BORCS7-ASMT (BORCS7-ASMT readthrough (NMD candidate))

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Gene: BORCS7-ASMT (BORCS7-ASMT readthrough (NMD candidate)) Homo sapiens

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No known orthologs.

Symbol:

BORCS7-ASMT

Name:

BORCS7-ASMT readthrough (NMD candidate)

RGD ID:

7365766

HGNC Page

HGNC:49183

Description:

This locus represents naturally occurring read-through transcription between the neighboring C10orf32 (chromosome 10 open reading frame 32) and AS3MT (arsenic, +3 oxidation state, methyltransferase) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

Type:

ncrna

RefSeq Status:

VALIDATED

Previously known as:

C10orf32-AS3MT; C10orf32-ASMT

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	102,854,210 - 102,901,899 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	10	104,613,967 - 104,661,656 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	10	q24.32	NCBI
HuRef	10	98,248,739 - 98,296,045 (+)	NCBI		HuRef
CHM1_1	10	104,897,182 - 104,944,505 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	103,739,994 - 103,787,669 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

desmoplastic/nodular medulloblastoma (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

cisplatin (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20967262	PMID:22383894	PMID:23453885	PMID:23974872	PMID:24954895	PMID:25056061	PMID:25249183

Genomics

Variants

Variants in BORCS7-ASMT
45 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 10q24.32-24.33(chr10:102710547-103110626)x1	copy number loss	See cases [RCV000138062]	Chr10:102710547..103110626 [GRCh38] Chr10:104470304..104870383 [GRCh37] Chr10:104460294..104860373 [NCBI36] Chr10:10q24.32-24.33	uncertain significance
GRCh38/hg38 10q24.31-26.3(chr10:100600492-133622588)x3	copy number gain	See cases [RCV000137747]	Chr10:100600492..133622588 [GRCh38] Chr10:102360249..135436092 [GRCh37] Chr10:102350239..135286082 [NCBI36] Chr10:10q24.31-26.3	pathogenic
GRCh38/hg38 10q24.32-25.3(chr10:102732173-114085105)x1	copy number loss	See cases [RCV000143371]	Chr10:102732173..114085105 [GRCh38] Chr10:104491930..115844864 [GRCh37] Chr10:104481920..115834854 [NCBI36] Chr10:10q24.32-25.3	pathogenic
GRCh38/hg38 10q23.33-25.3(chr10:95112607-116776637)x3	copy number gain	See cases [RCV000050747]	Chr10:95112607..116776637 [GRCh38] Chr10:96872364..118383651 [GRCh37] Chr10:96862354..118526138 [NCBI36] Chr10:10q23.33-25.3	pathogenic
GRCh38/hg38 10q24.32-24.33(chr10:102243341-103929730)x1	copy number loss	See cases [RCV000052568]	Chr10:102243341..103929730 [GRCh38] Chr10:104003098..105689488 [GRCh37] Chr10:103993088..105679478 [NCBI36] Chr10:10q24.32-24.33	pathogenic
GRCh38/hg38 10q23.31-26.3(chr10:91048545-133620674)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]\|See cases [RCV000053560]	Chr10:91048545..133620674 [GRCh38] Chr10:92808302..135434178 [GRCh37] Chr10:92798282..135284168 [NCBI36] Chr10:10q23.31-26.3	pathogenic
GRCh38/hg38 10q24.31-26.3(chr10:100194215-132432797)x3	copy number gain	See cases [RCV000053564]	Chr10:100194215..132432797 [GRCh38] Chr10:101953972..134246301 [GRCh37] Chr10:101943962..134096291 [NCBI36] Chr10:10q24.31-26.3	pathogenic
