NOLC1 (nucleolar and coiled-body phosphoprotein 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: NOLC1 (nucleolar and coiled-body phosphoprotein 1) Homo sapiens
Analyze
Symbol: NOLC1
Name: nucleolar and coiled-body phosphoprotein 1
RGD ID: 1354376
HGNC Page HGNC:15608
Description: Enables molecular function inhibitor activity; protein heterodimerization activity; and protein-macromolecule adaptor activity. Involved in neural crest cell development; neural crest formation; and regulation of translation. Acts upstream of or within axonogenesis and regulation of synaptic plasticity. Located in fibrillar center.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 140 kDa nucleolar phosphoprotein; HCV NS5A trans-regulated protein 13; HCV NS5A-transactivated protein 13; hepatitis C virus NS5A-transactivated protein 13; KIAA0035; NOPP130; NOPP140; NS5ATP13; nucleolar 130 kDa protein; nucleolar and coiled-body phosphprotein 1; nucleolar phosphoprotein p130; nucleolar protein p130; P130; Srp40
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: AC110053.1   NOLC1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,152,389 - 102,163,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,152,176 - 102,163,871 (+)EnsemblGRCh38hg38GRCh38
GRCh3710103,912,146 - 103,923,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,901,923 - 103,913,617 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410103,902,106 - 103,912,347NCBI
Celera1097,652,854 - 97,664,548 (+)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,544,003 - 97,555,697 (+)NCBIHuRef
CHM1_110104,195,424 - 104,207,114 (+)NCBICHM1_1
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (EXP)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-phenylbutyric acid  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (EXP)
afimoxifene  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
alpha-phellandrene  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
arsenous acid  (EXP)
ATP  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) adipate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (ISO)
butyric acid  (ISO)
caffeine  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clofibric acid  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
cordycepin  (ISO)
coumarin  (EXP)
coumestrol  (EXP)
cyclosporin A  (EXP)
DDE  (EXP)
deguelin  (EXP)
deoxynivalenol  (EXP)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (EXP)
diisononyl phthalate  (ISO)
dimethylarsinous acid  (EXP)
dioxygen  (ISO)
diquat  (ISO)
doxorubicin  (EXP)
elemental selenium  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
fenvalerate  (ISO)
fipronil  (ISO)
flutamide  (ISO)
FR900359  (EXP)
glyphosate  (ISO)
hexadecanoic acid  (EXP)
hydrogen peroxide  (EXP)
ivermectin  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
menadione  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
phorone  (ISO)
pirinixic acid  (ISO)
piroxicam  (EXP)
potassium chromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (EXP,ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
SB 431542  (EXP)
selenium atom  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
sunitinib  (EXP)
T-2 toxin  (EXP)
temozolomide  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
Tributyltin oxide  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP,ISO)
Triptolide  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7584026   PMID:7584028   PMID:7657714   PMID:8125298   PMID:8630004   PMID:8657117   PMID:8889548   PMID:8972203   PMID:9013635   PMID:9016786   PMID:9553145   PMID:9679133  
PMID:10567578   PMID:11571651   PMID:12167624   PMID:12446766   PMID:12477932   PMID:12777385   PMID:14702039   PMID:15144186   PMID:15146197   PMID:15161933   PMID:15302935   PMID:15324660  
PMID:15385968   PMID:16341674   PMID:16344560   PMID:16385451   PMID:16964243   PMID:17001309   PMID:17038328   PMID:17081983   PMID:17342744   PMID:17353931   PMID:17531812   PMID:17620599  
PMID:18029348   PMID:18253863   PMID:18790693   PMID:19129172   PMID:19381672   PMID:19541936   PMID:19608861   PMID:20360068   PMID:20467437   PMID:21244100   PMID:21264300   PMID:21266110  
PMID:21555454   PMID:21832049   PMID:21873635   PMID:22190034   PMID:22586326   PMID:22658674   PMID:22681889   PMID:22751105   PMID:22863883   PMID:22906532   PMID:22939629   PMID:22952844  
PMID:23188192   PMID:23398456   PMID:23455922   PMID:23970161   PMID:24124579   PMID:24218616   PMID:24457600   PMID:24550385   PMID:24591637   PMID:24711643   PMID:25205458   PMID:25416818  
PMID:25645906   PMID:25852190   PMID:25963833   PMID:26167880   PMID:26186194   PMID:26344197   PMID:26399832   PMID:26496610   PMID:26638075   PMID:26673895   PMID:26725010   PMID:26752685  
