PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) - Rat Genome Database

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Gene: PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) Homo sapiens
Symbol: PIK3R1
Name: phosphoinositide-3-kinase regulatory subunit 1
RGD ID: 731958
Description: Enables several functions, including insulin binding activity; phosphotyrosine residue binding activity; and signaling receptor binding activity. Involved in several processes, including phosphatidylinositol 3-kinase signaling; positive regulation of RNA metabolic process; and transmembrane receptor protein tyrosine kinase signaling pathway. Located in cytoplasm. Implicated in several diseases, including SHORT syndrome; astroblastoma; endometrial cancer (multiple); immunodeficiency 36; and type 2 diabetes mellitus. Biomarker of astroblastoma; colorectal cancer; lung adenocarcinoma; prostate cancer; and renal cell carcinoma.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AGM7; GRB1; IMD36; p85; p85-ALPHA; phosphatidylinositol 3-kinase 85 kDa regulatory subunit alpha; phosphatidylinositol 3-kinase regulatory subunit alpha; phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1; phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha); phosphatidylinositol 3-kinase, regulatory, 1; phosphatidylinositol 3-kinase-associated p-85 alpha; phosphoinositide-3-kinase regulatory subunit; phosphoinositide-3-kinase regulatory subunit alpha; phosphoinositide-3-kinase, regulatory subunit 1 (alpha); PI3-kinase regulatory subunit alpha; PI3-kinase subunit p85-alpha; PI3K regulatory subunit alpha; ptdIns-3-kinase regulatory subunit alpha; ptdIns-3-kinase regulatory subunit p85-alpha
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl568,215,756 - 68,301,821 (+)EnsemblGRCh38hg38GRCh38
GRCh38568,215,737 - 68,301,821 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37567,511,584 - 67,597,649 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36567,558,218 - 67,633,405 (+)NCBINCBI36hg18NCBI36
Build 34567,622,250 - 67,633,403NCBI
Celera564,520,829 - 64,597,175 (+)NCBI
Cytogenetic Map5q13.1NCBI
HuRef564,468,818 - 64,555,164 (+)NCBIHuRef
CHM1_1567,511,846 - 67,597,747 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,5-hexanedione  (ISO)
2-butoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methyladenine  (EXP)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-butylphenol  (EXP)
9-cis-retinoic acid  (ISO)
acetylsalicylic acid  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
anthocyanin  (ISO)
arecoline  (ISO)
aristolochic acid  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atazanavir sulfate  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bexarotene  (EXP)
bilirubin IXalpha  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (EXP)
bromobenzene  (ISO)
cadmium atom  (ISO)
cantharidin  (EXP)
capsaicin  (ISO)
capsazepine  (ISO)
carbamazepine  (EXP)
carbon nanotube  (ISO)
celastrol  (EXP)
chenodeoxycholic acid  (EXP)
chlorogenic acid  (ISO)
chromium atom  (ISO)
ciguatoxin CTX1B  (ISO)
cis-caffeic acid  (ISO)
cisplatin  (EXP)
clobetasol  (ISO)
cobalt dichloride  (EXP)
coenzyme Q10  (ISO)
conjugated linoleic acid  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP)
daunorubicin  (EXP)
deoxycholic acid  (EXP)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
diclofenac  (EXP,ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (EXP)
entinostat  (EXP)
ethanol  (ISO)
eugenol  (ISO)
ferulic acid  (ISO)
folic acid  (EXP,ISO)
fonofos  (EXP)
formaldehyde  (EXP)
fructose  (ISO)
furan  (ISO)
Garcinol  (EXP)
gedunin  (EXP)
geldanamycin  (EXP)
geraniol  (ISO)
glucose  (EXP)
glycochenodeoxycholic acid  (EXP)
glycocholic acid  (EXP)
glycodeoxycholic acid  (EXP)
glyphosate  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hesperidin  (ISO)
HU-308  (ISO)
hydrazines  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (EXP)
indole-3-methanol  (ISO)
indometacin  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
iron(2+) sulfate (anhydrous)  (ISO)
isoprenaline  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
linsidomine  (ISO)
LY294002  (EXP)
melphalan  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mevinphos  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-acetyl-L-cysteine  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
naringin  (ISO)
nefazodone  (EXP)
Neferine  (EXP,ISO)
Nonylphenol  (ISO)
obeticholic acid  (EXP)
olanzapine  (ISO)
paeoniflorin  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
parathion  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
quercetin  (EXP,ISO)
quercetin 3-O-beta-D-glucofuranoside  (EXP)
quercetin 3-O-beta-D-glucopyranoside  (EXP)
quercitrin  (EXP)
reactive oxygen species  (EXP)
resveratrol  (EXP,ISO)
retinyl acetate  (ISO)
rivastigmine  (ISO)
rotenone  (ISO)
ruthenium red  (ISO)
SB 431542  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
terbufos  (EXP)
tert-butyl hydroperoxide  (EXP)
testosterone  (ISO)
thiazolidinediones  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trans-caffeic acid  (ISO)
trans-cinnamic acid  (ISO)
tremolite asbestos  (ISO)
trichostatin A  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
uranium atom  (EXP)
urethane  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (EXP)
wortmannin  (EXP,ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (ISO)
B cell differentiation  (IEA,ISO)
cellular glucose homeostasis  (ISS)
cellular response to fatty acid  (ISO)
cellular response to insulin stimulus  (ISO,ISS)
cellular response to UV  (IEA,ISO)
extrinsic apoptotic signaling pathway via death domain receptors  (IEA,ISO)
glucose metabolic process  (ISO)
growth hormone receptor signaling pathway  (IDA)
insulin receptor signaling pathway  (IBA,ISO)
insulin-like growth factor receptor signaling pathway  (IDA,IPI,ISO)
intrinsic apoptotic signaling pathway in response to DNA damage  (IEA,ISO)
negative regulation of apoptotic process  (IMP,ISO)
negative regulation of blood pressure  (ISO)
negative regulation of cell adhesion  (ISO)
negative regulation of cell-cell adhesion  (ISO)
negative regulation of cell-matrix adhesion  (IEA,ISO)
negative regulation of heart rate  (ISO)
negative regulation of muscle cell apoptotic process  (ISO)
negative regulation of osteoclast differentiation  (IEA,ISO)
negative regulation of proteolysis  (ISO)
negative regulation of smooth muscle cell proliferation  (ISO)
negative regulation of stress fiber assembly  (ISS)
phosphatidylinositol 3-kinase signaling  (IDA,IMP)
phosphatidylinositol phosphate biosynthetic process  (IBA,ISS)
positive regulation of cell migration  (IEA,ISO)
positive regulation of endoplasmic reticulum unfolded protein response  (IMP)
positive regulation of filopodium assembly  (ISS)
positive regulation of focal adhesion disassembly  (ISS)
