GWAS872339_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS872339_H (Pregn steroid monosulfate measurement QTL GWAS872339 (human)) Homo sapiens

Symbol: GWAS872339_H
Name: Pregn steroid monosulfate measurement QTL GWAS872339 (human)
RGD ID: 407223363
Trait: Pregn steroid monosulfate measurement
LOD Score: Not Available
P Value: 3.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810102,882,480 - 102,882,481RGD_MAPPER_PIPELINEGRCh38
GRCh3710104,642,237 - 104,642,238RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS872339_HHumanPregn steroid monosulfate measurement  IAGPrs72841270405850206 GWAS_CATALOGPMID:36357675
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7365766BORCS7-ASMTBORCS7-ASMT readthrough (NMD candidate)10102854210102901899Human
1350697AS3MTarsenite methyltransferase10102869470102901899Human

Position Markers

Peak: (rs72841270)
Human AssemblyChrPosition (strand)Source
GRCh3810102,882,480 - 102,882,481RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407212598GWAS861574_Hschizophrenia QTL GWAS861574 (human)6e-09schizophrenia10102882480102882481Human
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407223363GWAS872339_HPregn steroid monosulfate measurement QTL GWAS872339 (human)3e-16Pregn steroid monosulfate measurement10102882480102882481Human
407124435GWAS773411_Hbody height QTL GWAS773411 (human)3e-20body height (VT:0001253)body height (CMO:0000106)10102882480102882481Human
407147273GWAS796249_Hschizophrenia QTL GWAS796249 (human)2e-08schizophrenia10102882480102882481Human
406940911GWAS589887_Hprotein measurement QTL GWAS589887 (human)4e-15protein measurement10102882480102882481Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS589887_H GCST90247140 Cytosolic purine 5-nucleotidase levels 10,708 European ancestry individuals T 0.87 4E-15 14.398 rs72841270 0.143 protein measurement (EFO:0004747)
 PMID:34648354
GWAS773411_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 3E-20 19.523 rs72841270 N/A body height (EFO:0004339)
 PMID:30595370
GWAS796249_H GCST90020095 Schizophrenia (MTAG) 940,613 European ancestry individuals ? NR 2E-8 7.699 rs72841270 N/A PMID:34159505
GWAS861574_H GCST010640 Schizophrenia (MTAG) 67,764 individuals ? NR 6E-9 8.222 rs72841270 N/A PMID:32606422
GWAS872339_H GCST90245381 Pregn steroid monosulfate levels 14,296 European ancestry individuals T 0.8642 3E-16 15.523 rs72841270 0.12026201 Pregn steroid monosulfate measurement (EFO:0022104)
 PMID:36357675
None Available GCST90435412 Height 404,900 European ancestry individuals ? NR 2E-15 14.699 rs72841270 0.0201898 body height (EFO:0004339)
 PMID:39134668
Database Acc Id Source(s)
GWAS Catalog GCST90245381 GWAS Catalog

RGD Curation Notes
Note Type Note Reference