GWAS865045_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS865045_H (mean corpuscular volume QTL GWAS865045 (human)) Homo sapiens

Symbol: GWAS865045_H
Name: mean corpuscular volume QTL GWAS865045 (human)
RGD ID: 407216069
Trait: mean corpuscular volume
Measurement Type: mean corpuscular volume   (CMO:0000038)    
LOD Score: Not Available
P Value: 9.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810102,883,090 - 102,883,091RGD_MAPPER_PIPELINEGRCh38
GRCh3710104,642,847 - 104,642,848RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS865045_HHumanmean corpuscular volume  IAGPrs202100735405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS865045_HHumanmean corpuscular volume  IAGPrs202100735405850206 GWAS_CATALOGPMID:32888493
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7365766BORCS7-ASMTBORCS7-ASMT readthrough (NMD candidate)10102854210102901899Human
1350697AS3MTarsenite methyltransferase10102869470102901899Human

Position Markers

Peak: (rs202100735)
Human AssemblyChrPosition (strand)Source
GRCh3810102,883,090 - 102,883,091RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407216069GWAS865045_Hmean corpuscular volume QTL GWAS865045 (human)9e-16mean corpuscular volumemean corpuscular volume (CMO:0000038)10102883090102883091Human
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS865045_H GCST90002335 Mean corpuscular volume 121,047 East Asian ancestry individuals A 0.8651 9E-16 15.046 rs202100735 0.062517 mean corpuscular volume (EFO:0004526)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90002335 GWAS Catalog

RGD Curation Notes
Note Type Note Reference