NM_020682.4(AS3MT):c.254G>T (p.Cys85Phe)	single nucleotide variant	not specified [RCV004315247]	Chr10:102872531 [GRCh38] Chr10:104632288 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.43-10G>T	single nucleotide variant	not provided [RCV000947280]	Chr10:102870074 [GRCh38] Chr10:104629831 [GRCh37] Chr10:10q24.32	benign
NM_020682.4(AS3MT):c.835A>G (p.Ile279Val)	single nucleotide variant	not specified [RCV004301049]	Chr10:102878941 [GRCh38] Chr10:104638698 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.950A>G (p.Gln317Arg)	single nucleotide variant	not specified [RCV004302344]	Chr10:102890608 [GRCh38] Chr10:104650365 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.220A>G (p.Ile74Val)	single nucleotide variant	not specified [RCV004156903]	Chr10:102872497 [GRCh38] Chr10:104632254 [GRCh37] Chr10:10q24.32	uncertain significance
NM_001136200.2(BORCS7):c.292C>G (p.Gln98Glu)	single nucleotide variant	not specified [RCV004182390]	Chr10:102862895 [GRCh38] Chr10:104622652 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.818T>C (p.Val273Ala)	single nucleotide variant	not specified [RCV004110332]	Chr10:102878924 [GRCh38] Chr10:104638681 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.1034A>G (p.Asp345Gly)	single nucleotide variant	not specified [RCV004076332]	Chr10:102900606 [GRCh38] Chr10:104660363 [GRCh37] Chr10:10q24.32	uncertain significance
NM_001136200.2(BORCS7):c.77C>A (p.Thr26Asn)	single nucleotide variant	not specified [RCV004145784]	Chr10:102854363 [GRCh38] Chr10:104614120 [GRCh37] Chr10:10q24.32	likely benign
NM_020682.4(AS3MT):c.556G>A (p.Val186Ile)	single nucleotide variant	not specified [RCV004225584]	Chr10:102876981 [GRCh38] Chr10:104636738 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.311C>G (p.Thr104Ser)	single nucleotide variant	not specified [RCV004161262]	Chr10:102872588 [GRCh38] Chr10:104632345 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.622G>A (p.Gly208Ser)	single nucleotide variant	not specified [RCV004155414]	Chr10:102878390 [GRCh38] Chr10:104638147 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.355A>G (p.Met119Val)	single nucleotide variant	not specified [RCV004194014]	Chr10:102873130 [GRCh38] Chr10:104632887 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.349T>C (p.Tyr117His)	single nucleotide variant	not specified [RCV004335543]	Chr10:102873124 [GRCh38] Chr10:104632881 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.962T>C (p.Ile321Thr)	single nucleotide variant	not specified [RCV004420435]	Chr10:102890620 [GRCh38] Chr10:104650377 [GRCh37] Chr10:10q24.32	uncertain significance
NC_000010.11:g.(102444036_?)_(?_104726221)del	deletion	Desmoplastic/nodular medulloblastoma [RCV000003754]	Chr10:102444036..104726221 [GRCh38] Chr10:10q24.32-25.1	pathogenic
NM_020682.4(AS3MT):c.661C>A (p.Gln221Lys)	single nucleotide variant	not specified [RCV004420433]	Chr10:102878429 [GRCh38] Chr10:104638186 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.971T>C (p.Ile324Thr)	single nucleotide variant	not specified [RCV004420436]	Chr10:102890629 [GRCh38] Chr10:104650386 [GRCh37] Chr10:10q24.32	uncertain significance
NM_001136200.2(BORCS7):c.284C>T (p.Ser95Leu)	single nucleotide variant	not specified [RCV004434117]	Chr10:102862887 [GRCh38] Chr10:104622644 [GRCh37] Chr10:10q24.32	uncertain significance
NM_020682.4(AS3MT):c.218G>T (p.Trp73Leu)	single nucleotide variant	not specified [RCV004663481]	Chr10:102872495 [GRCh38] Chr10:104632252 [GRCh37] Chr10:10q24.32	uncertain significance

