Gar1 (GAR1 ribonucleoprotein) - Rat Genome Database

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Gene: Gar1 (GAR1 ribonucleoprotein) Rattus norvegicus
Analyze
Symbol: Gar1
Name: GAR1 ribonucleoprotein
RGD ID: 1563995
Description: Predicted to enable box H/ACA snoRNA binding activity and telomerase RNA binding activity. Involved in snoRNA guided rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. Orthologous to human GAR1 (GAR1 ribonucleoprotein); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GAR1 homolog, ribonucleoprotein; GAR1 ribonucleoprotein homolog; GAR1 ribonucleoprotein homolog (yeast); h/ACA ribonucleoprotein complex subunit 1; LOC499709; Nola1; nucleolar protein family A member 1; nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs); similar to nucleolar protein family A, member 1; snoRNP protein GAR1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,049,471 - 221,056,749 (-)NCBIGRCr8
mRatBN7.22218,375,231 - 218,382,509 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,375,353 - 218,382,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2226,060,286 - 226,067,566 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,959,973 - 223,967,253 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,817,626 - 218,824,906 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02235,250,453 - 235,258,464 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,250,453 - 235,257,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0274,665,990 - 74,673,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42227,267,775 - 227,275,054 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2210,660,447 - 210,667,725 (-)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140. Wang C, etal., Mol Cell Biol 2002 Dec;22(24):8457-66.
7. The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. Watkins NJ and Bohnsack MT, Wiley Interdiscip Rev RNA. 2012 May-Jun;3(3):397-414. doi: 10.1002/wrna.117. Epub 2011 Nov 7.
Additional References at PubMed
PMID:10757788   PMID:15489334   PMID:18082603   PMID:19135898   PMID:20351177   PMID:22658674   PMID:22681889   PMID:24270157   PMID:29695869  


Genomics

Comparative Map Data
Gar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,049,471 - 221,056,749 (-)NCBIGRCr8
mRatBN7.22218,375,231 - 218,382,509 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2218,375,353 - 218,382,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2226,060,286 - 226,067,566 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02223,959,973 - 223,967,253 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02218,817,626 - 218,824,906 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02235,250,453 - 235,258,464 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,250,453 - 235,257,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0274,665,990 - 74,673,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42227,267,775 - 227,275,054 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2210,660,447 - 210,667,725 (-)NCBICelera
Cytogenetic Map2q43NCBI
GAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384109,815,510 - 109,824,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4109,815,510 - 109,824,740 (+)EnsemblGRCh38hg38GRCh38
GRCh374110,736,666 - 110,745,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364110,956,115 - 110,965,342 (+)NCBINCBI36Build 36hg18NCBI36
Build 344111,094,269 - 111,103,495NCBI
Celera4108,030,240 - 108,039,463 (+)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4106,468,787 - 106,478,009 (+)NCBIHuRef
CHM1_14110,713,156 - 110,722,381 (+)NCBICHM1_1
T2T-CHM13v2.04113,117,572 - 113,126,796 (+)NCBIT2T-CHM13v2.0
Gar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393129,618,561 - 129,625,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3129,618,561 - 129,625,045 (-)EnsemblGRCm39 Ensembl
GRCm383129,824,912 - 129,831,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3129,824,912 - 129,831,396 (-)EnsemblGRCm38mm10GRCm38
MGSCv373129,527,830 - 129,534,314 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363129,816,942 - 129,823,178 (-)NCBIMGSCv36mm8
Celera3136,337,668 - 136,344,152 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map359.16NCBI
Gar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496475,579 - 483,030 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955496476,061 - 483,030 (-)NCBIChiLan1.0ChiLan1.0
GAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23107,906,362 - 107,915,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14108,199,753 - 108,209,052 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04102,311,275 - 102,320,579 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14112,878,912 - 112,888,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4112,879,223 - 112,887,828 (+)Ensemblpanpan1.1panPan2
GAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,995,710 - 30,004,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,996,148 - 30,004,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3212,025,443 - 12,043,375 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03230,207,427 - 30,225,345 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3230,216,948 - 30,245,664 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13230,201,712 - 30,219,616 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03229,944,865 - 29,962,702 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,886,399 - 9,904,243 (-)NCBIUU_Cfam_GSD_1.0
Gar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530110,936,187 - 10,944,501 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365631,006,517 - 1,014,808 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365631,006,475 - 1,014,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,400,005 - 112,414,033 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,401,114 - 112,414,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,483,851 - 120,497,033 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1757,713,245 - 57,722,831 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl757,713,881 - 57,722,224 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603736,365,953 - 36,375,519 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483094,090 - 102,155 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462483094,929 - 102,170 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gar1
48 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:43
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000013149
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 20 20 20 3 20 53 20 28 2
Low 22 37 21 16 21 8 11 21 15 13 9 8
Below cutoff 1