PMID:26831064   PMID:26839216   PMID:27129302   PMID:27173435   PMID:27297113   PMID:27634302   PMID:27684187   PMID:28378594   PMID:28514442   PMID:28515276   PMID:28524877   PMID:28533407  
PMID:28977666   PMID:29089422   PMID:29128334   PMID:29298432   PMID:29467282   PMID:29507755   PMID:29509190   PMID:29568061   PMID:29725012   PMID:29911972   PMID:29999490   PMID:30021884  
PMID:30033366   PMID:30404004   PMID:30413534   PMID:30463901   PMID:30505321   PMID:30554943   PMID:30804502   PMID:30833792   PMID:30884312   PMID:30890647   PMID:30948266   PMID:30997501  
PMID:31006538   PMID:31076518   PMID:31091453   PMID:31180492   PMID:31239290   PMID:31332168   PMID:31363146   PMID:31405213   PMID:31586073   PMID:31664887   PMID:31753913   PMID:31754246  
PMID:31980649   PMID:32176628   PMID:32416067   PMID:32513696   PMID:32521226   PMID:32538781   PMID:32552912   PMID:32687490   PMID:32707033   PMID:32744500   PMID:32780723   PMID:32877691  
PMID:32971831   PMID:32994395   PMID:33106477   PMID:33301849   PMID:33323972   PMID:33729478   PMID:33916271   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34091597   PMID:34185411  
PMID:34189442   PMID:34349018   PMID:34373451   PMID:34537242   PMID:34650049   PMID:34709727   PMID:34901782   PMID:35013218   PMID:35140242   PMID:35271311   PMID:35439318   PMID:35563538  
PMID:35575683   PMID:35583604   PMID:35819319   PMID:35831314   PMID:35844135   PMID:35915203   PMID:35944360   PMID:36114006   PMID:36199071   PMID:36215168   PMID:36225252   PMID:36265288  
PMID:36273042   PMID:36373674   PMID:36424410   PMID:36526897   PMID:36574265   PMID:36736316   PMID:36861887   PMID:36880596   PMID:36912080   PMID:36931259   PMID:37296317   PMID:37616343  
PMID:37670166   PMID:37827155   PMID:37939867   PMID:38062753   PMID:38113892   PMID:38172120   PMID:38270169   PMID:38697112   PMID:39238192  


Genomics

Comparative Map Data
NOLC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,152,389 - 102,163,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,152,176 - 102,163,871 (+)EnsemblGRCh38hg38GRCh38
GRCh3710103,912,146 - 103,923,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,901,923 - 103,913,617 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410103,902,106 - 103,912,347NCBI
Celera1097,652,854 - 97,664,548 (+)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,544,003 - 97,555,697 (+)NCBIHuRef
CHM1_110104,195,424 - 104,207,114 (+)NCBICHM1_1
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBIT2T-CHM13v2.0
Nolc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,064,286 - 46,073,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,064,302 - 46,073,969 (+)EnsemblGRCm39 Ensembl
GRCm381946,075,847 - 46,085,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,075,863 - 46,085,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv371946,150,353 - 46,160,020 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,129,174 - 46,138,841 (+)NCBIMGSCv36mm8
Celera1946,839,129 - 46,848,811 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.75NCBI
Nolc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81254,870,195 - 254,881,070 (+)NCBIGRCr8
mRatBN7.21244,921,275 - 244,932,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1244,921,377 - 244,932,088 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,065,796 - 253,076,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01259,760,508 - 259,771,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,412,316 - 252,423,034 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01265,829,055 - 265,839,819 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1265,829,108 - 265,839,818 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,260,236 - 273,270,983 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,297,417 - 251,308,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,557,985 - 251,568,696 (+)NCBI
Celera1240,727,350 - 240,738,060 (+)NCBICelera
Cytogenetic Map1q54NCBI
Nolc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,188,680 - 8,197,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,187,078 - 8,197,952 (-)NCBIChiLan1.0ChiLan1.0
NOLC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,040,231 - 114,051,938 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,044,942 - 114,057,259 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01098,756,307 - 98,767,917 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,223,720 - 102,235,360 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,223,956 - 102,233,760 (+)Ensemblpanpan1.1panPan2