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
407148103	GWAS797079_H	coronary artery disease QTL GWAS797079 (human)		5e-15	coronary artery disease		10	102878723	102878724	Human
406918981	GWAS567957_H	risk-taking behaviour QTL GWAS567957 (human)		4e-08	risk-taking behaviour		10	102883839	102883840	Human
407223363	GWAS872339_H	Pregn steroid monosulfate measurement QTL GWAS872339 (human)		3e-16	Pregn steroid monosulfate measurement		10	102882480	102882481	Human
407106891	GWAS755867_H	erythrocyte count QTL GWAS755867 (human)		5e-16	erythrocyte count	red blood cell count (CMO:0000025)	10	102854593	102854594	Human
407157580	GWAS806556_H	smoking status measurement QTL GWAS806556 (human)		1e-08	smoking status measurement		10	102878235	102878236	Human
407021386	GWAS670362_H	testosterone measurement QTL GWAS670362 (human)		3e-08	testosterone measurement	serum testosterone level (CMO:0000568)	10	102889600	102889601	Human
407066446	GWAS715422_H	red blood cell density measurement QTL GWAS715422 (human)		5e-19	red blood cell density measurement		10	102854593	102854594	Human
406929740	GWAS578716_H	smoking initiation QTL GWAS578716 (human)		2e-66	smoking initiation		10	102883839	102883840	Human
407413593	GWAS1062569_H	response to angiotensin receptor blocker QTL GWAS1062569 (human)		0.0000004	response to angiotensin receptor blocker		10	102877751	102877752	Human
407214679	GWAS863655_H	body mass index QTL GWAS863655 (human)		9e-13	body mass index	body mass index (BMI) (CMO:0000105)	10	102875591	102875592	Human
2314551	GLUCO52_H	Glucose level QTL 52 (human)	1.4		Glucose level		10	77605006	103605006	Human
407147857	GWAS796833_H	smoking initiation QTL GWAS796833 (human)		2e-13	smoking initiation		10	102858938	102858939	Human
406974550	GWAS623526_H	smoking initiation QTL GWAS623526 (human)		2e-16	smoking initiation		10	102881922	102881923	Human
407337822	GWAS986798_H	neutrophil count QTL GWAS986798 (human)		5e-11	neutrophil quantity (VT:0000222)	blood neutrophil count (CMO:0000030)	10	102856743	102856744	Human
407090265	GWAS739241_H	feeling tense measurement QTL GWAS739241 (human)		2e-09	feeling tense measurement		10	102876898	102876899	Human
407078239	GWAS727215_H	testosterone measurement QTL GWAS727215 (human)		1e-25	testosterone measurement	serum testosterone level (CMO:0000568)	10	102859535	102859536	Human
407112027	GWAS761003_H	systolic blood pressure QTL GWAS761003 (human)		3e-12	systolic blood pressure	systolic blood pressure (CMO:0000004)	10	102856906	102856907	Human
407112289	GWAS761265_H	hypertension QTL GWAS761265 (human)		4e-10	hypertension		10	102856906	102856907	Human
406936935	GWAS585911_H	neuroticism measurement QTL GWAS585911 (human)		1e-09	neuroticism measurement		10	102876898	102876899	Human
407175266	GWAS824242_H	obsolete_red blood cell distribution width QTL GWAS824242 (human)		2e-15	obsolete_red blood cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	10	102875591	102875592	Human
407145836	GWAS794812_H	body mass index QTL GWAS794812 (human)		6e-17	systolic blood pressure	systolic blood pressure (CMO:0000004)	10	102856906	102856907	Human
407162732	GWAS811708_H	schizophrenia QTL GWAS811708 (human)		4e-20	schizophrenia		10	102866129	102866130	Human
407217772	GWAS866748_H	hematocrit QTL GWAS866748 (human)		8e-10	hematocrit	hematocrit (CMO:0000037)	10	102875346	102875347	Human
407166063	GWAS815039_H	diastolic blood pressure QTL GWAS815039 (human)		8e-09	diastolic blood pressure	diastolic blood pressure (CMO:0000005)	10	102856906	102856907	Human
407250806	GWAS899782_H	leukocyte count QTL GWAS899782 (human)		8e-15	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	10	102877845	102877846	Human
407166064	GWAS815040_H	mean arterial pressure QTL GWAS815040 (human)		1e-11	mean arterial pressure	mean arterial blood pressure (CMO:0000009)	10	102856906	102856907	Human
406962293	GWAS611269_H	neuroticism measurement QTL GWAS611269 (human)		5e-09	neuroticism measurement		10	102876519	102876520	Human
407107190	GWAS756166_H	schizophrenia QTL GWAS756166 (human)		2e-18	schizophrenia		10	102869116	102869117	Human
406979447	GWAS628423_H	schizophrenia QTL GWAS628423 (human)		2e-08	schizophrenia		10	102876898	102876899	Human
407072891	GWAS721867_H	testosterone measurement QTL GWAS721867 (human)		1e-18	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
407385715	GWAS1034691_H	red blood cell density measurement QTL GWAS1034691 (human)		1e-20	red blood cell density measurement		10	102859570	102859571	Human
