly(A) polymerase gamma involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr14:108,624,359...108,658,371
Ensembl chr14:108,624,359...108,658,371
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:157,463,014...157,494,134
Ensembl chr 1:157,468,626...157,494,008
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in ISO
ISS
IBA
(PMID:20861839)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:20861839, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 5:173,152,964...173,182,720
Ensembl chr 5:173,152,964...173,182,719
JBrowse link
G Sympk symplekin involved_in ISO
IBA
(PMID:20861839)
PMID:21873635
RGD PMID:20861839, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:79,931,097...79,959,461
Ensembl chr 1:79,931,156...79,959,461
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:28383716) RGD PMID:28383716 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18288197), (PMID:21102410)
UniProt
RGD
PMID:18288197 PMID:21102410, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 1:225,151,462...225,162,445
Ensembl chr 1:225,151,404...225,162,595
JBrowse link
G Tut4 terminal uridylyl transferase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
G Wdr33 WD repeat domain 33 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr18:24,584,832...24,689,681
Ensembl chr18:24,584,900...24,689,636
JBrowse link
mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:250,426,027...250,514,245
Ensembl chr 1:250,426,158...250,514,866
JBrowse link
G AABR07031533.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr18:18,003,537...18,079,560 JBrowse link
G AABR07035787.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr12:22,466,601...22,470,972 JBrowse link
G AABR07051190.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:260,653...262,124 JBrowse link
G AABR07065078.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 6:107,156,263...107,164,033 JBrowse link
G Adar adenosine deaminase, RNA-specific involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Adarb2 adenosine deaminase, RNA-specific, B2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:58,098,979...58,653,137
Ensembl chr17:58,104,559...58,301,260
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:17594903) RGD PMID:17594903 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO
IBA
ISS
(PMID:23177736)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23177736, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr10:46,906,314...46,927,759
Ensembl chr10:46,906,115...46,930,579
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Apobec4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:70,157,098...70,165,686
Ensembl chr13:70,157,522...70,165,568
JBrowse link
G Arl6ip4 ADP-ribosylation factor like GTPase 6 interacting protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:37,904,376...37,906,521
Ensembl chr12:37,904,379...37,906,521
JBrowse link
G Brdt bromodomain testis associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:3,437,876...3,462,613
Ensembl chr14:3,405,995...3,462,629
JBrowse link
G C1qbp complement C1q binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:57,613,876...57,618,527
Ensembl chr10:57,613,879...57,618,527
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560
JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:86,157,186...86,210,657
Ensembl chr10:86,157,608...86,222,707
JBrowse link
G Cir1 corepressor interacting with RBPJ, CIR1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:59,994,547...60,023,843
Ensembl chr 3:59,994,181...60,023,913
JBrowse link
G Clasrp CLK4-associating serine/arginine rich protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:80,491,520...80,515,761
Ensembl chr 1:80,491,480...80,515,694
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 involved_in ISO (PMID:14690600) RGD PMID:14690600 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Csdc2 cold shock domain containing C2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:123,168,811...123,183,336
Ensembl chr 7:123,168,811...123,183,335
JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:170,380,413...170,392,162
Ensembl chr 3:170,380,719...170,392,160
JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:94,530,586...94,603,378
Ensembl chr 3:94,530,586...94,607,588
JBrowse link
G Ctnnbl1 catenin, beta like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:154,212,245...154,373,170
Ensembl chr 3:154,212,202...154,373,169
JBrowse link
G Da2-19 uncharacterized LOC302729 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:48,196,789...48,213,506
Ensembl chr  X:48,196,916...48,213,505
JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Fam172a family with sequence similarity 172, member A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Fblim1 filamin binding LIM protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:160,122,466...160,158,921
