GWAS811708_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS811708_H (schizophrenia QTL GWAS811708 (human)) Homo sapiens

Symbol: GWAS811708_H
Name: schizophrenia QTL GWAS811708 (human)
RGD ID: 407162732
Trait: schizophrenia
LOD Score: Not Available
P Value: 4.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810102,866,129 - 102,866,130RGD_MAPPER_PIPELINEGRCh38
GRCh3710104,625,886 - 104,625,887RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS811708_HHumanschizophrenia  IAGPrs11191424405850206 GWAS_CATALOGPMID:28991256
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7365766BORCS7-ASMTBORCS7-ASMT readthrough (NMD candidate)10102854210102901899Human

Position Markers

Peak: (rs11191424)
Human AssemblyChrPosition (strand)Source
GRCh3810102,866,129 - 102,866,130RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407042742GWAS691718_Hschizophrenia, gastroesophageal reflux disease QTL GWAS691718 (human)1e-11schizophrenia, gastroesophageal reflux disease10102866129102866130Human
407304755GWAS953731_Hschizophrenia QTL GWAS953731 (human)3e-16schizophrenia10102866129102866130Human
407162732GWAS811708_Hschizophrenia QTL GWAS811708 (human)4e-20schizophrenia10102866129102866130Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS691718_H GCST90271339 Gastroesophageal reflux disease or schizophrenia (pleiotropy) 54,854 European ancestry gastroesophageal reflux disease cases, 40,675 European ancestry schizophrenia cases, 466,116 European ancestry controls ? NR 1E-11 11 rs11191424 N/A gastroesophageal reflux disease (EFO:0003948)
 PMID:36753304
GWAS811708_H GCST004946 Schizophrenia 7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls G NR 4E-20 19.398 rs11191424 1.0905125 PMID:28991256
GWAS953731_H GCST007201 Schizophrenia 14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls G NR 3E-16 15.523 rs11191424 1.0775862 PMID:30285260
Database Acc Id Source(s)
GWAS Catalog GCST004946 GWAS Catalog

RGD Curation Notes
Note Type Note Reference