NOLC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,686,001 - 14,699,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,686,090 - 14,697,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2814,858,076 - 14,871,155 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,159,052 - 15,172,143 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,159,120 - 15,172,136 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,704,328 - 14,717,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,743,673 - 14,756,755 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02814,876,281 - 14,889,618 (+)NCBIUU_Cfam_GSD_1.0
Nolc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,073,316 - 32,083,450 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,676,314 - 3,686,763 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,676,540 - 3,686,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOLC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,154,819 - 113,166,906 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,154,619 - 113,166,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,007,626 - 123,019,786 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOLC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,185,755 - 95,194,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,185,480 - 95,195,136 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,284,098 - 56,296,047 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nolc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,613,234 - 1,620,792 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,613,318 - 1,620,592 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOLC1
63 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q23.33-25.3(chr10:95112607-116776637)x3 copy number gain See cases [RCV000050747] Chr10:95112607..116776637 [GRCh38]
Chr10:96872364..118383651 [GRCh37]
Chr10:96862354..118526138 [NCBI36]
Chr10:10q23.33-25.3		 pathogenic
GRCh38/hg38 10q23.31-26.3(chr10:91048545-133620674)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]|See cases [RCV000053560] Chr10:91048545..133620674 [GRCh38]
Chr10:92808302..135434178 [GRCh37]
Chr10:92798282..135284168 [NCBI36]
Chr10:10q23.31-26.3		 pathogenic
GRCh38/hg38 10q24.31-26.3(chr10:100194215-132432797)x3 copy number gain See cases [RCV000053564] Chr10:100194215..132432797 [GRCh38]
Chr10:101953972..134246301 [GRCh37]
Chr10:101943962..134096291 [NCBI36]
Chr10:10q24.31-26.3		 pathogenic
GRCh38/hg38 10q24.31-26.3(chr10:100600492-133622588)x3 copy number gain See cases [RCV000137747] Chr10:100600492..133622588 [GRCh38]
Chr10:102360249..135436092 [GRCh37]
Chr10:102350239..135286082 [NCBI36]
Chr10:10q24.31-26.3		 pathogenic
GRCh37/hg19 10q24.32-26.3(chr10:103288313-135512075)x3 copy number gain See cases [RCV000240457] Chr10:103288313..135512075 [GRCh37]
Chr10:10q24.32-26.3		 pathogenic
GRCh37/hg19 10q24.2-26.3(chr10:100780957-135427143)x3 copy number gain See cases [RCV000446733] Chr10:100780957..135427143 [GRCh37]
Chr10:10q24.2-26.3		 pathogenic
GRCh37/hg19 10q23.1-25.1(chr10:85557432-105804295)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000431909] Chr10:85557432..105804295 [GRCh37]
Chr10:10q23.1-25.1		 pathogenic|drug response
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10q23.32-26.3(chr10:93283493-135427143)x3 copy number gain See cases [RCV000510972] Chr10:93283493..135427143 [GRCh37]
Chr10:10q23.32-26.3		 pathogenic
GRCh37/hg19 10q11.21-26.3(chr10:42347406-135534747)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626438] Chr10:42347406..135534747 [GRCh37]
Chr10:10q11.21-26.3		 drug response
NM_004741.5(NOLC1):c.785G>A (p.Arg262Gln) single nucleotide variant not specified [RCV004305616] Chr10:102159494 [GRCh38]
Chr10:103919251 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.1457C>G (p.Ser486Cys) single nucleotide variant not specified [RCV004293314] Chr10:102160809 [GRCh38]
Chr10:103920566 [GRCh37]
Chr10:10q24.32		 uncertain significance
GRCh37/hg19 10q23.33-26.3(chr10:94346520-135427143)x3 copy number gain not provided [RCV000683291] Chr10:94346520..135427143 [GRCh37]
Chr10:10q23.33-26.3		 pathogenic
GRCh37/hg19 10q24.32-24.33(chr10:103891057-105339973)x1 copy number loss not provided [RCV000683260] Chr10:103891057..105339973 [GRCh37]
Chr10:10q24.32-24.33		 likely pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
NM_004741.5(NOLC1):c.42G>A (p.Leu14=) single nucleotide variant not provided [RCV000966388] Chr10:102152452 [GRCh38]
Chr10:103912209 [GRCh37]
Chr10:10q24.32		 benign
NM_004741.5(NOLC1):c.1570G>A (p.Asp524Asn) single nucleotide variant not provided [RCV000903436] Chr10:102160922 [GRCh38]
Chr10:103920679 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.1849-9C>T single nucleotide variant not provided [RCV000906786] Chr10:102161824 [GRCh38]