Ensembl chr 5:160,122,425...160,158,386
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Gpatch1 G patch domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:91,529,096...91,578,032
Ensembl chr 1:91,529,112...91,578,048
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
IEA
(PMID:2557628)
GO_REF:0000002
RGD
InterPro
PMID:2557628 GO_REF:0000002 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:62,481,222...62,491,356
Ensembl chr 3:62,481,323...62,487,227
JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:149,957,143...149,978,896
Ensembl chr 4:149,957,206...149,978,895
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:35,872,619...35,879,911
Ensembl chr10:35,870,232...35,879,910
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,994,090...87,006,776
Ensembl chr 1:86,996,093...87,006,776
JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:2,698,983...2,729,715
Ensembl chr 6:2,699,961...2,729,394
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:24,849,508...24,891,339
Ensembl chr18:24,849,545...24,880,317
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:105,781,752...105,787,803
Ensembl chr10:105,781,753...105,787,803
JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:147,927,145...147,953,093
Ensembl chr 5:147,927,152...147,953,093
JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:39,501,431...40,008,707
Ensembl chr 9:39,539,530...40,008,680
JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IDA RGD PMID:11118435 RGD:632715 NCBI chr 7:110,031,819...110,179,475
Ensembl chr 7:110,031,696...110,179,468
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
G Lgals3 galectin 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,153,602...24,165,537
Ensembl chr15:24,141,651...24,165,537
JBrowse link
G LOC100910882 RNA-binding protein 39-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:152,226,011...152,259,236
Ensembl chr 3:151,691,514...151,724,654
Ensembl chr 3:151,691,514...151,724,654
JBrowse link
G LOC108348175 protein quaking-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:50,828,585...50,936,459 JBrowse link
G LOC679894 similar to THO complex subunit 2 (Tho2) involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:6,561,962...6,601,906
Ensembl chr14:6,581,983...6,587,141
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:127,480,465...127,487,617
Ensembl chr 5:127,480,485...127,487,603
JBrowse link
G Mbnl2 muscleblind-like splicing regulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:105,640,097...105,797,933
Ensembl chr15:105,640,097...105,797,932
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (MGI:5527005|PMID:24209618) RGD PMID:24209618 MGI:5527005 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mtpap mitochondrial poly(A) polymerase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:56,046,507...56,068,185
Ensembl chr17:56,046,509...56,068,125
JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:63,098,115...63,131,779
Ensembl chr10:63,098,116...63,133,185
JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISO
ISS
IBA
(PMID:8626397)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8626397, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:2,717,021...2,736,541
Ensembl chr 7:2,718,700...2,736,157
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Pdcd11 programmed cell death 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:266,866,931...266,908,042
Ensembl chr 1:266,866,931...266,908,042
JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Phrf1 PHD and ring finger domains 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:214,215,673...214,248,906
Ensembl chr 1:214,215,992...214,248,901
JBrowse link
G Pnn pinin, desmosome associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:80,159,364...80,167,677
Ensembl chr 6:80,159,364...80,167,677
JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:65,315,407...65,329,145
Ensembl chr 9:65,315,410...65,329,066
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO
IEA
(PMID:17594903)
GO_REF:0000107
RGD
Ensembl
PMID:17594903 GO_REF:0000107 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prmt9 protein arginine methyltransferase 9 involved_in ISO (PMID:25737013) RGD PMID:25737013 NCBI chr19:34,067,008...34,105,626
Ensembl chr19:34,070,632...34,105,610
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
G Prpf38b pre-mRNA processing factor 38B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:211,706,245...211,715,271
Ensembl chr 2:211,706,228...211,715,311
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in IMP
IEA
GO_REF:0000043 UniProt PMID:16177139 GO_REF:0000043, RGD:10045980 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:76,670,074...76,756,196
