GWAS812939_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS812939_H (erythrocyte measurement QTL GWAS812939 (human)) Homo sapiens

Symbol: GWAS812939_H
Name: erythrocyte measurement QTL GWAS812939 (human)
RGD ID: 407163963
Trait: erythrocyte measurement
Measurement Type: red blood cell measurement   (CMO:0001356)    
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3810102,878,107 - 102,878,108RGD_MAPPER_PIPELINEGRCh38
GRCh3710104,637,864 - 104,637,865RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS812939_HHumanred blood cell measurement  IAGPrs11191438405850206Based on the EFO term IDGWAS_CATALOGPMID:37596262

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS812939_HHumanerythrocyte measurement  IAGPrs11191438405850206 GWAS_CATALOGPMID:37596262
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7365766BORCS7-ASMTBORCS7-ASMT readthrough (NMD candidate)10102854210102901899Human
1350697AS3MTarsenite methyltransferase10102869470102901899Human

Position Markers

Peak: (rs11191438)
Human AssemblyChrPosition (strand)Source
GRCh3810102,878,107 - 102,878,108RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407163963GWAS812939_Herythrocyte measurement QTL GWAS812939 (human)3e-12erythrocyte measurementred blood cell measurement (CMO:0001356)10102878107102878108Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS812939_H GCST90281221 Reticulocyte production index 39,566 European ancestry individuals C 0.3972 3E-12 11.523 rs11191438 0.0495792 erythrocyte measurement (EFO:0005047)
 PMID:37596262
Database Acc Id Source(s)
GWAS Catalog GCST90281221 GWAS Catalog

RGD Curation Notes
Note Type Note Reference