407252861	GWAS901837_H	angina pectoris QTL GWAS901837 (human)		1e-09	angina pectoris		10	102876519	102876520	Human
407406345	GWAS1055321_H	bipolar disorder QTL GWAS1055321 (human)		6e-14	bipolar disorder		10	102861311	102861312	Human
407130117	GWAS779093_H	Back pain QTL GWAS779093 (human)		4e-09	Back pain		10	102868477	102868478	Human
407179782	GWAS828758_H	mean corpuscular volume QTL GWAS828758 (human)		2e-12	mean corpuscular volume	mean corpuscular volume (CMO:0000038)	10	102876519	102876520	Human
407077126	GWAS726102_H	hippocampal amigdala transition area volume QTL GWAS726102 (human)		2e-09	hippocampal amigdala transition area volume		10	102876519	102876520	Human
406961415	GWAS610391_H	anxiety QTL GWAS610391 (human)		2e-12	anxiety		10	102875591	102875592	Human
407147273	GWAS796249_H	schizophrenia QTL GWAS796249 (human)		2e-08	schizophrenia		10	102882480	102882481	Human
407016464	GWAS665440_H	Calcium channel blocker use measurement QTL GWAS665440 (human)		6e-10	Calcium channel blocker use measurement		10	102876898	102876899	Human
407160087	GWAS809063_H	testosterone measurement QTL GWAS809063 (human)		8e-12	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
406953492	GWAS602468_H	Moderate albuminuria QTL GWAS602468 (human)		0.000006	Moderate albuminuria		10	102876898	102876899	Human
407246879	GWAS895855_H	myocardial infarction QTL GWAS895855 (human)		2e-13	myocardial infarction		10	102892566	102892567	Human
406922013	GWAS570989_H	smoking initiation QTL GWAS570989 (human)		2e-64	smoking initiation		10	102894626	102894627	Human
406922012	GWAS570988_H	smoking initiation QTL GWAS570988 (human)		1e-24	smoking initiation		10	102890176	102890177	Human
407058206	GWAS707182_H	risky sexual behaviour measurement QTL GWAS707182 (human)		1e-09	risky sexual behaviour measurement		10	102894626	102894627	Human
407111194	GWAS760170_H	body mass index QTL GWAS760170 (human)		1e-11	body mass index	body mass index (BMI) (CMO:0000105)	10	102876519	102876520	Human
407111195	GWAS760171_H	mean arterial pressure QTL GWAS760171 (human)		3e-08	mean arterial pressure	mean arterial blood pressure (CMO:0000009)	10	102856906	102856907	Human
407082786	GWAS731762_H	obsolete_red blood cell distribution width QTL GWAS731762 (human)		2e-10	obsolete_red blood cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	10	102875346	102875347	Human
407146278	GWAS795254_H	body mass index QTL GWAS795254 (human)		5e-11	body mass index	body mass index (BMI) (CMO:0000105)	10	102856906	102856907	Human
407247650	GWAS896626_H	myocardial infarction QTL GWAS896626 (human)		5e-16	myocardial infarction		10	102892566	102892567	Human
407179811	GWAS828787_H	wellbeing measurement QTL GWAS828787 (human)		2e-08	wellbeing measurement		10	102856906	102856907	Human
407116834	GWAS765810_H	schizophrenia QTL GWAS765810 (human)		9e-19	schizophrenia		10	102889618	102889619	Human
407305259	GWAS954235_H	schizophrenia, intelligence, self reported educational attainment QTL GWAS954235 (human)		3e-20	schizophrenia, intelligence, self reported educational attainment		10	102875346	102875347	Human
407246632	GWAS895608_H	angina pectoris QTL GWAS895608 (human)		3e-10	angina pectoris		10	102856906	102856907	Human
407178037	GWAS827013_H	pulse pressure measurement, alcohol drinking QTL GWAS827013 (human)		1e-29	pulse pressure measurement, alcohol drinking	pulse pressure (CMO:0000292)	10	102899261	102899262	Human
407246389	GWAS895365_H	angina pectoris QTL GWAS895365 (human)		5e-15	angina pectoris		10	102876519	102876520	Human
407234614	GWAS883590_H	hip circumference QTL GWAS883590 (human)		1e-08	hip circumference	hip circumference (CMO:0000014)	10	102876519	102876520	Human
407212598	GWAS861574_H	schizophrenia QTL GWAS861574 (human)		6e-09	schizophrenia		10	102882480	102882481	Human
407304755	GWAS953731_H	schizophrenia QTL GWAS953731 (human)		3e-16	schizophrenia		10	102866129	102866130	Human
407246899	GWAS895875_H	mean corpuscular hemoglobin QTL GWAS895875 (human)		5e-14	mean corpuscular hemoglobin	mean corpuscular hemoglobin (CMO:0000290)	10	102877845	102877846	Human
407392816	GWAS1041792_H	insomnia QTL GWAS1041792 (human)		5e-10	insomnia		10	102877751	102877752	Human
407148348	GWAS797324_H	coronary artery disease QTL GWAS797324 (human)		4e-15	coronary artery disease		10	102878723	102878724	Human
407392305	GWAS1041281_H	age at menopause QTL GWAS1041281 (human)		2e-10	age at menopause		10	102889972	102889973	Human
407163963	GWAS812939_H	erythrocyte measurement QTL GWAS812939 (human)		3e-12	erythrocyte measurement	red blood cell measurement (CMO:0001356)	10	102878107	102878108	Human