Ensembl chr 5:76,673,990...76,756,147
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:117,129,237...117,140,234
Ensembl chr 7:117,129,237...117,140,214
JBrowse link
G Qk quaking IMP RGD PMID:21253564 RGD:10045996 NCBI chr 1:50,983,647...51,050,692 JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:192,933,264...192,965,160
Ensembl chr 1:192,933,540...192,965,158
JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:8,312,961...10,437,778
Ensembl chr10:8,312,961...8,654,892
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:118,157,093...118,396,733
Ensembl chr 7:118,156,946...118,396,728
JBrowse link
G Rbfox3 RNA binding fox-1 homolog 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:107,517,916...107,850,764
Ensembl chr10:107,516,995...107,539,658
JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:274,391,932...274,589,816
Ensembl chr 1:274,391,932...274,589,816
JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:10,457,316...10,460,540
Ensembl chr10:10,457,320...10,460,756
JBrowse link
G Rbm26 RNA binding motif protein 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:89,262,683...89,339,323
Ensembl chr15:89,266,710...89,339,323
JBrowse link
G Rbm27 RNA binding motif protein 27 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:36,596,568...36,657,157
Ensembl chr18:36,596,585...36,656,314
JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:151,691,498...151,724,723
Ensembl chr 3:151,691,514...151,724,654
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Rbmxl1b RNA binding motif protein, X-linked-like 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:42,186,612...42,188,294
Ensembl chr 4:42,186,612...42,188,289
JBrowse link
G Rnasel ribonuclease L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Scaf1 SR-related CTD-associated factor 1 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:100,997,724...101,010,855
Ensembl chr 1:100,997,745...101,008,266
JBrowse link
G Scaf4 SR-related CTD-associated factor 4 IMP RGD PMID:8692929 RGD:1299392 NCBI chr11:30,371,713...30,428,073
Ensembl chr11:30,371,713...30,428,073
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 IMP RGD PMID:8692929 RGD:1299392 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr14:84,393,182...84,413,931
Ensembl chr14:84,393,182...84,413,931
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr 7:11,777,826...11,784,373
Ensembl chr 7:11,777,826...11,783,849
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO (PMID:15647371) RGD PMID:15647371 NCBI chr 5:142,702,721...142,722,350
Ensembl chr 5:142,702,685...142,722,341
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
G Smndc1 survival motor neuron domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:274,096,068...274,107,138
Ensembl chr 1:274,096,068...274,107,138
JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:118,478,075...118,487,633
Ensembl chr 4:118,478,075...118,534,280
JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) RGD PMID:21504830 NCBI chr11:31,806,598...31,837,769
Ensembl chr11:31,806,618...31,837,763
JBrowse link
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:33,806,035...33,841,594
Ensembl chr 2:33,809,807...33,841,499
JBrowse link
G Srek1ip1 SREK1-interacting protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:34,923,187...34,940,410 JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:153,675,619...153,708,187
Ensembl chr 5:153,675,624...153,708,170
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in ISO
IBA
(MGI:4414616|PMID:19737518)
PMID:21873635
RGD PMID:19737518, PMID:21873635, PMID:21873635 MGI:4414616, RGD:13792537, RGD:13792537 NCBI chr12:45,726,192...45,884,644
Ensembl chr12:45,727,112...45,882,548
JBrowse link
G Sugp1 SURP and G patch domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:21,100,923...21,131,795
Ensembl chr16:21,100,924...21,131,795
JBrowse link
G Sugp2 SURP and G patch domain containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:20,908,162...20,939,574
Ensembl chr16:20,910,177...20,939,545
JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:75,032,365...75,038,547
Ensembl chr10:75,032,365...75,038,547
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:96,100,692...96,266,342
Ensembl chr 8:96,105,025...96,266,342
JBrowse link
G Tardbp TAR DNA binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Tcerg1 transcription elongation regulator 1 involved_in ISO (PMID:20215116) RGD PMID:20215116 NCBI chr18:36,796,290...36,889,966
Ensembl chr18:36,829,062...36,889,966
JBrowse link
G Tdrd3 tudor domain containing 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:70,732,164...70,864,855
Ensembl chr15:70,790,125...70,859,185
