Rps21 (ribosomal protein S21) - Rat Genome Database

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Gene: Rps21 (ribosomal protein S21) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps21
Name: ribosomal protein S21
RGD ID: 621038
Description: Predicted to have ribosome binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Localizes to cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; .
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 40S ribosomal protein S21
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Pseudogenes: Rps21-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,346,437 - 167,347,459 (+)NCBI
Rnor_6.0 Ensembl3175,629,374 - 175,630,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03175,629,176 - 175,630,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03181,484,784 - 181,485,902 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,311,205 - 169,312,227 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13169,217,240 - 169,218,262 (+)NCBI
Celera3165,232,803 - 165,233,825 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:3910104   PMID:15489334   PMID:16751776   PMID:22871113  


Genomics

Position Markers
RH141919  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.03175,630,345 - 175,630,559NCBIRnor6.0
Rnor_5.03181,484,430 - 181,484,644UniSTSRnor5.0
RGSC_v3.43169,312,374 - 169,312,588UniSTSRGSC3.4
Celera3165,232,442 - 165,232,656UniSTS
RH 3.4 Map31527.8UniSTS
Cytogenetic Map3q43UniSTS
AI232413  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.03175,629,324 - 175,629,766NCBIRnor6.0
Rnor_5.03181,485,223 - 181,485,665UniSTSRnor5.0
RGSC_v3.43169,311,353 - 169,311,795UniSTSRGSC3.4
Celera3165,233,235 - 165,233,677UniSTS
RH 3.4 Map31525.0UniSTS
Cytogenetic Map3q43UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)3103141814176418101Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)3103141814176418101Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3103141814176418101Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3129787213177699992Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3132875075176418101Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3138374177177699992Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3138374177177699992Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3139578365177699992Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3146232777177699992Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3148034701177699992Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3150368003177699992Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3153412455177699992Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3153918022177699992Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3156381661176418101Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3170428815177699992Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:22
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000008458
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 12 15 14 2 14 32 14 28
Medium 3 31 43 27 17 27 8 11 42 21 13 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ610337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB462029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB867501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB868380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB871637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB879498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB889343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC924910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC925789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC929046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC936907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC946752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X79059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000084027   ⟹   ENSRNOP00000070217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3175,629,374 - 175,630,048 (+)Ensembl
RefSeq Acc Id: NM_031111   ⟹   NP_112373
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,346,437 - 167,347,459 (+)NCBI
Rnor_6.03175,629,176 - 175,630,198 (+)NCBI
Rnor_5.03181,484,784 - 181,485,902 (-)NCBI
RGSC_v3.43169,311,205 - 169,312,227 (+)RGD
Celera3165,232,803 - 165,233,825 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_112373   ⟸   NM_031111
- UniProtKB: P05765 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070217   ⟸   ENSRNOT00000084027

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621038 AgrOrtholog
Ensembl Genes ENSRNOG00000060449 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070217 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084027 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.30.1230.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6918340 IMAGE-MGC_LOAD
InterPro Ribosomal_S21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S21e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S21e_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81775 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72789 IMAGE-MGC_LOAD
NCBI Gene 81775 ENTREZGENE
PANTHER PTHR10442 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps21 PhenoGen
PIRSF Ribosomal_S21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S21E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JXC3_RAT UniProtKB/TrEMBL
  P05765 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rps21  ribosomal protein S21      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rps21  ribosomal protein S21      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 83 amino acids and a molecular weight of 9,121 633962