Sequence


RefSeq Acc Id: ENSRNOT00000078074   ⟹   ENSRNOP00000074835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2218,375,353 - 218,382,524 (-)Ensembl
Rnor_6.0 Ensembl2235,250,453 - 235,257,731 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093472   ⟹   ENSRNOP00000076165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2235,252,216 - 235,257,464 (-)Ensembl
RefSeq Acc Id: NM_001024306   ⟹   NP_001019477
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82221,049,471 - 221,056,749 (-)NCBI
mRatBN7.22218,375,231 - 218,382,509 (-)NCBI
Rnor_6.02235,250,453 - 235,257,731 (-)NCBI
Rnor_5.0274,665,990 - 74,673,268 (+)NCBI
RGSC_v3.42227,267,775 - 227,275,054 (-)RGD
Celera2210,660,447 - 210,667,725 (-)RGD
Sequence:
RefSeq Acc Id: NP_001019477   ⟸   NM_001024306
- UniProtKB: Q6AYA1 (UniProtKB/Swiss-Prot),   A6HVQ1 (UniProtKB/TrEMBL),   A6HVP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074835   ⟸   ENSRNOT00000078074
RefSeq Acc Id: ENSRNOP00000076165   ⟸   ENSRNOT00000093472

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYA1-F1-model_v2 AlphaFold Q6AYA1 1-226 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691756
Promoter ID:EPDNEW_R2274
Type:initiation region
Name:Gar1_1
Description:GAR1 ribonucleoprotein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2275  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02235,257,492 - 235,257,552EPDNEW
RGD ID:13691750
Promoter ID:EPDNEW_R2275
Type:multiple initiation site
Name:Gar1_2
Description:GAR1 ribonucleoprotein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2274  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02235,257,744 - 235,257,804EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563995 AgrOrtholog
BioCyc Gene G2FUF-51237 BioCyc
Ensembl Genes ENSRNOG00000061146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055027570 UniProtKB/Swiss-Prot
  ENSRNOG00060002656 UniProtKB/Swiss-Prot
  ENSRNOG00065014326 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000078074 ENTREZGENE
  ENSRNOT00000078074.3 UniProtKB/TrEMBL
  ENSRNOT00055047755 UniProtKB/Swiss-Prot
  ENSRNOT00060004245 UniProtKB/Swiss-Prot
  ENSRNOT00065023622 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.10.230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7127379 IMAGE-MGC_LOAD
InterPro Gar1/Naf1_Cbf5-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H/ACA_rnp_Gar1/Naf1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:499709 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94141 IMAGE-MGC_LOAD
NCBI Gene 499709 ENTREZGENE
PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gar1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gar1 PhenoGen
RatGTEx ENSRNOG00000061146 RatGTEx
  ENSRNOG00055027570 RatGTEx
  ENSRNOG00060002656 RatGTEx
  ENSRNOG00065014326 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2R9E9_RAT UniProtKB/TrEMBL
  A6HVP9 ENTREZGENE, UniProtKB/TrEMBL
  A6HVQ1 ENTREZGENE, UniProtKB/TrEMBL
  GAR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Gar1  GAR1 ribonucleoprotein  Gar1  GAR1 homolog, ribonucleoprotein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-09 Gar1  GAR1 homolog, ribonucleoprotein  Gar1  GAR1 ribonucleoprotein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-07 Gar1  GAR1 ribonucleoprotein  Gar1  GAR1 ribonucleoprotein homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Gar1  GAR1 ribonucleoprotein homolog (yeast)  Nola1  nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Nola1  nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)  LOC499709  similar to nucleolar protein family A, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC499709  similar to nucleolar protein family A, member 1      Symbol and Name status set to provisional 70820 PROVISIONAL