Chr10:103921581 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.1911A>G (p.Ser637=) single nucleotide variant not provided [RCV000965151] Chr10:102161895 [GRCh38]
Chr10:103921652 [GRCh37]
Chr10:10q24.32		 benign
NM_004741.5(NOLC1):c.1235G>T (p.Gly412Val) single nucleotide variant not provided [RCV000952683] Chr10:102160587 [GRCh38]
Chr10:103920344 [GRCh37]
Chr10:10q24.32		 benign
NM_004741.5(NOLC1):c.1099+10A>G single nucleotide variant not provided [RCV000888835] Chr10:102160353 [GRCh38]
Chr10:103920110 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.1008G>A (p.Glu336=) single nucleotide variant not provided [RCV000897394] Chr10:102160252 [GRCh38]
Chr10:103920009 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.250T>A (p.Ser84Thr) single nucleotide variant not specified [RCV004281618] Chr10:102157262 [GRCh38]
Chr10:103917019 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1960T>C (p.Trp654Arg) single nucleotide variant not specified [RCV004306063] Chr10:102162129 [GRCh38]
Chr10:103921886 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1845G>A (p.Lys615=) single nucleotide variant not provided [RCV000974256] Chr10:102161659 [GRCh38]
Chr10:103921416 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.945G>A (p.Lys315=) single nucleotide variant not provided [RCV000885035] Chr10:102159981 [GRCh38]
Chr10:103919738 [GRCh37]
Chr10:10q24.32		 benign
NM_004741.5(NOLC1):c.1739C>T (p.Ser580Leu) single nucleotide variant not provided [RCV000889061] Chr10:102161091 [GRCh38]
Chr10:103920848 [GRCh37]
Chr10:10q24.32		 benign
NM_004741.5(NOLC1):c.2048G>A (p.Arg683Gln) single nucleotide variant not provided [RCV000957893] Chr10:102162217 [GRCh38]
Chr10:103921974 [GRCh37]
Chr10:10q24.32		 likely benign
GRCh37/hg19 10q24.32(chr10:103582453-103931269)x3 copy number gain not provided [RCV001258462] Chr10:103582453..103931269 [GRCh37]
Chr10:10q24.32		 uncertain significance
NC_000010.10:g.(?_99344461)_(105992004_?)dup duplication not provided [RCV003107322] Chr10:99344461..105992004 [GRCh37]
Chr10:10q24.2-25.1		 uncertain significance
NM_004741.5(NOLC1):c.959A>G (p.Glu320Gly) single nucleotide variant not specified [RCV004288426] Chr10:102159995 [GRCh38]
Chr10:103919752 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1951G>T (p.Ala651Ser) single nucleotide variant not specified [RCV004212714] Chr10:102162120 [GRCh38]
Chr10:103921877 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.164G>C (p.Ser55Thr) single nucleotide variant not specified [RCV004164858] Chr10:102157062 [GRCh38]
Chr10:103916819 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1861G>T (p.Ala621Ser) single nucleotide variant not specified [RCV004086623] Chr10:102161845 [GRCh38]
Chr10:103921602 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1718C>T (p.Ala573Val) single nucleotide variant not specified [RCV004204477] Chr10:102161070 [GRCh38]
Chr10:103920827 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1610G>T (p.Gly537Val) single nucleotide variant not specified [RCV004211741] Chr10:102160962 [GRCh38]
Chr10:103920719 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1013A>G (p.Lys338Arg) single nucleotide variant not specified [RCV004117488] Chr10:102160257 [GRCh38]
Chr10:103920014 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.245C>G (p.Ala82Gly) single nucleotide variant not specified [RCV004238742] Chr10:102157257 [GRCh38]
Chr10:103917014 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.2012G>A (p.Arg671Gln) single nucleotide variant not specified [RCV004186590] Chr10:102162181 [GRCh38]
Chr10:103921938 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.2041A>G (p.Ser681Gly) single nucleotide variant not specified [RCV004091090] Chr10:102162210 [GRCh38]
Chr10:103921967 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.731C>G (p.Pro244Arg) single nucleotide variant not specified [RCV004094716] Chr10:102159440 [GRCh38]
Chr10:103919197 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1615C>A (p.Pro539Thr) single nucleotide variant not specified [RCV004211742] Chr10:102160967 [GRCh38]
Chr10:103920724 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.889G>C (p.Ala297Pro) single nucleotide variant not specified [RCV004203668] Chr10:102159925 [GRCh38]
Chr10:103919682 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.470C>T (p.Ala157Val) single nucleotide variant not specified [RCV004172527] Chr10:102158077 [GRCh38]
Chr10:103917834 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.2059A>G (p.Ile687Val) single nucleotide variant not specified [RCV004208140] Chr10:102162228 [GRCh38]
Chr10:103921985 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.772A>G (p.Thr258Ala) single nucleotide variant not specified [RCV004174768] Chr10:102159481 [GRCh38]