positive regulation of gene expression  (ISO)
positive regulation of glucose import  (ISS)
positive regulation of lamellipodium assembly  (ISS)
positive regulation of myoblast differentiation  (ISO)
positive regulation of protein import into nucleus  (IDA)
positive regulation of protein localization to plasma membrane  (ISS)
positive regulation of protein phosphorylation  (ISO)
positive regulation of RNA splicing  (IMP)
positive regulation of synapse assembly  (ISO)
positive regulation of transcription by RNA polymerase II  (IMP,ISO,ISS)
positive regulation of tumor necrosis factor production  (IEA,ISO)
protein import into nucleus  (IEA,ISO)
protein phosphorylation  (IEA,ISO)
protein stabilization  (IDA)
regulation of insulin receptor signaling pathway  (IEA,ISO)
regulation of phosphatidylinositol 3-kinase activity  (IBA,ISO,ISS)
regulation of protein localization to plasma membrane  (ISO)
regulation of stress fiber assembly  (ISO)
response to amino acid  (ISO)
response to cAMP  (ISO)
response to dexamethasone  (ISO)
response to endoplasmic reticulum stress  (IDA,ISS)
response to estradiol  (ISO)
response to ethanol  (ISO)
response to fatty acid  (ISO)
response to fructose  (ISO)
response to glucocorticoid  (ISO)
response to growth factor  (ISO)
response to insulin  (ISO)
response to iron(II) ion  (ISO)
response to nutrient  (ISO)
response to progesterone  (ISO)
response to testosterone  (ISO)
response to xenobiotic stimulus  (ISO)
response to yeast  (ISO)
signal transduction  (IEA)
substrate adhesion-dependent cell spreading  (ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
acute myeloid leukemia pathway  (IEA)
aldosterone signaling pathway  (IEA)
apoptotic cell death pathway  (IEA)
B cell receptor signaling pathway  (IEA)
ceramide signaling pathway  (IEA)
Chagas disease pathway  (IEA)
chronic myeloid leukemia pathway  (IEA)
colorectal cancer pathway  (IEA)
E-cadherin signaling pathway  (EXP)
endometrial cancer pathway  (IEA)
Entamoebiasis pathway  (IEA)
ephrin - ephrin receptor bidirectional signaling axis  (EXP)
epidermal growth factor/neuregulin signaling pathway  (EXP,IEA,TAS)
erythropoietin signaling pathway  (EXP)
FasL mediated signaling pathway  (EXP)
Fc epsilon receptor mediated signaling pathway  (EXP)
fibroblast growth factor signaling pathway  (EXP)
glioma pathway  (IEA)
granulocyte-macrophage colony-stimulating factor signaling pathway  (EXP)
Hedgehog signaling pathway  (EXP)
hepatitis C pathway  (IEA)
insulin signaling pathway  (EXP,IEA,ISO)
insulin-like growth factor signaling pathway  (EXP)
interleukin-1 signaling pathway  (EXP)
interleukin-2 signaling pathway  (EXP)
interleukin-23 signaling pathway  (EXP)
interleukin-3 signaling pathway  (EXP)
interleukin-4 signaling pathway  (EXP)
interleukin-5 signaling pathway  (EXP)
interleukin-6 signaling pathway  (EXP)
Jak-Stat signaling pathway  (IEA)
measles pathway  (IEA)
melanoma pathway  (IEA)
mTOR signaling pathway  (IEA)
N-cadherin signaling pathway  (EXP)
neurotrophic factor signaling pathway  (IEA)
non-small cell lung carcinoma pathway  (IEA)
nuclear factor kappa B signaling pathway  (EXP)
pancreatic cancer pathway  (IEA)
phosphatidylinositol 3-kinase class I signaling pathway  (EXP)
phosphatidylinositol 3-kinase signaling pathway  (IEA)
phosphatidylinositol 3-kinase-Akt signaling pathway  (TAS)
phosphoinositide metabolic pathway  (EXP)
platelet-derived growth factor signaling pathway  (EXP)
prostate cancer pathway  (IEA)
Reelin signaling pathway  (EXP,ISO)
renal cell carcinoma pathway  (IEA)
scatter factor/hepatocyte growth factor signaling pathway  (TAS)
small cell lung carcinoma pathway  (IEA)
T cell receptor signaling pathway  (IEA)
Toll-like receptor signaling pathway  (IEA)
toxoplasmosis pathway  (IEA)
Trail mediated signaling pathway  (EXP)
type 2 diabetes mellitus pathway  (IEA)
type II interferon signaling pathway  (EXP)
vascular endothelial growth factor signaling pathway  (EXP,IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal anterior chamber morphology  (IAGP)
Abnormal dental enamel morphology  (IAGP)
Abnormal pupil morphology  (IAGP)
Abnormality of the immune system  (IAGP)
Abnormality of the mandible  (IAGP)
Abnormality of the skin  (IAGP)
Agammaglobulinemia  (IAGP)
Alopecia  (IAGP)
Arthritis  (IAGP)
Autoimmunity  (IAGP)
Autosomal dominant inheritance  (IAGP)
Autosomal recessive inheritance  (IAGP)
B-cell lymphoma  (IAGP)
Birth length less than 3rd percentile  (IAGP)
Brachydactyly  (IAGP)
Brain neoplasm  (IAGP)
Bronchiectasis  (IAGP)
Cataract  (IAGP)
Cellulitis  (IAGP)
Chronic diarrhea  (IAGP)
Chronic lymphatic leukemia  (IAGP)
Chronic otitis media  (IAGP)
Clinodactyly  (IAGP)
Conjunctivitis  (IAGP)
Corneal opacity  (IAGP)
Cough  (IAGP)
Decreased circulating antibody level  (IAGP)
Deeply set eye  (IAGP)
Dehydration  (IAGP)
Delayed eruption of teeth  (IAGP)
Delayed skeletal maturation  (IAGP)
Delayed speech and language development  (IAGP)
Dental malocclusion  (IAGP)
Diabetes mellitus  (IAGP)
Diarrhea  (IAGP)
Dimple chin  (IAGP)
Downturned corners of mouth  (IAGP)
Enlarged epiphyses  (IAGP)
Epicanthus  (IAGP)
Excessive wrinkled skin  (IAGP)
External ear malformation  (IAGP)
Failure to thrive  (IAGP)
Fatigue  (IAGP)
Fever  (IAGP)
Frontal bossing  (IAGP)
Glaucoma  (IAGP)
Glioblastoma multiforme  (IAGP)
Hepatitis  (IAGP)
High palate  (IAGP)
Hyperglycemia  (IAGP)
Hypertelorism  (IAGP)
Hypodontia  (IAGP)
Hypoplasia of the iris  (IAGP)
Immunodeficiency  (IAGP)
Infantile onset  (IAGP)
Inguinal hernia  (IAGP)
Insulin resistance  (IAGP)
Insulin-resistant diabetes mellitus  (IAGP)
Intrauterine growth retardation  (IAGP)
Joint hyperflexibility  (IAGP)
Joint laxity  (IAGP)
Lipoatrophy  (IAGP)
Lipodystrophy  (IAGP)
Lymphopenia  (IAGP)
Macrotia  (IAGP)
Malabsorption  (IAGP)
Malar flattening  (IAGP)
Megalocornea  (IAGP)
Meningitis  (IAGP)
Microdontia  (IAGP)
Micrognathia  (IAGP)
Midface retrusion  (IAGP)
Myopia  (IAGP)
Neoplasm  (IAGP)
Neoplasm of the large intestine  (IAGP)
Neurodevelopmental delay  (IAGP)
Neurological speech impairment  (IAGP)
Neutropenia  (IAGP)
Osteomyelitis  (IAGP)
Poor appetite  (IAGP)
Posterior embryotoxon  (IAGP)
Premature skin wrinkling  (IAGP)
Prominent forehead  (IAGP)
Prominent supraorbital ridges  (IAGP)
Prostate cancer  (IAGP)
Radial deviation of finger  (IAGP)
Recurrent bacterial infections  (IAGP)
Recurrent respiratory infections  (IAGP)
Recurrent skin infections  (IAGP)
Rieger anomaly  (IAGP)
Sensorineural hearing impairment  (IAGP)
Sepsis  (IAGP)
Severe short stature  (IAGP)
Short palm  (IAGP)
Short stature  (IAGP)
Sinusitis  (IAGP)
Skin rash  (IAGP)
Small for gestational age  (IAGP)
Sparse hair  (IAGP)
Splenomegaly  (IAGP)
Telecanthus  (IAGP)
Thin skin  (IAGP)
Triangular face  (IAGP)
Underdeveloped nasal alae  (IAGP)
Verrucae  (IAGP)
Weight loss  (IAGP)
Wide nasal bridge  (IAGP)