407220933	GWAS869909_H	pulse pressure measurement QTL GWAS869909 (human)		1e-10	pulse pressure measurement	pulse pressure (CMO:0000292)	10	102868477	102868478	Human
407216069	GWAS865045_H	mean corpuscular volume QTL GWAS865045 (human)		9e-16	mean corpuscular volume	mean corpuscular volume (CMO:0000038)	10	102883090	102883091	Human
407157955	GWAS806931_H	testosterone measurement QTL GWAS806931 (human)		7e-19	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
407220685	GWAS869661_H	pregnenolone sulfate measurement QTL GWAS869661 (human)		3e-14	pregnenolone sulfate measurement		10	102882383	102882384	Human
407369679	GWAS1018655_H	schizophrenia QTL GWAS1018655 (human)		8e-10	schizophrenia		10	102894820	102894821	Human
407033036	GWAS682012_H	free androgen index QTL GWAS682012 (human)		3e-16	free androgen index		10	102863296	102863297	Human
407154379	GWAS803355_H	Alzheimer disease, educational attainment QTL GWAS803355 (human)		0.0000001	Alzheimer disease, educational attainment		10	102897543	102897544	Human
407099345	GWAS748321_H	schizophrenia QTL GWAS748321 (human)		4e-13	schizophrenia		10	102869116	102869117	Human
407174103	GWAS823079_H	obsolete_red blood cell distribution width QTL GWAS823079 (human)		6e-15	obsolete_red blood cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	10	102875591	102875592	Human
407115987	GWAS764963_H	mean reticulocyte volume QTL GWAS764963 (human)		4e-24	reticulocyte morphology trait (VT:0002424)	mean corpuscular volume (CMO:0000038)	10	102876898	102876899	Human
407124435	GWAS773411_H	body height QTL GWAS773411 (human)		3e-20	body height (VT:0001253)	body height (CMO:0000106)	10	102882480	102882481	Human
407176927	GWAS825903_H	pulse pressure measurement, alcohol consumption measurement QTL GWAS825903 (human)		8e-11	pulse pressure measurement, alcohol consumption measurement	ethanol drink intake rate (CMO:0001407)	10	102899261	102899262	Human
407104222	GWAS753198_H	urinary arsenic measurement QTL GWAS753198 (human)		1e-15	urinary arsenic measurement		10	102888092	102888093	Human
407176922	GWAS825898_H	pulse pressure measurement, alcohol drinking QTL GWAS825898 (human)		4e-23	pulse pressure measurement, alcohol drinking	pulse pressure (CMO:0000292)	10	102899261	102899262	Human
407179495	GWAS828471_H	testosterone measurement QTL GWAS828471 (human)		4e-31	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
407161063	GWAS810039_H	hypertension QTL GWAS810039 (human)		7e-13	hypertension		10	102856906	102856907	Human
407104231	GWAS753207_H	urinary arsenic measurement QTL GWAS753207 (human)		2e-09	urinary arsenic measurement		10	102868477	102868478	Human
407104230	GWAS753206_H	urinary arsenic measurement QTL GWAS753206 (human)		2e-38	urinary arsenic measurement		10	102874717	102874718	Human
407104228	GWAS753204_H	urinary arsenic measurement QTL GWAS753204 (human)		6e-24	urinary arsenic measurement		10	102888092	102888093	Human
407224044	GWAS873020_H	testosterone measurement QTL GWAS873020 (human)		6e-15	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863821	102863822	Human
407104238	GWAS753214_H	urinary arsenic measurement QTL GWAS753214 (human)		8e-08	urinary arsenic measurement		10	102888092	102888093	Human
407161066	GWAS810042_H	diastolic blood pressure QTL GWAS810042 (human)		6e-13	diastolic blood pressure	diastolic blood pressure (CMO:0000005)	10	102856906	102856907	Human
406940911	GWAS589887_H	protein measurement QTL GWAS589887 (human)		4e-15	protein measurement		10	102882480	102882481	Human
407391975	GWAS1040951_H	age at menopause QTL GWAS1040951 (human)		2e-08	age at menopause		10	102889972	102889973	Human
406933233	GWAS582209_H	anxiety QTL GWAS582209 (human)		4e-12	anxiety		10	102876898	102876899	Human
407020787	GWAS669763_H	testosterone measurement QTL GWAS669763 (human)		7e-21	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
407202295	GWAS851271_H	autism spectrum disorder, schizophrenia QTL GWAS851271 (human)		3e-12	autism spectrum disorder, schizophrenia		10	102875346	102875347	Human
407385852	GWAS1034828_H	obsolete_red blood cell distribution width QTL GWAS1034828 (human)		9e-08	obsolete_red blood cell distribution width	red blood cell distribution width- standard deviation (CMO:0003232)	10	102875346	102875347	Human
407109621	GWAS758597_H	body mass index QTL GWAS758597 (human)		1e-13	body mass index	body mass index (BMI) (CMO:0000105)	10	102875591	102875592	Human