Chr10:103919238 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.23G>A (p.Arg8His) single nucleotide variant not specified [RCV004114520] Chr10:102152433 [GRCh38]
Chr10:103912190 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.2003A>G (p.Lys668Arg) single nucleotide variant not specified [RCV004098681] Chr10:102162172 [GRCh38]
Chr10:103921929 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.338G>A (p.Gly113Asp) single nucleotide variant not specified [RCV004271945] Chr10:102157452 [GRCh38]
Chr10:103917209 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.31C>G (p.Pro11Ala) single nucleotide variant not specified [RCV004284795] Chr10:102152441 [GRCh38]
Chr10:103912198 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.401A>G (p.Asp134Gly) single nucleotide variant not specified [RCV004262889] Chr10:102157515 [GRCh38]
Chr10:103917272 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1369C>G (p.Leu457Val) single nucleotide variant not specified [RCV004276556] Chr10:102160721 [GRCh38]
Chr10:103920478 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.137A>G (p.Asn46Ser) single nucleotide variant not specified [RCV004257824] Chr10:102157035 [GRCh38]
Chr10:103916792 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1855A>G (p.Lys619Glu) single nucleotide variant not specified [RCV004272106] Chr10:102161839 [GRCh38]
Chr10:103921596 [GRCh37]
Chr10:10q24.32		 uncertain significance
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3		 pathogenic
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3		 pathogenic
NM_004741.5(NOLC1):c.1538A>G (p.Lys513Arg) single nucleotide variant not specified [RCV004354082] Chr10:102160890 [GRCh38]
Chr10:103920647 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.337G>A (p.Gly113Ser) single nucleotide variant not specified [RCV004363197] Chr10:102157451 [GRCh38]
Chr10:103917208 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.1937C>A (p.Ala646Asp) single nucleotide variant not specified [RCV004366001] Chr10:102161921 [GRCh38]
Chr10:103921678 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1781A>T (p.Glu594Val) single nucleotide variant not specified [RCV004346260] Chr10:102161595 [GRCh38]
Chr10:103921352 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.657T>C (p.Ser219=) single nucleotide variant not provided [RCV003422833] Chr10:102159242 [GRCh38]
Chr10:103918999 [GRCh37]
Chr10:10q24.32		 likely benign
GRCh37/hg19 10q23.33-26.3(chr10:95078198-135427143)x3 copy number gain not specified [RCV003986893] Chr10:95078198..135427143 [GRCh37]
Chr10:10q23.33-26.3		 pathogenic
NM_004741.5(NOLC1):c.1300G>A (p.Glu434Lys) single nucleotide variant not specified [RCV004487967] Chr10:102160652 [GRCh38]
Chr10:103920409 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1666A>G (p.Asn556Asp) single nucleotide variant not specified [RCV004487968] Chr10:102161018 [GRCh38]
Chr10:103920775 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1697A>G (p.Glu566Gly) single nucleotide variant not specified [RCV004487969] Chr10:102161049 [GRCh38]
Chr10:103920806 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1889A>G (p.Glu630Gly) single nucleotide variant not specified [RCV004487971] Chr10:102161873 [GRCh38]
Chr10:103921630 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.2062T>A (p.Ser688Thr) single nucleotide variant not specified [RCV004487972] Chr10:102162231 [GRCh38]
Chr10:103921988 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.415G>C (p.Glu139Gln) single nucleotide variant not specified [RCV004487974] Chr10:102157529 [GRCh38]
Chr10:103917286 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.561A>G (p.Ile187Met) single nucleotide variant not specified [RCV004487975] Chr10:102158168 [GRCh38]
Chr10:103917925 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.565C>T (p.Pro189Ser) single nucleotide variant not specified [RCV004487977] Chr10:102158172 [GRCh38]
Chr10:103917929 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.614C>G (p.Ala205Gly) single nucleotide variant not specified [RCV004487978] Chr10:102159199 [GRCh38]
Chr10:103918956 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.565C>A (p.Pro189Thr) single nucleotide variant not specified [RCV004487976] Chr10:102158172 [GRCh38]
Chr10:103917929 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1213G>A (p.Ala405Thr) single nucleotide variant not specified [RCV004487966] Chr10:102160565 [GRCh38]
Chr10:103920322 [GRCh37]
Chr10:10q24.32		 likely benign
NM_004741.5(NOLC1):c.233C>G (p.Ala78Gly) single nucleotide variant not specified [RCV004487973] Chr10:102157245 [GRCh38]
Chr10:103917002 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.881C>T (p.Pro294Leu) single nucleotide variant not specified [RCV004487983] Chr10:102159917 [GRCh38]