References - curated
1. Barroso I, etal., PLoS Biol. 2003 Oct;1(1):E20. Epub 2003 Oct 13.
2. Birchmeier C, etal., Nat Rev Mol Cell Biol. 2003 Dec;4(12):915-25.
3. Cai J, etal., J Biol Chem. 2015 Oct 9;290(41):24678-88. doi: 10.1074/jbc.M115.649004. Epub 2015 Aug 18.
4. Cancer Genome Atlas Research Network, etal., Nature. 2013 May 2;497(7447):67-73. doi: 10.1038/nature12113.
5. Cheung LW, etal., Cancer Discov. 2011 Jul;1(2):170-85. doi: 10.1158/2159-8290.CD-11-0039. Epub 2011 Jun 7.
6. Citri A and Yarden Y, Nat Rev Mol Cell Biol. 2006 Jul;7(7):505-16.
7. Ekladous D, etal., Clin Exp Pharmacol Physiol. 2008 Aug;35(8):971-8. Epub 2008 Apr 21.
8. Engelman JA, etal., Nat Rev Genet. 2006 Aug;7(8):606-19.
9. Fukao T, etal., Nat Immunol 2002 Mar;3(3):295-304.
10. Gentile A, etal., Cancer Metastasis Rev. 2008 Mar;27(1):85-94.
11. Hellwinkel OJ, etal., BJU Int. 2008 Jun;101(11):1454-60. Epub 2008 Mar 11.
12. Hirsch E, etal., J Endocrinol. 2007 Aug;194(2):243-56.
13. Jiang W, etal., Biomed Res Int. 2017;2017:6501385. doi: 10.1155/2017/6501385. Epub 2017 Feb 9.
14. Kawanaka H, etal., Hepatology. 2002 Feb;35(2):393-402.
15. Kerouz NJ, etal., J Clin Invest. 1997 Dec 15;100(12):3164-72.
16. Khamzina L, etal., Gastroenterology 2003 Aug;125(2):572-85.
17. Kim YH, etal., Diabetes. 2008 Aug;57(8):2181-90. Epub 2008 Apr 28.
18. Lin Y, etal., Sci Rep. 2015 Mar 11;5:8997. doi: 10.1038/srep08997.
19. Liolitsa D, etal., J Neurol Neurosurg Psychiatry. 2002 Sep;73(3):261-6.
20. Liu C, etal., Transplant Proc. 2008 Dec;40(10):3330-4.
21. Majumdar AP and Du J, Am J Physiol Gastrointest Liver Physiol. 2006 Jan;290(1):G49-55. Epub 2005 Aug 25.
22. Mosley JD, etal., Mol Cancer Ther. 2007 Aug;6(8):2188-97.
23. Nowakowska-Zajdel E, etal., Int J Immunopathol Pharmacol. 2011 Jul-Sep;24(3):781-7.
24. OMIM Disease Annotation Pipeline
25. Patti ME, etal., Diabetes. 1999 Aug;48(8):1562-71.
26. Pipeline to import KEGG annotations from KEGG into RGD
27. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
28. Pipeline to import SMPDB annotations from SMPDB into RGD
29. Qiu S, etal., J Neurosci. 2006 Dec 13;26(50):12943-55.
30. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
31. RGD automated import pipeline for gene-chemical interactions
32. RGD automated import pipeline for human HPO-to-gene-to-disease annotations
33. Scioscia M, etal., J Clin Endocrinol Metab. 2006 Feb;91(2):709-17. Epub 2005 Dec 6.
34. Taniguchi CM, etal., Mol Cell Biol. 2007 Apr;27(8):2830-40. Epub 2007 Feb 5.
35. Terauchi Y, etal., Nat Genet 1999 Feb;21(2):230-5.
36. Urick ME, etal., Cancer Res. 2011 Jun 15;71(12):4061-7. doi: 10.1158/0008-5472.CAN-11-0549. Epub 2011 Apr 8.
37. Varghese RT, etal., Oncotarget. 2016 Mar 4. doi: 10.18632/oncotarget.7917.
38. Wu H, etal., Eur J Cancer Prev. 2016 Nov;25(6):508-17. doi: 10.1097/CEJ.0000000000000214.
39. Zhang H, etal., J Hypertens. 2008 Mar;26(3):560-9.
40. Zubcevic J, etal., Hypertension. 2009 Jan;53(1):97-103. Epub 2008 Nov 17.
Additional References at PubMed
PMID:1314164   PMID:1314371   PMID:1330535   PMID:1334490   PMID:1336372   PMID:1351056   PMID:1372091   PMID:1372092   PMID:1379243   PMID:1380456   PMID:1381348   PMID:1382595  
PMID:1383690   PMID:1648445   PMID:1849461   PMID:2174051   PMID:7499252   PMID:7504174   PMID:7509360   PMID:7509794   PMID:7509796   PMID:7513258   PMID:7520528   PMID:7522165  
PMID:7528218   PMID:7531698   PMID:7536927   PMID:7537096   PMID:7537265   PMID:7537275   PMID:7537361   PMID:7537362   PMID:7537849   PMID:7541045   PMID:7544353   PMID:7559499  
PMID:7568038   PMID:7584133   PMID:7589433   PMID:7592789   PMID:7629060   PMID:7642542   PMID:7642581   PMID:7642582   PMID:7657594   PMID:7659087   PMID:7662955   PMID:7678051  
PMID:7680095   PMID:7680644   PMID:7681364   PMID:7689147   PMID:7689724   PMID:7692233   PMID:7737275   PMID:7737969   PMID:7759531   PMID:7782332   PMID:7791764   PMID:7797556  
PMID:7807015   PMID:7876130   PMID:7929193   PMID:7935461   PMID:7957566   PMID:7982920   PMID:8034624   PMID:8052599   PMID:8084603   PMID:8125298   PMID:8139559   PMID:8146197  
PMID:8164687   PMID:8175658   PMID:8183372   PMID:8246987   PMID:8253717   PMID:8276809   PMID:8294442   PMID:8313897   PMID:8321198   PMID:8382612   PMID:8384556   PMID:8385099  
PMID:8388384   PMID:8388538   PMID:8394019   PMID:8440175   PMID:8564419   PMID:8567177   PMID:8596638   PMID:8599763   PMID:8603569   PMID:8612729   PMID:8621607   PMID:8621719  
PMID:8628286   PMID:8631888   PMID:8636073   PMID:8647120   PMID:8647168   PMID:8647200   PMID:8648629   PMID:8649427   PMID:8662998   PMID:8670861   PMID:8695807   PMID:8697095  
PMID:8702385   PMID:8702949   PMID:8702998   PMID:8766817   PMID:8781408   PMID:8798481   PMID:8805332   PMID:8810341   PMID:8896416   PMID:8910607   PMID:8916957   PMID:8918464  
PMID:8918688   PMID:8941725   PMID:8947469   PMID:8961927   PMID:8962058   PMID:8995243   PMID:9032108   PMID:9079809   PMID:9092538   PMID:9113989   PMID:9123823   PMID:9130710  
