RPL34P20 (ribosomal protein L34 pseudogene 20) - Rat Genome Database

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Gene: RPL34P20 (ribosomal protein L34 pseudogene 20) Homo sapiens
Analyze
Symbol: RPL34P20
Name: ribosomal protein L34 pseudogene 20
RGD ID: 2304836
HGNC Page HGNC:35535
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL34_8_1088
Related Functional Gene: RPL34  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,393,174 - 97,393,582 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,393,197 - 97,393,547 (-)EnsemblGRCh38hg38GRCh38
GRCh371099,152,931 - 99,153,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,152,955 - 99,153,303 (-)NCBINCBI36Build 36hg18NCBI36
Celera1092,891,114 - 92,891,462 (-)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,778,468 - 92,778,816 (-)NCBIHuRef
CHM1_11099,434,623 - 99,434,971 (-)NCBICHM1_1
T2T-CHM13v2.01098,273,362 - 98,273,770 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:195
Interacting mature miRNAs:200
Transcripts:ENST00000442771
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 5 2
Low 18 37 16 4 113 7 92 9 13 10 30 25 6 17
Below cutoff 263 409 201 51 335 38 593 198 413 47 217 210 16 140 302 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000442771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1097,393,197 - 97,393,547 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL34P20 COSMIC
Ensembl Genes ENSG00000231508 Ensembl, ENTREZGENE
GTEx ENSG00000231508 GTEx
HGNC ID HGNC:35535 ENTREZGENE
Human Proteome Map RPL34P20 Human Proteome Map
NCBI Gene 100271308 ENTREZGENE