Chr10:103919674 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1879A>G (p.Arg627Gly) single nucleotide variant not specified [RCV004487970] Chr10:102161863 [GRCh38]
Chr10:103921620 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.749C>T (p.Ala250Val) single nucleotide variant not specified [RCV004487979] Chr10:102159458 [GRCh38]
Chr10:103919215 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.757C>G (p.Pro253Ala) single nucleotide variant not specified [RCV004487980] Chr10:102159466 [GRCh38]
Chr10:103919223 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.767C>T (p.Ala256Val) single nucleotide variant not specified [RCV004487981] Chr10:102159476 [GRCh38]
Chr10:103919233 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1046C>G (p.Thr349Ser) single nucleotide variant not specified [RCV004487965] Chr10:102160290 [GRCh38]
Chr10:103920047 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.778C>G (p.Pro260Ala) single nucleotide variant not specified [RCV004487982] Chr10:102159487 [GRCh38]
Chr10:103919244 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1756C>T (p.Arg586Trp) single nucleotide variant not specified [RCV004643911] Chr10:102161570 [GRCh38]
Chr10:103921327 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.20G>T (p.Arg7Leu) single nucleotide variant not specified [RCV004643912] Chr10:102152430 [GRCh38]
Chr10:103912187 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1498G>T (p.Gly500Cys) single nucleotide variant not specified [RCV004647490] Chr10:102160850 [GRCh38]
Chr10:103920607 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.346C>T (p.Pro116Ser) single nucleotide variant not specified [RCV004647491] Chr10:102157460 [GRCh38]
Chr10:103917217 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1694A>T (p.Glu565Val) single nucleotide variant not specified [RCV004647493] Chr10:102161046 [GRCh38]
Chr10:103920803 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.16A>T (p.Ile6Phe) single nucleotide variant not specified [RCV004647494] Chr10:102152426 [GRCh38]
Chr10:103912183 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1465G>A (p.Ala489Thr) single nucleotide variant not specified [RCV004647495] Chr10:102160817 [GRCh38]
Chr10:103920574 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.2036G>A (p.Arg679Gln) single nucleotide variant not specified [RCV004647489] Chr10:102162205 [GRCh38]
Chr10:103921962 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1723G>A (p.Val575Met) single nucleotide variant not specified [RCV004643910] Chr10:102161075 [GRCh38]
Chr10:103920832 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.1480C>A (p.Pro494Thr) single nucleotide variant not specified [RCV004647496] Chr10:102160832 [GRCh38]
Chr10:103920589 [GRCh37]
Chr10:10q24.32		 uncertain significance
NM_004741.5(NOLC1):c.376A>T (p.Ser126Cys) single nucleotide variant not specified [RCV004647492] Chr10:102157490 [GRCh38]
Chr10:103917247 [GRCh37]
Chr10:10q24.32		 uncertain significance
Single allele deletion See cases [RCV004727573] Chr10:102837530..105033440 [GRCh37]
Chr10:10q24.31-24.33		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4235
Count of miRNA genes:914
Interacting mature miRNAs:1105
Transcripts:ENST00000370007, ENST00000405356, ENST00000461421, ENST00000464969, ENST00000476468, ENST00000477977, ENST00000488254, ENST00000603742, ENST00000603946, ENST00000605788
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407311754GWAS960730_Huric acid measurement QTL GWAS960730 (human)7e-09uric acid measurementblood uric acid level (CMO:0000501)10102162217102162218Human

Markers in Region
RH93291  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,922,167 - 103,922,310UniSTSGRCh37
GRCh37185,948,577 - 85,949,023UniSTSGRCh37
Build 36185,721,165 - 85,721,611RGDNCBI36
Celera1097,663,088 - 97,663,231UniSTS
Celera184,192,693 - 84,193,139RGD
Cytogenetic Map1p22UniSTS
Cytogenetic Map10q24.32UniSTS
HuRef1097,554,237 - 97,554,380UniSTS
HuRef184,059,352 - 84,059,797UniSTS
GeneMap99-GB4 RH Map10471.99UniSTS
D10S1274E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,923,209 - 103,923,368UniSTSGRCh37
Build 3610103,913,199 - 103,913,358RGDNCBI36
Celera1097,664,130 - 97,664,289RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,555,279 - 97,555,438UniSTS
RH44513  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,923,367 - 103,923,525UniSTSGRCh37
Build 3610103,913,357 - 103,913,515RGDNCBI36
Celera1097,664,288 - 97,664,446RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,555,437 - 97,555,595UniSTS
GeneMap99-GB4 RH Map10482.2UniSTS
NCBI RH Map101103.2UniSTS
D10S2136  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,922,161 - 103,922,418UniSTSGRCh37