PMID:9139718   PMID:9150145   PMID:9153411   PMID:9160881   PMID:9162069   PMID:9174058   PMID:9178760   PMID:9178903   PMID:9223670   PMID:9233773   PMID:9234717   PMID:9235916  
PMID:9247029   PMID:9259313   PMID:9268059   PMID:9312149   PMID:9334184   PMID:9341793   PMID:9356464   PMID:9360994   PMID:9361008   PMID:9381982   PMID:9394803   PMID:9398332  
PMID:9414268   PMID:9417079   PMID:9435577   PMID:9446654   PMID:9446795   PMID:9452499   PMID:9461587   PMID:9461588   PMID:9489702   PMID:9541596   PMID:9564850   PMID:9565634  
PMID:9593725   PMID:9610355   PMID:9614102   PMID:9632636   PMID:9632795   PMID:9658397   PMID:9660791   PMID:9687533   PMID:9708406   PMID:9756944   PMID:9761740   PMID:9774384  
PMID:9774657   PMID:9801792   PMID:9804835   PMID:9808187   PMID:9813138   PMID:9820515   PMID:9852124   PMID:9886492   PMID:9890943   PMID:9890970   PMID:9891995   PMID:9892650  
PMID:9918857   PMID:9988765   PMID:10022120   PMID:10022833   PMID:10025673   PMID:10026141   PMID:10068651   PMID:10086340   PMID:10097090   PMID:10187839   PMID:10208934   PMID:10212255  
PMID:10339567   PMID:10358153   PMID:10358157   PMID:10358777   PMID:10358930   PMID:10373529   PMID:10377409   PMID:10383151   PMID:10422873   PMID:10426994   PMID:10437794   PMID:10455176  
PMID:10459020   PMID:10467411   PMID:10477752   PMID:10487518   PMID:10500481   PMID:10521483   PMID:10527852   PMID:10542297   PMID:10571082   PMID:10572067   PMID:10579793   PMID:10620516  
PMID:10627473   PMID:10648629   PMID:10652352   PMID:10660596   PMID:10697503   PMID:10723796   PMID:10752619   PMID:10768093   PMID:10797305   PMID:10799562   PMID:10806474   PMID:10811803  
PMID:10820259   PMID:10871282   PMID:10887121   PMID:10899172   PMID:10918571   PMID:10921882   PMID:10962556   PMID:10962563   PMID:10967104   PMID:10970851   PMID:10973983   PMID:10978177  
PMID:10985305   PMID:10995743   PMID:10995764   PMID:11029009   PMID:11030146   PMID:11042121   PMID:11071635   PMID:11071869   PMID:11087752   PMID:11094073   PMID:11104793   PMID:11119718  
PMID:11123912   PMID:11133830   PMID:11136977   PMID:11154208   PMID:11156964   PMID:11157475   PMID:11160222   PMID:11163197   PMID:11278378   PMID:11287610   PMID:11289809   PMID:11313349  
PMID:11334882   PMID:11337495   PMID:11341978   PMID:11368773   PMID:11375989   PMID:11389077   PMID:11403293   PMID:11416002   PMID:11418612   PMID:11431473   PMID:11438664   PMID:11445578  
PMID:11526404   PMID:11546794   PMID:11567151   PMID:11593409   PMID:11604231   PMID:11606067   PMID:11689445   PMID:11689561   PMID:11689886   PMID:11694521   PMID:11710529   PMID:11711534  
PMID:11716761   PMID:11739737   PMID:11741599   PMID:11782427   PMID:11796522   PMID:11812000   PMID:11842213   PMID:11850823   PMID:11855827   PMID:11865050   PMID:11896612   PMID:11912194  
PMID:11940581   PMID:11944898   PMID:11964397   PMID:11986952   PMID:11994280   PMID:11994282   PMID:12009866   PMID:12029088   PMID:12052866   PMID:12074588   PMID:12077252   PMID:12086876  
PMID:12107746   PMID:12112020   PMID:12167717   PMID:12173038   PMID:12186904   PMID:12210743   PMID:12220227   PMID:12359715   PMID:12393736   PMID:12397383   PMID:12454018   PMID:12470648  
PMID:12477932   PMID:12506011   PMID:12526811   PMID:12529960   PMID:12538575   PMID:12538664   PMID:12551992   PMID:12582030   PMID:12584329   PMID:12588990   PMID:12594831   PMID:12621049  
PMID:12637493   PMID:12644569   PMID:12660731   PMID:12668683   PMID:12704201   PMID:12714585   PMID:12730242   PMID:12734410   PMID:12774123   PMID:12783867   PMID:12878163   PMID:12896906  
PMID:12960231   PMID:14511371   PMID:14530346   PMID:14597629   PMID:14602571   PMID:14632132   PMID:14699157   PMID:14702039   PMID:14729945   PMID:14769856   PMID:14965316   PMID:14968112  
PMID:15007072   PMID:15016818   PMID:15107835   PMID:15117958   PMID:15127203   PMID:15187135   PMID:15192701   PMID:15324660   PMID:15351743   PMID:15377662   PMID:15385169   PMID:15388330  
PMID:15476827   PMID:15488758   PMID:15489334   PMID:15490304   PMID:15502848   PMID:15514089   PMID:15536084   PMID:15539082   PMID:15556646   PMID:15581361   PMID:15629149   PMID:15638726  
PMID:15644415   PMID:15657037   PMID:15689238   PMID:15735664   PMID:15741161   PMID:15809724   PMID:15812817   PMID:15826941   PMID:15845362   PMID:15872086   PMID:15910625   PMID:15932879  
PMID:15951569   PMID:16043515   PMID:16081599   PMID:16135792   PMID:16150444   PMID:16168140   PMID:16219545   PMID:16228294   PMID:16230374   PMID:16253990   PMID:16273093   PMID:16289966  
PMID:16306077   PMID:16344560   PMID:16354680   PMID:16371368   PMID:16377635   PMID:16412560   PMID:16491394   PMID:16524887   PMID:16571724   PMID:16638574   PMID:16644730   PMID:16717100  
PMID:16787925   PMID:16843263   PMID:16844778   PMID:16858407   PMID:16880210   PMID:16917505   PMID:16921024   PMID:16964398   PMID:16982329   PMID:17006756   PMID:17013094   PMID:17016694  
