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Gene: Gar1 (GAR1 ribonucleoprotein) Rattus norvegicus
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Symbol: Gar1
Name: GAR1 ribonucleoprotein
Description: Predicted to have box H/ACA snoRNA binding activity and telomerase RNA binding activity. Involved in snoRNA guided rRNA pseudouridine synthesis. Localizes to the box H/ACA snoRNP complex. Predicted to colocalize with the nuclear chromosome, telomeric region. Orthologous to human GAR1 (GAR1 ribonucleoprotein); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: GAR1 homolog, ribonucleoprotein; GAR1 ribonucleoprotein homolog; GAR1 ribonucleoprotein homolog (yeast); h/ACA ribonucleoprotein complex subunit 1; LOC499709; Nola1; nucleolar protein family A member 1; nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs); similar to nucleolar protein family A, member 1; snoRNP protein GAR1
Orthologs:
Homo sapiens (human) : GAR1 (GAR1 ribonucleoprotein)  HGNC  Alliance
Mus musculus (house mouse) : Gar1 (GAR1 ribonucleoprotein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gar1 (GAR1 ribonucleoprotein)
Pan paniscus (bonobo/pygmy chimpanzee) : GAR1 (GAR1 ribonucleoprotein)
Canis lupus familiaris (dog) : GAR1 (GAR1 ribonucleoprotein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gar1 (GAR1 ribonucleoprotein)
Sus scrofa (pig) : GAR1 (GAR1 ribonucleoprotein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02235,250,453 - 235,258,464 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0274,665,990 - 74,673,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42227,267,775 - 227,275,054 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2210,660,447 - 210,667,725 (-)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Gar1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563995
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.