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
G Thoc2 THO complex 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Thoc5 THO complex 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
G Thoc6 THO complex 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:12,989,135...12,994,495
Ensembl chr10:12,989,135...12,994,495
JBrowse link
G Thoc7 THO complex 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:12,569,235...12,584,101
Ensembl chr15:12,569,235...12,584,094
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:8,338,479...8,348,746
Ensembl chr 3:8,338,484...8,348,746
JBrowse link
G Tsen15 tRNA splicing endonuclease subunit 15 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:69,765,093...69,781,019
Ensembl chr13:69,765,091...69,781,019
JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:147,455,506...147,490,869
Ensembl chr 4:147,455,533...147,490,733
JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:64,023,924...64,031,756
Ensembl chr 1:64,024,240...64,030,175
Ensembl chr 1:64,024,240...64,030,175
JBrowse link
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:64,092,224...64,100,061
Ensembl chr 1:64,092,226...64,099,277
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:225,151,462...225,162,445
Ensembl chr 1:225,151,404...225,162,595
JBrowse link
G Tut4 terminal uridylyl transferase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
G Virma vir like m6A methyltransferase associated involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:25,042,743...25,121,403
Ensembl chr 5:25,042,710...25,120,264
JBrowse link
G Wtap WT1 associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:47,942,500...47,967,633
Ensembl chr 1:47,942,500...47,967,631
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
G Ybx1 Y box binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp830 zinc finger protein 830 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:70,118,250...70,119,714
Ensembl chr10:70,118,250...70,119,716
JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:263,864,088...263,877,872
Ensembl chr 2:263,864,331...263,877,821
JBrowse link
mRNA splice site selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:11158314)
(MGI:1930458|PMID:11158314)
PMID:21873635
RGD PMID:11158314, PMID:21873635, PMID:21873635 MGI:1930458, RGD:13792537, RGD:13792537 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 acts_upstream_of_or_within
involved_in
IEA
ISO
IBA
GO_REF:0000107
(MGI:1930458|PMID:11158314)
PMID:21873635
(PMID:11158314)
Ensembl
RGD
PMID:11158314, PMID:21873635, PMID:21873635 GO_REF:0000107 MGI:1930458, RGD:13792537, RGD:13792537 NCBI chr17:75,259,269...75,660,154
Ensembl chr17:75,352,389...75,654,951
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1930458|PMID:11158314)
PMID:21873635
RGD PMID:11158314, PMID:21873635, PMID:21873635 MGI:1930458, RGD:13792537, RGD:13792537 NCBI chr18:17,689,090...18,079,835
Ensembl chr18:17,698,038...17,716,880
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:11,095,449...11,119,941
Ensembl chr 7:11,095,468...11,119,941
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 8:64,364,491...64,428,452
Ensembl chr 8:64,364,741...64,428,386
JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:188,051,657...188,080,280
Ensembl chr 2:188,052,236...188,080,301
JBrowse link
G Luc7l LUC7-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:15,538,878...15,572,651
Ensembl chr10:15,538,872...15,568,638
JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:66,290,319...66,357,970
Ensembl chr 4:66,290,389...66,354,711
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:81,991,147...82,027,119
Ensembl chr10:81,991,147...82,027,119
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:2682447|PMID:14671308), (MGI:3655436|PMID:16717059) RGD PMID:14671308 PMID:16717059 MGI:2682447 MGI:3655436 NCBI chr 2:150,698,248...150,867,791
Ensembl chr 2:150,756,185...150,869,690
JBrowse link
G Nol3 nucleolar protein 3 involved_in ISO
ISS
IEA
(PMID:10196175)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:10196175 GO_REF:0000024 GO_REF:0000107 NCBI chr19:37,232,567...37,236,668
Ensembl chr19:37,235,001...37,236,649
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO MGI:4124189 (MGI:1859428|PMID:10829067), (MGI:5430666|PMID:22802532) RGD PMID:10829067 PMID:22802532 MGI:1859428 MGI:5430666 NCBI chr 2:223,261,444...223,323,075
Ensembl chr 2:223,262,852...223,322,585
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:117,129,237...117,140,234
Ensembl chr 7:117,129,237...117,140,214
JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:159,881,835...159,891,405
Ensembl chr  X:159,884,885...159,891,326
JBrowse link
G Rbmxl1 RBMX like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290, PMID:19282290 RGD:2316827, RGD:2316827 NCBI chr19:33,081,473...33,084,988
