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ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to low-density lipoprotein particle stimulus
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Accession:GO:0071404 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low-density lipoprotein particle stimulus.
Synonyms:broad_synonym: response to low density lipoprotein particle;   response to low-density lipoprotein particle stimulus
 alt_id: GO:0055098


show annotations for term's descendants           Sort by:
cellular response to low-density lipoprotein particle stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casr calcium-sensing receptor IEP oxidized LDL RGD PMID:22083546 RGD:7205681 NCBI chr11:64,235,251...64,304,811
Ensembl chr11:64,235,251...64,304,811 		JBrowse link
G Cd36 CD36 molecule involved_in ISS
ISO		 GO_REF:0000024
(PMID:23395392)		 UniProt
RGD		 PMID:23395392 GO_REF:0000024 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd81 Cd81 molecule involved_in ISS
ISO		 GO_REF:0000024
(PMID:23395392)		 UniProt
RGD		 PMID:23395392 GO_REF:0000024 NCBI chr 1:198,235,861...198,251,660
Ensembl chr 1:198,241,484...198,251,660 		JBrowse link
G Cd9 CD9 molecule involved_in ISS
ISO		 GO_REF:0000024
(PMID:23395392)		 UniProt
RGD		 PMID:23395392 GO_REF:0000024 NCBI chr 4:158,256,328...158,289,136
Ensembl chr 4:158,256,328...158,289,222 		JBrowse link
G Ces1d carboxylesterase 1D involved_in ISO (PMID:18762277) RGD PMID:18762277 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
G F3 coagulation factor III, tissue factor IEP RGD PMID:10190887 RGD:2313771 NCBI chr 2:209,827,061...209,838,666
Ensembl chr 2:209,826,959...209,838,668 		JBrowse link
G Fcer1g Fc epsilon receptor Ig involved_in ISS
ISO		 GO_REF:0000024
(PMID:23395392)		 UniProt
RGD		 PMID:23395392 GO_REF:0000024 NCBI chr13:83,649,447...83,654,248
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fgf21 fibroblast growth factor 21 IEP RGD PMID:22166524 RGD:10401877 NCBI chr 1:96,083,360...96,084,911
Ensembl chr 1:96,083,441...96,090,454 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IDA RGD PMID:16260 RGD:2302235 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:23395392)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:23395392 GO_REF:0000024 GO_REF:0000107 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23395392) RGD PMID:23395392 NCBI chr20:11,061,394...11,097,656
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in ISO
IEA		 (PMID:6299582)
GO_REF:0000107		 RGD
Ensembl		 PMID:6299582 GO_REF:0000107 NCBI chr 8:20,270,020...20,292,981
Ensembl chr 8:20,270,041...20,294,580 		JBrowse link
G Mfn2 mitofusin 2 IEP RGD PMID:26062420 RGD:13204747 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Mir135a microRNA 135a involved_in ISO RNAcentral:URS0000CCE0E6_9606 (PMID:31545249) RGD PMID:31545249 NCBI chr 7:26,611,990...26,612,089
Ensembl chr 7:26,611,990...26,612,089 		JBrowse link
G Mir92a1 microRNA 92a-1 involved_in ISO (PMID:24255059) RGD PMID:24255059 NCBI chr15:92,181,336...92,181,413
Ensembl chr15:92,181,336...92,181,413 		JBrowse link
G Mir92a2 microRNA 92a-2 involved_in ISO (PMID:24255059) RGD PMID:24255059 NCBI chr  X:132,421,942...132,422,033
Ensembl chr  X:132,421,942...132,422,033 		JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:19554388 RGD:2325827 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:29161690 RGD:13504739 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO (PMID:10787428) RGD PMID:10787428 NCBI chr18:3,379,482...3,425,100
Ensembl chr18:3,379,482...3,425,049 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:9568716) RGD PMID:9568716 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Serpine1 serpin family E member 1 IEP RGD PMID:11057874 RGD:8547812 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in ISO (PMID:24255059) RGD PMID:24255059 NCBI chr 6:7,481,039...7,512,644
Ensembl chr 6:7,481,095...7,514,834 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO
IEA		 (PMID:15358760)
GO_REF:0000107		 RGD
Ensembl		 PMID:15358760 GO_REF:0000107 NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23395392)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23395392 GO_REF:0000024 GO_REF:0000107 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:32141990) RGD PMID:32141990 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
cellular response to oxidised low-density lipoprotein particle stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen-dependent TFPI-regulating protein involved_in ISO (PMID:28341552) RGD PMID:28341552 NCBI chr17:22,907,758...22,993,834
Ensembl chr17:22,930,740...22,993,826 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA		 (PMID:28341552)
GO_REF:0000107		 RGD
Ensembl		 PMID:28341552 GO_REF:0000107 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Cd36 CD36 molecule involved_in ISO
IEA		 (PMID:27607416)
GO_REF:0000107		 RGD
Ensembl		 PMID:27607416 GO_REF:0000107 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd68 Cd68 molecule involved_in ISO (PMID:16157452) RGD PMID:16157452 NCBI chr10:54,381,814...54,383,693
Ensembl chr10:54,381,815...54,383,697 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO (PMID:28341552) RGD PMID:28341552 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Mir146a microRNA 146a involved_in ISO (PMID:21329689) RGD PMID:21329689 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:29653364) RGD PMID:29653364 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor involved_in ISO (PMID:20037584) RGD PMID:20037584 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856877 (PMID:20352118)		 Ensembl
RGD		 PMID:20352118 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 involved_in ISO (PMID:20037584) RGD PMID:20037584 NCBI chr 9:1,102,559...1,111,023
Ensembl chr 9:1,102,366...1,123,147 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20037584)
UniProtKB:Q9Y2C9 (PMID:20037584)		 Ensembl
RGD		 PMID:20037584 GO_REF:0000107 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tlr6 toll-like receptor 6 involved_in ISO (PMID:20037584)
UniProtKB:O00206 (PMID:20037584)		 RGD PMID:20037584 NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:31902528) RGD PMID:31902528 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
low-density lipoprotein particle mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in ISO (PMID:26005850) RGD PMID:26005850 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Cd36 CD36 molecule involved_in IEA
ISO		 GO_REF:0000107
(PMID:20978343)		 Ensembl
RGD		 PMID:20978343 GO_REF:0000107 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cdh13 cadherin 13 involved_in ISO (PMID:16013438) RGD PMID:16013438 NCBI chr19:46,349,562...47,387,462
Ensembl chr19:46,349,430...47,387,459 		JBrowse link
G Lpl lipoprotein lipase involved_in ISO
IEA		 (PMID:25149060)
GO_REF:0000107		 RGD
Ensembl		 PMID:25149060 GO_REF:0000107 NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20075
    response to stimulus 10793
      response to endogenous stimulus 2030
        response to lipoprotein particle 41
          cellular response to low-density lipoprotein particle stimulus 40
            cellular response to oxidised low-density lipoprotein particle stimulus 13
            low-density lipoprotein particle mediated signaling 4
Path 2
Term Annotations click to browse term
  biological_process 20075
    response to stimulus 10793
      response to chemical 5899
        response to nitrogen compound 1550
          response to lipoprotein particle 41
            cellular response to low-density lipoprotein particle stimulus 40
              cellular response to oxidised low-density lipoprotein particle stimulus 13
              low-density lipoprotein particle mediated signaling 4
paths to the root