PMID:17038539   PMID:17043237   PMID:17157319   PMID:17207965   PMID:17214991   PMID:17237826   PMID:17242350   PMID:17242406   PMID:17302605   PMID:17353931   PMID:17404186   PMID:17437541  
PMID:17442886   PMID:17452978   PMID:17474147   PMID:17486587   PMID:17500595   PMID:17570359   PMID:17595318   PMID:17626883   PMID:17632516   PMID:17632570   PMID:17640984   PMID:17827393  
PMID:17890432   PMID:17925405   PMID:18029348   PMID:18059340   PMID:18079394   PMID:18165436   PMID:18227218   PMID:18245521   PMID:18249389   PMID:18299448   PMID:18328427   PMID:18335044  
PMID:18346204   PMID:18372911   PMID:18374639   PMID:18387942   PMID:18412956   PMID:18418043   PMID:18453587   PMID:18467332   PMID:18534979   PMID:18606683   PMID:18624398   PMID:18641334  
PMID:18660489   PMID:18711014   PMID:18803287   PMID:18854243   PMID:18974049   PMID:18990689   PMID:18996102   PMID:19117013   PMID:19190244   PMID:19218574   PMID:19286672   PMID:19304514  
PMID:19336760   PMID:19351817   PMID:19380743   PMID:19454690   PMID:19482007   PMID:19531499   PMID:19561084   PMID:19574958   PMID:19578796   PMID:19634059   PMID:19635806   PMID:19639178  
PMID:19640849   PMID:19681044   PMID:19747165   PMID:19805105   PMID:19807924   PMID:19861161   PMID:19864249   PMID:19885597   PMID:19889638   PMID:19903481   PMID:19903888   PMID:19913121  
PMID:19946888   PMID:19962665   PMID:20007781   PMID:20018188   PMID:20019835   PMID:20056178   PMID:20086096   PMID:20212113   PMID:20227043   PMID:20237496   PMID:20348923   PMID:20379614  
PMID:20407443   PMID:20457601   PMID:20501401   PMID:20530665   PMID:20541701   PMID:20598684   PMID:20602615   PMID:20624904   PMID:20628086   PMID:20702582   PMID:20711237   PMID:20713702  
PMID:20714879   PMID:20800603   PMID:20805333   PMID:20818790   PMID:20846792   PMID:20936779   PMID:21029719   PMID:21057544   PMID:21075308   PMID:21077741   PMID:21113646   PMID:21145461  
PMID:21200133   PMID:21203488   PMID:21241768   PMID:21278786   PMID:21282515   PMID:21321938   PMID:21362552   PMID:21430300   PMID:21487925   PMID:21533174   PMID:21701776   PMID:21706016  
PMID:21743495   PMID:21765914   PMID:21825134   PMID:21827948   PMID:21873635   PMID:21946561   PMID:21954290   PMID:21988832   PMID:21996738   PMID:22020336   PMID:22027828   PMID:22064833  
PMID:22120714   PMID:22242145   PMID:22271581   PMID:22355357   PMID:22402981   PMID:22439932   PMID:22558309   PMID:22683505   PMID:22684007   PMID:22728334   PMID:22745667   PMID:22752602  
PMID:22810585   PMID:22939629   PMID:22973453   PMID:22974441   PMID:23065768   PMID:23166678   PMID:23215766   PMID:23221569   PMID:23246379   PMID:23251686   PMID:23275563   PMID:23301033  
PMID:23353701   PMID:23397142   PMID:23419831   PMID:23439647   PMID:23562842   PMID:23569237   PMID:23583404   PMID:23599027   PMID:23603894   PMID:23604317   PMID:23612964   PMID:23617393  
PMID:23643389   PMID:23676467   PMID:23810378   PMID:23810379   PMID:23810382   PMID:23853584   PMID:23980150   PMID:23980586   PMID:24073214   PMID:24113870   PMID:24165795   PMID:24189400  
PMID:24223153   PMID:24229379   PMID:24229420   PMID:24244431   PMID:24316008   PMID:24367658   PMID:24475931   PMID:24498420   PMID:24503895   PMID:24550137   PMID:24657164   PMID:24705354  
PMID:24728074   PMID:24819169   PMID:24830046   PMID:24886349   PMID:25036637   PMID:25091198   PMID:25098276   PMID:25104021   PMID:25114970   PMID:25133428   PMID:25187647   PMID:25236949  
PMID:25241761   PMID:25243493   PMID:25253337   PMID:25273559   PMID:25284480   PMID:25314071   PMID:25387834   PMID:25416956   PMID:25475121   PMID:25488983   PMID:25746038   PMID:25754093  
PMID:25754235   PMID:25814554   PMID:25846727   PMID:25921289   PMID:25939554   PMID:25962360   PMID:25979433   PMID:26037503   PMID:26122737   PMID:26125867   PMID:26186194   PMID:26210919  
PMID:26222500   PMID:26284543   PMID:26344197   PMID:26475863   PMID:26496610   PMID:26565021   PMID:26638075   PMID:26676464   PMID:26827886   PMID:26839216   PMID:26867574   PMID:26895380  
PMID:26972000   PMID:26972586   PMID:26988918   PMID:27016802   PMID:27025927   PMID:27068087   PMID:27070751   PMID:27076228   PMID:27107012   PMID:27135603   PMID:27157990   PMID:27173435  
PMID:27322059   PMID:27323778   PMID:27464702   PMID:27478041   PMID:27515006   PMID:27684187   PMID:27693481   PMID:27701424   PMID:27708159   PMID:27766312   PMID:27819673   PMID:27827315  
PMID:27880917   PMID:27927989   PMID:28104464   PMID:28124643   PMID:28167755   PMID:28169297   PMID:28205554   PMID:28205613   PMID:28319113   PMID:28351303   PMID:28380382   PMID:28381646  
PMID:28394344   PMID:28462395   PMID:28514442   PMID:28561224   PMID:28630349   PMID:28632845   PMID:28676490   PMID:28676499   PMID:28785028   PMID:29178053   PMID:29190819   PMID:29208003  
