GLUCO52_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GLUCO52_H (Glucose level QTL 52 (human)) Homo sapiens

Symbol: GLUCO52_H
Name: Glucose level QTL 52 (human)
RGD ID: 2314551
Trait: Glucose level
LOD Score: 1.4
P Value: Not Available
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381077,605,006 - 103,605,006RGD_MAPPER_PIPELINEGRCh38
GRCh371079,364,763 - 105,364,763RGD_MAPPER_PIPELINEGRCh37
Population Stats: HERITAGE Study
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GLUCO52_HHumanGlucose intolerance  IDA 2313873 RGD 

#
Reference Title
Reference Citation
1. Genome-wide linkage scans for prediabetes phenotypes in response to 20 weeks of endurance exercise training in non-diabetic whites and blacks: the HERITAGE Family Study. An P, etal., Diabetologia. 2005 Jun;48(6):1142-9. Epub 2005 May 3.


1 to 20 of 1997 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731981KCNMA1potassium calcium-activated channel subfamily M alpha 1107686960277637808Human
151674554LOC124902465uncharacterized LOC124902465107761975077621037Human
329844962LOC130004140ATAC-STARR-seq lymphoblastoid silent region 2517107764967077649769Human
155227609LOC126860968MED14-independent group 3 enhancer GRCh37_chr10:79418700-79419899107765894277660141Human
329342163LOC129662751ReSE screen-validated silencer GRCh37_chr10:79432857-79433055107767309977673297Human
38657187LOC105378372uncharacterized LOC105378372107770243477710688Human
329833981LOC130004141ATAC-STARR-seq lymphoblastoid active region 3610107770986377709922Human
329829646LOC130004142ATAC-STARR-seq lymphoblastoid active region 3611107771029377710482Human
329340769LOC129662752ReSE screen-validated silencer GRCh37_chr10:79472357-79472588107771259977712830Human
38608357LOC399783zinc finger protein 532 pseudogene107773077277734971Human
7250308RBBP6P1RBBP6 pseudogene 1107773817377739209Human
155768400LOC127818436H3K4me1 hESC enhancer GRCh37_chr10:79530491-79530990107777073377771232Human
10399322RNU6-1266PRNA, U6 small nuclear 1266, pseudogene107777695277777055Human
2289873IMPDH1P5inosine monophosphate dehydrogenase 1 pseudogene 5107777959577781923Human
1318707DLG5discs large MAGUK scaffold protein 5107779079177940736Human
155755626LOC127818437H3K27ac hESC enhancer GRCh37_chr10:79568517-79569016107780875977809258Human
155756987LOC127818438H3K27ac hESC enhancer GRCh37_chr10:79591709-79592210107783195177832452Human
155763480LOC127818439H3K27ac hESC enhancer GRCh37_chr10:79592211-79592710107783245377832952Human
329341485LOC129662753ReSE screen-validated silencer GRCh37_chr10:79596052-79596324107783629477836566Human
155768371LOC127818440H3K4me1 hESC enhancer GRCh37_chr10:79596746-79597366107783698877837608Human

1 to 20 of 1997 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
1858173D10S1242144109060493590605078Humanregion

Peak: (D10S1242)
Human AssemblyChrPosition (strand)Source
GRCh381090,604,935 - 90,605,078RGD
GRCh371092,364,692 - 92,364,835UniSTS
Build 361092,354,672 - 92,354,815RGD
Celera1086,111,033 - 86,111,172RGD
Cytogenetic Map10q23.3UniSTS
HuRef1085,997,603 - 85,997,742UniSTS
TNG Radiation Hybrid Map10 UniSTS
Stanford-G3 RH Map10 UniSTS
Whitehead-RH Map10 UniSTS
Whitehead-YAC Contig Map10 UniSTS
NCBI RH Map10 UniSTS


1 to 10 of 6048 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407296070GWAS945046_Htotal cholesterol measurement QTL GWAS945046 (human)2e-13total cholesterol measurement109427892994278930Human
596968340GWAS1087859_Hfunctional brain measurement QTL GWAS1087859 (human)2e-27functional brain measurement109427892994278930Human
597312409GWAS1408483_Hcortical thickness QTL GWAS1408483 (human)2e-14cortical thickness109425603694256037Human
597607325GWAS1664185_Hprostate carcinoma QTL GWAS1664185 (human)8e-27prostate carcinoma10102662289102662290Human
597033874GWAS1129948_Hsensory perception of bitter taste QTL GWAS1129948 (human)0.000008sensory perception of bitter taste108052017180520172Human
597099411GWAS1195485_Htype 2 diabetes mellitus QTL GWAS1195485 (human)8e-43type 2 diabetes mellitus109267591692675917Human
596968337GWAS1087856_Hfunctional brain measurement QTL GWAS1087856 (human)2e-37functional brain measurement109427892994278930Human
597099410GWAS1195484_Htype 2 diabetes mellitus QTL GWAS1195484 (human)5e-08type 2 diabetes mellitus108793953387939534Human
596968336GWAS1087855_Hfunctional brain measurement QTL GWAS1087855 (human)3e-56functional brain measurement109427892994278930Human
597099409GWAS1195483_Htype 2 diabetes mellitus QTL GWAS1195483 (human)1e-14type 2 diabetes mellitus107918408479184085Human

1 to 10 of 6048 rows


Note Type Note Reference
qtl_map Chromosome 10q23.2, 92.029 Mb 2313873
qtl_population HERITAGE Study 2313873
qtl_population_details Sedentary subjects in good health able to complete a 20 week exercise training program, parents 65 years or less, offspring 17 years or older, 90 Black nuclear families 2313873
qtl_statistics_details Software used: MAPMAKER/SIBS and SEGPATH, multipoint linkage analysis using variance components model 2313873