Build 3610103,912,151 - 103,912,408RGDNCBI36
Celera1097,663,082 - 97,663,339RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,554,231 - 97,554,488UniSTS
Stanford-G3 RH Map104635.0UniSTS
NCBI RH Map101103.4UniSTS
GeneMap99-G3 RH Map104871.0UniSTS
NIB1786  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,923,420 - 103,923,574UniSTSGRCh37
Build 3610103,913,410 - 103,913,564RGDNCBI36
Celera1097,664,341 - 97,664,495RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,555,490 - 97,555,644UniSTS
TNG Radiation Hybrid Map1049260.0UniSTS
Stanford-G3 RH Map104642.0UniSTS
GeneMap99-G3 RH Map104878.0UniSTS
STS-AA037752  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,920,579 - 103,920,805UniSTSGRCh37
Build 3610103,910,569 - 103,910,795RGDNCBI36
Celera1097,661,499 - 97,661,725RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,552,648 - 97,552,874UniSTS
GeneMap99-GB4 RH Map10478.05UniSTS
RH48900  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,919,019 - 103,919,294UniSTSGRCh37
Build 3610103,909,009 - 103,909,284RGDNCBI36
Celera1097,659,939 - 97,660,214RGD
Cytogenetic Map10q24.32UniSTS
HuRef1097,551,088 - 97,551,363UniSTS
GeneMap99-GB4 RH Map10482.2UniSTS
NCBI RH Map101103.2UniSTS
RH25273  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,923,421 - 103,923,581UniSTSGRCh37
GRCh37185,947,304 - 85,947,463UniSTSGRCh37
Build 36185,719,892 - 85,720,051RGDNCBI36
Celera1097,664,342 - 97,664,502UniSTS
Celera184,191,420 - 84,191,579RGD
Cytogenetic Map1p22UniSTS
Cytogenetic Map10q24.32UniSTS
HuRef1097,555,491 - 97,555,651UniSTS
HuRef184,058,079 - 84,058,238UniSTS
GeneMap99-GB4 RH Map10478.05UniSTS
G64290  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710103,917,915 - 103,919,303UniSTSGRCh37
Celera1097,658,835 - 97,660,223UniSTS
Cytogenetic Map10q24.32UniSTS
HuRef1097,549,985 - 97,551,372UniSTS
RH18143  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10q24.32UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2436 2788 2251 4971 1726 2351 5 624 1951 465 2269 7299 6468 53 3733 1 852 1743 1616 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005270273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI937215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL500527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL520884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY820769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM473772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM849059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF145090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN312242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D21262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA588285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L37710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z34289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000370007   ⟹   ENSP00000359024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,415 - 102,163,870 (+)Ensembl
Ensembl Acc Id: ENST00000405356   ⟹   ENSP00000385410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,176 - 102,163,871 (+)Ensembl
Ensembl Acc Id: ENST00000461421   ⟹   ENSP00000473927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,409 - 102,160,559 (+)Ensembl
Ensembl Acc Id: ENST00000464969   ⟹   ENSP00000473910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,395 - 102,162,599 (+)Ensembl
Ensembl Acc Id: ENST00000476468   ⟹   ENSP00000474140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,413 - 102,159,938 (+)Ensembl
Ensembl Acc Id: ENST00000477977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,160,730 - 102,163,866 (+)Ensembl
Ensembl Acc Id: ENST00000488254   ⟹   ENSP00000475080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,404 - 102,162,600 (+)Ensembl
Ensembl Acc Id: ENST00000603946   ⟹   ENSP00000474924
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,404 - 102,163,866 (+)Ensembl
Ensembl Acc Id: ENST00000605788   ⟹   ENSP00000474710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10102,152,389 - 102,163,870 (+)Ensembl
RefSeq Acc Id: NM_001284388   ⟹   NP_001271317
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810102,152,389 - 102,163,870 (+)NCBI
HuRef1097,544,003 - 97,555,698 (+)NCBI
CHM1_110104,195,424 - 104,207,115 (+)NCBI
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001284389   ⟹   NP_001271318
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810102,152,389 - 102,163,870 (+)NCBI
HuRef1097,544,003 - 97,555,698 (+)NCBI
CHM1_110104,195,424 - 104,207,115 (+)NCBI
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBI
Sequence:
RefSeq Acc Id: NM_004741   ⟹   NP_004732