PMID:29212245   PMID:29395067   PMID:29494137   PMID:29507755   PMID:29513927   PMID:29526746   PMID:29568061   PMID:29636477   PMID:29662076   PMID:29677490   PMID:29724723   PMID:29740032  
PMID:29893513   PMID:29991678   PMID:30240640   PMID:30497511   PMID:30630630   PMID:30691859   PMID:30755611   PMID:30762338   PMID:30858483   PMID:30927924   PMID:30940648   PMID:31031754  
PMID:31059194   PMID:31091453   PMID:31209687   PMID:31401412   PMID:31608772   PMID:31617661   PMID:31635307   PMID:31660072   PMID:31678930   PMID:31753913   PMID:31828111   PMID:31831213  
PMID:31878075   PMID:31959764   PMID:32062451   PMID:32075097   PMID:32193760   PMID:32203420   PMID:32296183   PMID:32562373   PMID:32602265   PMID:32681842   PMID:32877691   PMID:32936972  
PMID:33221758   PMID:33957083   PMID:34079125   PMID:34145035  


Comparative Map Data
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl568,215,756 - 68,301,821 (+)EnsemblGRCh38hg38GRCh38
GRCh38568,215,737 - 68,301,821 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37567,511,584 - 67,597,649 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36567,558,218 - 67,633,405 (+)NCBINCBI36hg18NCBI36
Build 34567,622,250 - 67,633,403NCBI
Celera564,520,829 - 64,597,175 (+)NCBI
Cytogenetic Map5q13.1NCBI
HuRef564,468,818 - 64,555,164 (+)NCBIHuRef
CHM1_1567,511,846 - 67,597,747 (+)NCBICHM1_1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm3913101,817,269 - 101,904,725 (-)NCBIGRCm39mm39
GRCm39 Ensembl13101,817,071 - 101,904,725 (-)Ensembl
GRCm3813101,680,761 - 101,768,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13101,680,563 - 101,768,217 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713102,450,716 - 102,538,172 (-)NCBIGRCm37mm9NCBIm37
MGSCv3613102,781,018 - 102,792,904 (-)NCBImm8
Celera13105,285,857 - 105,373,612 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.92NCBI
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.2232,878,942 - 32,963,611 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl231,745,088 - 31,826,867 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0231,742,326 - 31,826,882 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0250,891,225 - 50,965,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4232,602,673 - 32,675,350 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1232,523,041 - 32,595,719 (-)NCBI
Celera228,878,690 - 28,948,863 (-)NCBICelera
RH 3.4 Map2111.0RGD
Cytogenetic Map2q12NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_0049554461,020,043 - 1,098,820 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554461,020,707 - 1,098,327 (-)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.1547,268,477 - 47,350,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl547,267,286 - 47,350,960 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0545,701,219 - 45,786,652 (-)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1253,447,802 - 53,527,563 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl253,448,286 - 53,524,970 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha250,408,936 - 50,489,628 (+)NCBI
ROS_Cfam_1.0253,951,256 - 54,032,010 (+)NCBI
UMICH_Zoey_3.1251,011,708 - 51,092,420 (+)NCBI
UNSW_CanFamBas_1.0251,791,194 - 51,871,863 (+)NCBI
UU_Cfam_GSD_1.0252,678,736 - 52,759,442 (+)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_024407213192,252,011 - 192,336,736 (-)NCBI
SpeTri2.0NW_0049364801,188,408 - 1,273,210 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1646,434,873 - 46,523,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11646,434,757 - 46,523,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21650,135,837 - 50,148,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.1464,321,296 - 64,406,188 (+)NCBI
ChlSab1.1 Ensembl464,321,078 - 64,406,519 (+)Ensembl
Vero_WHO_p1.0NW_02366604913,008,003 - 13,093,192 (+)NCBI
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_0046248151,290,106 - 1,376,961 (-)NCBI

Position Markers
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,528,609 - 67,528,851UniSTSGRCh37
Build 36567,564,365 - 67,564,607RGDNCBI36
Celera564,526,976 - 64,527,218RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,485,881 - 64,486,123UniSTS
GeneMap99-GB4 RH Map5341.34UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,594,284 - 67,594,358UniSTSGRCh37
Build 36567,630,040 - 67,630,114RGDNCBI36
Celera564,593,816 - 64,593,890RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,551,805 - 64,551,879UniSTS
GeneMap99-G3 RH Map52478.0UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,565,554 - 67,565,679UniSTSGRCh37
Build 36567,601,310 - 67,601,435RGDNCBI36
Celera564,564,005 - 64,564,130RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,523,065 - 64,523,190UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,534,621 - 67,534,779UniSTSGRCh37
Build 36567,570,377 - 67,570,535RGDNCBI36
Celera564,532,988 - 64,533,146RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,491,889 - 64,492,047UniSTS