407245305	GWAS894281_H	body mass index QTL GWAS894281 (human)		6e-12	body mass index	body mass index (BMI) (CMO:0000105)	10	102856906	102856907	Human
407177210	GWAS826186_H	pulse pressure measurement, alcohol consumption measurement QTL GWAS826186 (human)		7e-10	pulse pressure measurement, alcohol consumption measurement	ethanol drink intake rate (CMO:0001407)	10	102899261	102899262	Human
407373195	GWAS1022171_H	anxiety measurement QTL GWAS1022171 (human)		0.000004	anxiety measurement		10	102877751	102877752	Human
407084679	GWAS733655_H	smoking initiation QTL GWAS733655 (human)		1e-14	smoking initiation		10	102883484	102883485	Human
407295107	GWAS944083_H	schizophrenia QTL GWAS944083 (human)		6e-18	schizophrenia		10	102869708	102869709	Human
407096205	GWAS745181_H	schizophrenia QTL GWAS745181 (human)		1e-17	schizophrenia		10	102869116	102869117	Human
407098252	GWAS747228_H	schizophrenia QTL GWAS747228 (human)		2e-16	schizophrenia		10	102869116	102869117	Human
406962318	GWAS611294_H	mean arterial pressure QTL GWAS611294 (human)		4e-09	mean arterial pressure	mean arterial blood pressure (CMO:0000009)	10	102869254	102869255	Human
407211925	GWAS860901_H	testosterone measurement QTL GWAS860901 (human)		1e-26	testosterone measurement	serum testosterone level (CMO:0000568)	10	102859535	102859536	Human
407212944	GWAS861920_H	body mass index QTL GWAS861920 (human)		2e-12	body mass index	body mass index (BMI) (CMO:0000105)	10	102856906	102856907	Human
407097758	GWAS746734_H	reticulocyte count QTL GWAS746734 (human)		4e-11	reticulocyte count	total reticulocyte count (CMO:0003020)	10	102869116	102869117	Human
406892447	GWAS541423_H	visceral adipose tissue measurement QTL GWAS541423 (human)		5e-11	visceral adipose tissue measurement	abdominal fat morphological measurement (CMO:0000311)	10	102878723	102878724	Human
407215525	GWAS864501_H	coronary artery disease QTL GWAS864501 (human)		1e-23	coronary artery disease		10	102892566	102892567	Human
407115173	GWAS764149_H	pulse pressure measurement QTL GWAS764149 (human)		2e-11	pulse pressure measurement	pulse pressure (CMO:0000292)	10	102856906	102856907	Human
407296174	GWAS945150_H	body mass index QTL GWAS945150 (human)		1e-10	body mass index	body mass index (BMI) (CMO:0000105)	10	102875591	102875592	Human
407166126	GWAS815102_H	cortical thickness QTL GWAS815102 (human)		1e-17	cortical thickness		10	102876898	102876899	Human
407230126	GWAS879102_H	X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement QTL GWAS879102 (human)		6e-11	X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement		10	102877098	102877099	Human
407147444	GWAS796420_H	urinary arsenic measurement QTL GWAS796420 (human)		3e-09	urinary arsenic measurement		10	102863821	102863822	Human
407122100	GWAS771076_H	neuroticism measurement QTL GWAS771076 (human)		5e-10	neuroticism measurement		10	102876898	102876899	Human
407128246	GWAS777222_H	Back pain QTL GWAS777222 (human)		0.0000001	Back pain		10	102868477	102868478	Human
407042742	GWAS691718_H	schizophrenia, gastroesophageal reflux disease QTL GWAS691718 (human)		1e-11	schizophrenia, gastroesophageal reflux disease		10	102866129	102866130	Human
407158961	GWAS807937_H	testosterone measurement QTL GWAS807937 (human)		6e-19	testosterone measurement	serum testosterone level (CMO:0000568)	10	102863296	102863297	Human
407173810	GWAS822786_H	bipolar disorder QTL GWAS822786 (human)		1e-12	bipolar disorder		10	102868477	102868478	Human
407098043	GWAS747019_H	schizophrenia QTL GWAS747019 (human)		3e-15	schizophrenia		10	102869116	102869117	Human
407098298	GWAS747274_H	obsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, unipolar depression, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa QTL GWAS747274 (human)		3e-16	obsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, unipolar depression, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa		10	102869116	102869117	Human
407136191	GWAS785167_H	systolic blood pressure, alcohol drinking QTL GWAS785167 (human)		6e-13	systolic blood pressure, alcohol drinking	systolic blood pressure (CMO:0000004)	10	102899261	102899262	Human
407097791	GWAS746767_H	dihydroorotate measurement QTL GWAS746767 (human)		3e-10	dihydroorotate measurement		10	102873487	102873488	Human
407208632	GWAS857608_H	systolic blood pressure QTL GWAS857608 (human)		0.000009	systolic blood pressure	systolic blood pressure (CMO:0000004)	10	102856906	102856907	Human
407236792	GWAS885768_H	body weight QTL GWAS885768 (human)		5e-10	body mass (VT:0001259)	body weight (CMO:0000012)	10	102876519	102876520	Human