Ensembl chr19:33,083,412...33,084,915
JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:154,205,358...154,219,550
Ensembl chr 5:154,205,402...154,213,801
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO
ISS
IBA
(PMID:12549914)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:12549914, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 3:159,305,345...159,310,668
Ensembl chr 3:159,305,345...159,310,668
JBrowse link
G Ythdc1 YTH domain containing 1 involved_in ISO
ISS
(PMID:20167602)
GO_REF:0000024
RGD
UniProt
PMID:20167602 GO_REF:0000024 NCBI chr14:22,971,834...23,002,326
Ensembl chr14:22,971,836...23,002,011
JBrowse link
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 involved_in ISO (PMID:11779464), (PMID:19328063), (PMID:19622636), (PMID:20625543), (PMID:21317875) RGD PMID:11779464 PMID:19328063 PMID:19622636 PMID:20625543 PMID:21317875 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07008911.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:78,282,959...78,283,473 JBrowse link
G AABR07037800.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:31,054,394...31,055,344 JBrowse link
G AABR07042226.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:150,660,743...150,666,309 JBrowse link
G AABR07042323.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr  X:152,781,188...152,781,574 JBrowse link
G AABR07054367.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:150,135,821...150,153,775 JBrowse link
G AABR07055789.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:10,064,414...10,068,532 JBrowse link
G AC113901.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:78,427,178...78,427,751 JBrowse link
G AC126899.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr19:44,396,248...44,396,610 JBrowse link
G Aqr aquarius intron-binding spliceosomal factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 3:105,570,399...105,640,431
Ensembl chr 3:105,570,292...105,640,463
JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr 2:205,662,633...205,670,514
Ensembl chr 2:205,662,588...205,670,511
JBrowse link
G Bud13 BUD13 homolog involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(PMID:29360106)
UniProt
Ensembl
RGD
PMID:29360106, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr 8:50,573,026...50,588,860
Ensembl chr 8:50,573,026...50,588,858
JBrowse link
G Bud31 BUD31 homolog involved_in ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr12:11,232,963...11,240,449
Ensembl chr12:11,232,964...11,240,400
JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29301961)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29301961 GO_REF:0000024 GO_REF:0000107 NCBI chr10:86,724,534...86,744,485
Ensembl chr10:86,724,427...86,745,927
JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr20:48,503,973...48,574,546
Ensembl chr20:48,503,973...48,574,546
JBrowse link
G Cdc5l cell division cycle 5-like involved_in ISO
IBA
ISS
(PMID:28076346)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:28076346, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 9:17,949,764...17,988,514
Ensembl chr 9:17,949,764...17,988,509
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:28076346)
PMID:21873635
UniProt
RGD
PMID:28076346, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 6:18,349,226...18,351,540
Ensembl chr 6:18,349,167...18,351,536
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein involved_in ISS
ISO
GO_REF:0000024
(PMID:28076346)
UniProt
RGD
PMID:28076346 GO_REF:0000024 NCBI chr 8:12,994,131...13,004,958
Ensembl chr 8:12,994,155...13,004,957
JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog involved_in ISO
IBA
(PMID:29360106)
PMID:21873635
RGD PMID:29360106, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:64,731,145...64,780,127
Ensembl chr 3:64,731,381...64,766,472
JBrowse link
G Cwc25 CWC25 spliceosome-associated protein homolog involved_in ISO
IBA
(PMID:29301961)
PMID:21873635
RGD PMID:29301961, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:85,684,898...85,709,568
Ensembl chr10:85,684,898...85,709,568
JBrowse link
G Cwf19l1 CWF19 like cell cycle control factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:263,887,014...263,910,251
Ensembl chr 1:263,887,015...263,910,251
JBrowse link
G Cwf19l2 CWF19 like cell cycle control factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:18,970,616...19,037,176
Ensembl chr 6:18,970,564...19,055,924
JBrowse link
G Dbr1 debranching RNA lariats 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1890021|PMID:10982890)
PMID:21873635
RGD PMID:10982890, PMID:21873635, PMID:21873635 MGI:1890021, RGD:13792537, RGD:13792537 NCBI chr 8:107,826,690...107,838,186
Ensembl chr 8:107,826,424...107,838,339
JBrowse link
