GWAS879102_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS879102_H (X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement QTL GWAS879102 (human)) Homo sapiens

Symbol: GWAS879102_H
Name: X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement QTL GWAS879102 (human)
RGD ID: 407230126
Trait: X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement
LOD Score: Not Available
P Value: 6.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810102,877,098 - 102,877,099RGD_MAPPER_PIPELINEGRCh38
GRCh3710104,636,855 - 104,636,856RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS879102_HHumanX-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement  IAGPrs3740392405850206 GWAS_CATALOGPMID:35347128
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7365766BORCS7-ASMTBORCS7-ASMT readthrough (NMD candidate)10102854210102901899Human
1350697AS3MTarsenite methyltransferase10102869470102901899Human

Position Markers

Peak: (rs3740392)
Human AssemblyChrPosition (strand)Source
GRCh3810102,877,098 - 102,877,099RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407230126GWAS879102_HX-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement QTL GWAS879102 (human)6e-11X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement10102877098102877099Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS879102_H GCST90139816 5alpha-pregnan-3beta,20alpha-diol disulfate levels 6,136 Finnish ancestry individuals C NR 6E-11 10.222 rs3740392 0.15 X-11445--5-alpha-pregnan-3beta,20alpha-disulfate measurement (EFO:0021238)
 PMID:35347128
Database Acc Id Source(s)
GWAS Catalog GCST90139816 GWAS Catalog

RGD Curation Notes
Note Type Note Reference