Markers in Region

STS-N70305

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	10	104,661,429 - 104,661,559	UniSTS	GRCh37
Build 36	10	104,651,419 - 104,651,549	RGD	NCBI36
Celera	10	98,401,664 - 98,401,794	RGD
Cytogenetic Map	10	q	UniSTS
Cytogenetic Map	10	q24.32	UniSTS
HuRef	10	98,295,818 - 98,295,948	UniSTS
GeneMap99-GB4 RH Map	10	478.66	UniSTS

RH44877

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	10	104,661,399 - 104,661,506	UniSTS	GRCh37
Build 36	10	104,651,389 - 104,651,496	RGD	NCBI36
Celera	10	98,401,634 - 98,401,741	RGD
Cytogenetic Map	10	q	UniSTS
Cytogenetic Map	10	q24.32	UniSTS
HuRef	10	98,295,788 - 98,295,895	UniSTS
GeneMap99-GB4 RH Map	10	482.2	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_037644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL358790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC040069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NR_037644

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	10	102,854,210 - 102,901,899 (+)	NCBI
GRCh37	10	104,613,967 - 104,661,656 (+)	NCBI
HuRef	10	98,248,739 - 98,296,045 (+)	NCBI
CHM1_1	10	104,897,182 - 104,944,505 (+)	NCBI
T2T-CHM13v2.0	10	103,739,994 - 103,787,669 (+)	NCBI

Sequence:

show sequence

CTCTTTTCCTTCCGCTTTGCTTGTCTTTTGGCCCCGGCGACTCACCATCGTCAGTGCGCAACCG
TTCGCTAACTGAAATGATGGCGACTGGAACGCCAGAGTCTCAAGCGCGGTTCGGTCAGTCCGTG
AAGGGGCTTCTCACGGAGAAGGTGACCACCTGTGGTACTGACGTAATCGCGCTCACCAAGCAGG
TGCTGAAAGGCTCCCGGAGCTCCGAGCTGCTAGGTCAGGCAGCTCGAAACATGGTACTCCAGGA
AGATGCCATCTTGCACTCAGAAGATAGTTTAAGGAAGATGGCAATAATAACAACACATCTTCAA
TACCAGCAAGAAGCTATTCAGAAGAATGTTGAACAGTCATCGGATCTACAGGACCAGTTGAATC
ATCTGTTGAAATAGAATGACATTGGCTGCACTTCGTGACGCTGAGATACAGAAGGACGTGCAGA
CCTACTACGGGCAGGTGCTGAAGAGATCGGCAGACCTCCAGACCAACGGCTGTGTCACCACAGC
CAGGCCGGTCCCCAAGCACATCCGGGAAGCCTTGCAAAATGTACACGAAGAAGTAGCCCTAAGA
TATTATGGCTGTGGTCTGGTGATCCCTGAGCATCTAGAAAACTGCTGGATTTTGGATCTGGGTA
GTGGAAGTGGCAGAGATTGCTATGTACTTAGCCAGCTGGTTGGTGAAAAAGGACACGTGACTGG
AATAGACATGACCAAAGGCCAGGTGGAAGTGGCTGAAAAGTATCTTGACTATCACATGGAAAAA
TATGGCTTCCAGGCATCTAATGTGACTTTTATTCATGGCTACATTGAGAAGTTGGGAGAGGCTG
GAATCAAGAATGAGAGCCATGATATTGTTGTATCAAACTGTGTTATTAACCTTGTGCCTGATAA
ACAACAAGTGCTTCAGGAGGCATATCGGGTGCTGAAGCATGGTGGGGAGTTATATTTCAGTGAC
GTCTATACGAGCCTTGAACTGCCAGAAGAAATCAGGACACACAAAGTTTTATGGGGTGAGTGTC
TGGGTGGTGCTTTATACTGGAAGGAACTTGCTGTCCTTGCTCAAAAAATTGGGTTCTGCCCTCC
ACGTTTGGTCACTGCCAATCTCATTACAATTCAAAACAAGGAACTGGAAAGAGTTATCGGTGAC
TGTCGTTTTGTTTCTGCAACATTTCGCCTCTTCAAACACTCTAAGACAGGACCAACCAAGAGAT
GCCAAGTTATTTACAATGGAGGAATTACAGGACATGAAAAAGAACTAATGTTTGATGCCAATTT
TACATTTAAGGAAGGTGAAATTGTTGAAGTGGATGAAGAAACAGCAGCTATCTTGAAGAATTCA
AGATTTGCTCAAGATTTTCTGATCAGACCAATTGGAGAGAAGTTGCCAACATCTGGAGGCTGTT
CTGCTTTGGAGTTAAAGGATATAATCACAGATCCATTTAAGCTTGCAGAAGAGTCTGACAGTAT
GAAGTCCAGATGTGTCCCTGATGCTGCTGGAGGCTGCTGTGGCACAAAGAAAAGCTGCTAAATC
TATAGCCAACCAGGGGACCACAGTAGTGGGCAAGAGTGATCTGCATGTTTTTTAACCTGCTTTT
CCCCATAGCACAGACCATAAGAAACAACAAATGGGGCCGGGCACAGTGGCTCATGCCTATAATC
CCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTTGATACCAGCCTGGC
CAACATGGTGAAATCCTGTCTCTACCAAAAATACAAAAAAAATTAGCTGGGCATGGTGGTGCAC
ACCTATAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAAGTAGAGG
CTGCAGTGAGTAAGCATCACGCCACTGTACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCA
AAAGCAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAAGAAAACAACAAATGGCAGAGAGCCAC
CATATTCCAAATCACTGAAAAAAATAAATGAATTATTTTTATTTATTTATTTATTTTTTTGAGA
TGGAGTCTCGGTCTGTTGCCCAGGCTGAAGTGCAGTGGCCCCATCTCAACTCACTGCAAGCTCC
ACCTCCTGGGTTCACGCCATTCTCCTGCCTCAGACTCCCAAGTAGCTGGGACTACAGGCACCTA
CCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGA
TGGTCTTGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAG
CATGAGCCACTGCGCCCGGCCATAAATGAATTATTTTTAAGAGGCATTGATTAAAGATTCACAG
CAAATCACTAGTTAAGCAGATTTTTTTTCTATTTCCTACTTCAAAGTTCTGGTGCCACATAGTG
GTCAGAAATGGAACAGAGAAGCTGTCTTAAGCCTTGTTCAAGAAGCAGGAAAGGCATCAGAAGA
AGTAACAGTTGGCAGAGGGTCTCAGGAAAAACATCTTCCTTCTGATCTTTTGCATAGCACCTTT
TGGAATTTTCATCATGTTTGCTTATTAAACAAAGCTCCTACTGCCATCATACTAATCATGCAAA
AAGATTGCCAAATCATGTTTGGTAGGAGGACTTTTGAGGTAGCTTTTGAACAAATGTTTTTTTC
TTTTTTCTTTTTTTTTGCAATAAAGAAAACAAATTAATCATAAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	BORCS7-ASMT	COSMIC
GTEx	BORCS7-ASMT	GTEx
HGNC ID	HGNC:49183	ENTREZGENE
Human Proteome Map	BORCS7-ASMT	Human Proteome Map
NCBI Gene	C10orf32-ASMT	ENTREZGENE
RNAcentral	URS000075A20A	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-11	BORCS7-ASMT	BORCS7-ASMT readthrough (NMD candidate)	C10orf32-ASMT	C10orf32-ASMT readthrough (NMD candidate)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar