RNU2-59P (RNA, U2 small nuclear 59, pseudogene) - Rat Genome Database

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Gene: RNU2-59P (RNA, U2 small nuclear 59, pseudogene) Homo sapiens
Analyze
Symbol: RNU2-59P
Name: RNA, U2 small nuclear 59, pseudogene
RGD ID: 10399800
HGNC Page HGNC:48552
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU2-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810101,364,850 - 101,365,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10101,364,845 - 101,365,035 (-)EnsemblGRCh38hg38GRCh38
GRCh3710103,124,607 - 103,124,792 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q24.32NCBI
CHM1_110103,408,484 - 103,408,669 (-)NCBICHM1_1
T2T-CHM13v2.010102,248,811 - 102,248,996 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENST00000410482
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High 2
Medium 10 8 2 54 2 1 5 4 28 6
Low 69 13 116 67 123 67 49 4 44 109 137 128 7 13
Below cutoff 68 70 92 49 55 47 206 52 124 51 74 52 2 70 99

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10101,364,845 - 101,365,035 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU2-59P COSMIC
Ensembl Genes ENSG00000222414 Ensembl, ENTREZGENE
GTEx ENSG00000222414 GTEx
HGNC ID HGNC:48552 ENTREZGENE
Human Proteome Map RNU2-59P Human Proteome Map
NCBI Gene RNU2-59P ENTREZGENE