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810102,152,389 - 102,163,870 (+)NCBI
GRCh3710103,911,933 - 103,923,627 (+)ENTREZGENE
Build 3610103,901,923 - 103,913,617 (+)NCBI Archive
HuRef1097,544,003 - 97,555,698 (+)NCBI
CHM1_110104,195,424 - 104,207,115 (+)NCBI
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005270273   ⟹   XP_005270330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810102,152,389 - 102,163,870 (+)NCBI
GRCh3710103,911,933 - 103,923,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054367144   ⟹   XP_054223119
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.010103,037,369 - 103,048,850 (+)NCBI
RefSeq Acc Id: NP_004732   ⟸   NM_004741
- Peptide Label: isoform 2
- UniProtKB: Q5VV70 (UniProtKB/Swiss-Prot),   Q15030 (UniProtKB/Swiss-Prot),   Q9BUV3 (UniProtKB/Swiss-Prot),   Q14978 (UniProtKB/Swiss-Prot),   B2RAU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005270330   ⟸   XM_005270273
- Peptide Label: isoform X1
- UniProtKB: A0A0A0MRM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271318   ⟸   NM_001284389
- Peptide Label: isoform 3
- UniProtKB: B2RAU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271317   ⟸   NM_001284388
- Peptide Label: isoform 1
- UniProtKB: A0A0A0MRM9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000359024   ⟸   ENST00000370007
Ensembl Acc Id: ENSP00000473910   ⟸   ENST00000464969
Ensembl Acc Id: ENSP00000385410   ⟸   ENST00000405356
Ensembl Acc Id: ENSP00000474924   ⟸   ENST00000603946
Ensembl Acc Id: ENSP00000474710   ⟸   ENST00000605788
Ensembl Acc Id: ENSP00000475080   ⟸   ENST00000488254
Ensembl Acc Id: ENSP00000473927   ⟸   ENST00000461421
Ensembl Acc Id: ENSP00000474140   ⟸   ENST00000476468
RefSeq Acc Id: XP_054223119   ⟸   XM_054367144
- Peptide Label: isoform X1
Protein Domains
LisH   Srp40 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14978-F1-model_v2 AlphaFold Q14978 1-699 view protein structure

Promoters
RGD ID:7218501
Promoter ID:EPDNEW_H14996
Type:initiation region
Name:NOLC1_1
Description:nucleolar and coiled-body phosphoprotein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810102,152,389 - 102,152,449EPDNEW
RGD ID:6787930
Promoter ID:HG_KWN:10966
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000405356,   NM_004741,   OTTHUMT00000050014,   OTTHUMT00000050015,   OTTHUMT00000050016,   UC001KUQ.2,   UC001KUR.2,   UC009XXB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3610103,901,821 - 103,902,321 (+)MPROMDB
RGD ID:6853280
Promoter ID:EP74461
Type:initiation region
Name:HS_NOLC1
Description:Nucleolar and coiled-body phosphoprotein 1.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 3610103,902,156 - 103,902,216EPD
RGD ID:6787929
Promoter ID:HG_KWN:10967
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000050017
Position:
Human AssemblyChrPosition (strand)Source
Build 3610103,909,876 - 103,910,597 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15608 AgrOrtholog
COSMIC NOLC1 COSMIC
Ensembl Genes ENSG00000166197 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000370007 ENTREZGENE
  ENST00000370007.5 UniProtKB/TrEMBL
  ENST00000405356.5 UniProtKB/Swiss-Prot
  ENST00000461421.5 UniProtKB/TrEMBL
  ENST00000464969.6 UniProtKB/TrEMBL
  ENST00000476468.5 UniProtKB/TrEMBL
  ENST00000488254 ENTREZGENE
  ENST00000488254.6 UniProtKB/Swiss-Prot
  ENST00000603946.5 UniProtKB/TrEMBL
  ENST00000605788 ENTREZGENE
  ENST00000605788.6 UniProtKB/Swiss-Prot
GTEx ENSG00000166197 GTEx
HGNC ID HGNC:15608 ENTREZGENE
Human Proteome Map NOLC1 Human Proteome Map
InterPro LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nopp140-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Srp40_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9221 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 9221 ENTREZGENE
OMIM 602394 OMIM
PANTHER NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 UniProtKB/Swiss-Prot
  NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 UniProtKB/Swiss-Prot
  NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 UniProtKB/TrEMBL
  NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 UniProtKB/TrEMBL
Pfam SRP40_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA31679 PharmGKB
PROSITE LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MRM9 ENTREZGENE, UniProtKB/TrEMBL
  B2RAU8 ENTREZGENE, UniProtKB/TrEMBL
  NOLC1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q15030 ENTREZGENE
  Q5VV70 ENTREZGENE
  Q96J17_HUMAN UniProtKB/TrEMBL
  Q9BUV3 ENTREZGENE
  S4R341_HUMAN UniProtKB/TrEMBL
  S4R349_HUMAN UniProtKB/TrEMBL
  S4R3C2_HUMAN UniProtKB/TrEMBL
  S4R402_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q15030 UniProtKB/Swiss-Prot
  Q5VV70 UniProtKB/Swiss-Prot
  Q9BUV3 UniProtKB/Swiss-Prot