GeneMap99-GB4 RH Map5341.34UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,595,695 - 67,595,753UniSTSGRCh37
GRCh371255,729,774 - 55,730,365UniSTSGRCh37
Build 36567,631,451 - 67,631,509RGDNCBI36
Celera1255,381,839 - 55,382,430UniSTS
Celera564,595,227 - 64,595,285RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,553,216 - 64,553,274UniSTS
HuRef1252,768,289 - 52,768,880UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,551,499 - 67,551,775UniSTSGRCh37
Build 36567,587,255 - 67,587,531RGDNCBI36
Celera564,549,861 - 64,550,137RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,508,765 - 64,509,041UniSTS
TNG Radiation Hybrid Map531115.0UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,593,455 - 67,593,623UniSTSGRCh37
Build 36567,629,211 - 67,629,379RGDNCBI36
Celera564,592,987 - 64,593,155RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,550,976 - 64,551,144UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,524,566 - 67,524,878UniSTSGRCh37
Build 36567,560,322 - 67,560,634RGDNCBI36
Celera564,522,933 - 64,523,245RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,481,839 - 64,482,151UniSTS
TNG Radiation Hybrid Map531164.0UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,521,671 - 67,522,461UniSTSGRCh37
Build 36567,557,427 - 67,558,217RGDNCBI36
Celera564,520,038 - 64,520,828RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,478,939 - 64,479,729UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,521,897 - 67,522,461UniSTSGRCh37
Build 36567,557,653 - 67,558,217RGDNCBI36
Celera564,520,264 - 64,520,828RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,479,165 - 64,479,729UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,594,199 - 67,594,321UniSTSGRCh37
Build 36567,629,955 - 67,630,077RGDNCBI36
Celera564,593,731 - 64,593,853RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,551,720 - 64,551,842UniSTS
GeneMap99-GB4 RH Map5341.12UniSTS
NCBI RH Map5313.3UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,593,556 - 67,594,476UniSTSGRCh37
Build 36567,629,312 - 67,630,232RGDNCBI36
Celera564,593,088 - 64,594,008RGD
HuRef564,551,077 - 64,551,997UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,594,865 - 67,595,023UniSTSGRCh37
Build 36567,630,621 - 67,630,779RGDNCBI36
Celera564,594,397 - 64,594,555RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,552,386 - 64,552,544UniSTS
GeneMap99-GB4 RH Map5342.01UniSTS
Whitehead-RH Map5246.8UniSTS
NCBI RH Map5313.3UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,595,812 - 67,595,936UniSTSGRCh37
Build 36567,631,568 - 67,631,692RGDNCBI36
Celera564,595,344 - 64,595,468RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,553,333 - 64,553,457UniSTS
Stanford-G3 RH Map52479.0UniSTS
GeneMap99-GB4 RH Map5340.34UniSTS
Whitehead-RH Map5246.0UniSTS
NCBI RH Map5310.8UniSTS
GeneMap99-G3 RH Map52474.0UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,585,455 - 67,585,579UniSTSGRCh37
Build 36567,621,211 - 67,621,335RGDNCBI36
Celera564,584,987 - 64,585,111RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,542,970 - 64,543,094UniSTS
GeneMap99-GB4 RH Map5339.79UniSTS
Whitehead-RH Map5246.2UniSTS
NCBI RH Map5313.3UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,594,912 - 67,595,038UniSTSGRCh37
Build 36567,630,668 - 67,630,794RGDNCBI36
Celera564,594,444 - 64,594,570RGD
Cytogenetic Map5q13.1UniSTS
HuRef564,552,433 - 64,552,559UniSTS
GeneMap99-GB4 RH Map5340.34UniSTS
Whitehead-RH Map5247.4UniSTS
NCBI RH Map5313.3UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37567,594,213 - 67,594,482UniSTSGRCh37
Build 36567,629,969 - 67,630,238RGDNCBI36
Celera564,593,745 - 64,594,014RGD
Cytogenetic Map5q13.1UniSTS
GeneMap99-GB4 RH Map5337.85UniSTS
NCBI RH Map5313.3UniSTS
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q13.1UniSTS
GeneMap99-GB4 RH Map5341.0UniSTS
Whitehead-RH Map5247.2UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR29Ahsa-miR-29a-3pMirtarbaseexternal_infoLuciferase reporter assay//Northern blot//qRT-PCR/Functional MTI20943204
MIR376A2hsa-miR-376a-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI22684007
MIR376A1hsa-miR-376a-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI22684007

Predicted Target Of
Summary Value
Count of predictions:8086
Count of miRNA genes:1165
Interacting mature miRNAs:1470
Transcripts:ENST00000274335, ENST00000320694, ENST00000336483, ENST00000396611, ENST00000517412, ENST00000517643, ENST00000517698, ENST00000518292, ENST00000518813, ENST00000519025, ENST00000520550, ENST00000520675, ENST00000521381, ENST00000521409, ENST00000521657, ENST00000522084, ENST00000523807, ENST00000523872
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
Medium 2238 2252 1431 554 1439 393 4070 1910 3310 266 1106 1448 166 1201 2692 3
Low 193 731 292 70 511 71 285 283 407 152 346 161 6 3 96 1 2
Below cutoff 3 3 1 1 1 2 12 1 6 3 3 1 1


Nucleotide Sequences