G Ddx23 DEAD-box helicase 23 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:140,325,453...140,342,730
Ensembl chr 7:140,325,431...140,342,727
JBrowse link
G Ddx39a DExD-box helicase 39A involved_in ISO
IBA
UniProtKB:Q07478 (PMID:15047853)
PMID:21873635
RGD PMID:15047853, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:24,846,530...24,854,886
Ensembl chr19:24,846,938...24,854,953
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO
IBA
UniProtKB:Q07478 (PMID:15047853)
PMID:21873635
RGD PMID:15047853, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in ISO
IBA
(PMID:25920683)
PMID:21873635
RGD PMID:25920683, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:9,631,925...9,637,317
Ensembl chr17:9,631,925...9,637,316
JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:9,475,275...9,519,545
Ensembl chr17:9,475,538...9,519,595
JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in ISO (PMID:20423332), (PMID:25296192), (PMID:29360106) RGD PMID:20423332 PMID:25296192 PMID:29360106 NCBI chr20:3,368,971...3,386,087
Ensembl chr20:3,367,150...3,386,106
JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in ISO
IBA
(PMID:9524131)
PMID:21873635
RGD PMID:9524131, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:42,110,291...42,127,540
Ensembl chr19:42,110,327...42,127,542
JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in ISO (PMID:28076346) RGD PMID:28076346 NCBI chr10:89,645,979...89,683,839
Ensembl chr10:89,645,973...89,683,446
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in ISO
IBA
(PMID:28076346)
PMID:21873635
RGD PMID:28076346, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:90,932,071...90,983,971
Ensembl chr10:90,932,075...90,983,928
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISS
ISO
GO_REF:0000024
(PMID:29301961)
UniProt
RGD
PMID:29301961 GO_REF:0000024 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:112,662,556...112,700,505
Ensembl chr 4:112,662,609...112,699,711
JBrowse link
G Gpkow G patch domain and KOW motifs involved_in ISO
IBA
(PMID:25296192)
PMID:21873635
RGD PMID:25296192, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr  X:15,636,567...15,651,332
Ensembl chr  X:15,636,563...15,651,332
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
ISS
IEA
(PMID:26321680)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:26321680 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO
ISS
(PMID:25719671)
GO_REF:0000024
RGD
UniProt
PMID:25719671 GO_REF:0000024 NCBI chr15:28,486,605...28,517,353
Ensembl chr15:28,486,617...28,517,353
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:18,516,253...18,554,536
Ensembl chr 7:18,516,512...18,554,227
JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:159,514,053...159,528,281
Ensembl chr  X:159,513,800...159,528,281
JBrowse link
G Ik IK cytokine involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:28781166)
UniProt
RGD
PMID:28781166, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:29,587,901...29,602,705
Ensembl chr18:29,587,901...29,608,338
JBrowse link
G Isy1 ISY1 splicing factor homolog involved_in ISS
ISO
GO_REF:0000024
(PMID:29301961)
UniProt
RGD
PMID:29301961 GO_REF:0000024 NCBI chr 4:119,721,659...119,742,349
Ensembl chr 4:119,721,660...119,742,349
JBrowse link
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like involved_in ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 1:281,863,115...281,864,546
Ensembl chr 1:281,863,918...281,864,304
Ensembl chr 7:281,863,918...281,864,304
JBrowse link
G LOC100360750 Sm protein F-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:47,380,376...47,382,933
Ensembl chr13:47,380,406...47,382,955
Ensembl chr19:47,380,406...47,382,955
JBrowse link
G LOC102548514 crooked neck-like protein 1-like involved_in ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 3:140,125,232...140,141,730
Ensembl chr 3:140,126,797...140,141,679
JBrowse link
G LOC108348453 calsequestrin-1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,440,153...6,467,211
Ensembl chr16:6,434,468...6,478,396
JBrowse link
G LOC500684 hypothetical protein LOC500684 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:103,932,428...103,935,122
Ensembl chr 6:103,932,428...103,935,122
JBrowse link
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:91,588,215...91,588,629
Ensembl chr 4:118,167,294...118,174,842
Ensembl chr 1:118,167,294...118,174,842
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:10369684), (PMID:10523320), (PMID:28781166)
PMID:21873635
RGD PMID:10369684 PMID:10523320 PMID:28781166, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) RGD PMID:28781166 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO
IBA
(PMID:28781166)
PMID:21873635
RGD PMID:28781166, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G