RefSeq Transcripts NG_012849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC016564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF279367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI124626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI334281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW630519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE888150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ723333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA427864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB216668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT003423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA487709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX133164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX133165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LS482401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M61906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000320694   ⟹   ENSP00000323512
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,288,368 - 68,298,583 (+)Ensembl
RefSeq Acc Id: ENST00000336483   ⟹   ENSP00000338554
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,290,637 - 68,298,583 (+)Ensembl
RefSeq Acc Id: ENST00000517412
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,226,437 - 68,273,681 (+)Ensembl
RefSeq Acc Id: ENST00000517643
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,217,466 - 68,226,542 (+)Ensembl
RefSeq Acc Id: ENST00000517698   ⟹   ENSP00000430424
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,290,682 - 68,295,485 (+)Ensembl
RefSeq Acc Id: ENST00000518292
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,290,672 - 68,293,392 (+)Ensembl
RefSeq Acc Id: ENST00000518813
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,290,800 - 68,298,605 (+)Ensembl
RefSeq Acc Id: ENST00000519025   ⟹   ENSP00000429156
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,292,486 - 68,294,658 (+)Ensembl
RefSeq Acc Id: ENST00000520550
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,292,683 - 68,295,743 (+)Ensembl
RefSeq Acc Id: ENST00000520675   ⟹   ENSP00000428566
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,239,898 - 68,280,582 (+)Ensembl
RefSeq Acc Id: ENST00000521381   ⟹   ENSP00000428056
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,215,756 - 68,301,821 (+)Ensembl
RefSeq Acc Id: ENST00000521409   ⟹   ENSP00000431058
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,288,695 - 68,294,612 (+)Ensembl
RefSeq Acc Id: ENST00000521657   ⟹   ENSP00000429277
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,215,776 - 68,298,753 (+)Ensembl
RefSeq Acc Id: ENST00000522084   ⟹   ENSP00000429766
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,280,307 - 68,293,199 (+)Ensembl
RefSeq Acc Id: ENST00000523807   ⟹   ENSP00000430126
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,280,240 - 68,293,346 (+)Ensembl
RefSeq Acc Id: ENST00000523872   ⟹   ENSP00000430098
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl568,292,568 - 68,298,756 (+)Ensembl
RefSeq Acc Id: NM_001242466   ⟹   NP_001229395
RefSeq Status: REVIEWED
Human AssemblyChrPosition (strand)Source
GRCh38568,292,577 - 68,301,821 (+)NCBI
GRCh37567,511,584 - 67,597,649 (+)ENTREZGENE
HuRef564,468,818 - 64,555,164 (+)ENTREZGENE
CHM1_1567,588,494 - 67,597,747 (+)NCBI
RefSeq Acc Id: NM_181504   ⟹   NP_852556
RefSeq Status: REVIEWED
Human AssemblyChrPosition (strand)Source
GRCh38568,290,664 - 68,301,821 (+)NCBI
GRCh37567,511,584 - 67,597,649 (+)ENTREZGENE
Build 36567,622,251 - 67,633,405 (+)NCBI Archive
HuRef564,468,818 - 64,555,164 (+)ENTREZGENE
CHM1_1567,586,565 - 67,597,747 (+)NCBI
RefSeq Acc Id: NM_181523   ⟹   NP_852664
RefSeq Status: REVIEWED
Human AssemblyChrPosition (strand)Source
GRCh38568,215,756 - 68,301,821 (+)NCBI
GRCh37567,511,584 - 67,597,649 (+)ENTREZGENE
Build 36567,558,218 - 67,633,405 (+)NCBI Archive
HuRef564,468,818 - 64,555,164 (+)ENTREZGENE
CHM1_1567,511,846 - 67,597,747 (+)NCBI
RefSeq Acc Id: NM_181524   ⟹   NP_852665
RefSeq Status: REVIEWED
Human AssemblyChrPosition (strand)Source
GRCh38568,288,519 - 68,301,821 (+)NCBI
GRCh37567,511,584 - 67,597,649 (+)ENTREZGENE
Build 36567,620,008 - 67,633,405 (+)NCBI Archive
HuRef564,468,818 - 64,555,164 (+)ENTREZGENE
CHM1_1567,584,350 - 67,597,747 (+)NCBI
RefSeq Acc Id: XM_005248542   ⟹   XP_005248599
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38568,215,737 - 68,301,821 (+)NCBI
GRCh37567,511,584 - 67,597,649 (+)NCBI
RefSeq Acc Id: XM_011543493   ⟹   XP_011541795
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38568,251,691 - 68,301,821 (+)NCBI
RefSeq Acc Id: XM_017009585   ⟹   XP_016865074
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38568,216,059 - 68,301,821 (+)NCBI
RefSeq Acc Id: XM_017009586   ⟹   XP_016865075
RefSeq Status:
Human AssemblyChrPosition (strand)Source
GRCh38568,239,411 - 68,301,821 (+)NCBI