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ONTOLOGY REPORT - ANNOTATIONS

Term:collagen-containing extracellular matrix
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Accession:GO:0062023 term browser browse the term
Definition:An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.
Synonyms:only_in_taxon: NCBITaxon:33208 ! Metazoa

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collagen-containing extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:15777654 RGD:9681749 NCBI chrNW_004955407:26,524,487...26,533,038
Ensembl chrNW_004955407:26,524,130...26,533,038 		JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif 10 located_in ISO (PMID:21402694) UniProt PMID:21402694 NCBI chrNW_004955563:861,355...878,633
Ensembl chrNW_004955563:861,349...878,633 		JBrowse link
G Agrn agrin located_in ISO (PMID:17628813) UniProt PMID:17628813 NCBI chrNW_004955486:9,674,103...9,704,994
Ensembl chrNW_004955486:9,675,214...9,704,991 		JBrowse link
G Ahsg alpha 2-HS glycoprotein ISO RGD PMID:7794128 RGD:1626075 NCBI chrNW_004955420:21,071,111...21,078,397
Ensembl chrNW_004955420:21,069,681...21,078,298 		JBrowse link
G Amelx amelogenin X-linked located_in ISO (PMID:2509010) BHF-UCL PMID:2509010 NCBI chrNW_004955544:1,974,889...1,979,063
Ensembl chrNW_004955544:1,969,216...1,979,063 		JBrowse link
G Bglap bone gamma-carboxyglutamate protein located_in ISO (PMID:8101026), (PMID:8218200) CAFA PMID:8101026 PMID:8218200 NCBI chrNW_004955545:2,381,091...2,382,114
Ensembl chrNW_004955545:2,381,156...2,381,978 		JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO RGD PMID:9626398 RGD:2289041 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Calr calreticulin ISO RGD PMID:12782144 RGD:2326184 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372 		JBrowse link
G Ccn3 cellular communication network factor 3 ISO RGD PMID:19286457 RGD:2306292 NCBI chrNW_004955417:25,218,613...25,225,755 JBrowse link
G Chadl chondroadherin like located_in ISO (PMID:25451920)
(MGI:5617405|PMID:25451920)		 UniProt PMID:25451920 MGI:5617405 NCBI chrNW_004955413:26,846,714...26,862,082
Ensembl chrNW_004955413:26,851,420...26,862,081 		JBrowse link
G Cilp cartilage intermediate layer protein located_in ISO (PMID:9722583) BHF-UCL PMID:9722583 NCBI chrNW_004955450:10,231,082...10,244,632
Ensembl chrNW_004955450:10,232,641...10,245,945 		JBrowse link
G Coch cochlin located_in ISO (PMID:22610276) UniProt PMID:22610276 NCBI chrNW_004955409:29,639,274...29,650,389
Ensembl chrNW_004955409:29,639,274...29,650,874 		JBrowse link
G Col10a1 collagen type X alpha 1 chain located_in ISO (PMID:17876790) RGD
ComplexPortal		 PMID:7649371 PMID:17876790 RGD:1298775 NCBI chrNW_004955526:641,577...679,295 JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO RGD PMID:17062562 RGD:1600882 NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235 		JBrowse link
G Col1a1 collagen type I alpha 1 chain located_in ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004955451:11,468,156...11,484,410
Ensembl chrNW_004955451:11,468,290...11,483,073 		JBrowse link
G Col1a2 collagen type I alpha 2 chain located_in ISO (PMID:34368841) MGI PMID:34368841 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302 		JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO RGD PMID:7649371 RGD:1298775 NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473 		JBrowse link
G Col3a1 collagen type III alpha 1 chain located_in ISO (PMID:14970208), (PMID:7487954) RGD
UniProt		 PMID:7487954 PMID:14970208 PMID:20610530 RGD:7257557 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
G Col5a1 collagen type V alpha 1 chain located_in ISO (PMID:14970208) UniProt PMID:14970208 NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161 		JBrowse link
G Col5a3 collagen type V alpha 3 chain ISO RGD PMID:15383532 RGD:5683638 NCBI chrNW_004955495:1,347,171...1,386,683 JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO RGD PMID:11121438 RGD:1599784 NCBI chrNW_004955477:863,388...899,703 JBrowse link
G Dspp dentin sialophosphoprotein ISO RGD PMID:16776771 RGD:1599799 NCBI chrNW_004955474:2,254,842...2,259,303 JBrowse link
G Ecm1 extracellular matrix protein 1 located_in ISO (PMID:20870722) UniProt PMID:20870722 NCBI chrNW_004955413:293,295...299,293
Ensembl chrNW_004955413:290,363...299,130 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 located_in ISO (PMID:26462740) UniProt PMID:26462740 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
G F2 coagulation factor II, thrombin ISO RGD PMID:21191574 RGD:7387308 NCBI chrNW_004955422:1,356,675...1,367,788
Ensembl chrNW_004955422:1,356,769...1,367,517 		JBrowse link
G F3 coagulation factor III, tissue factor located_in ISO (PMID:2704749) BHF-UCL PMID:2704749 NCBI chrNW_004955423:254,060...264,448
Ensembl chrNW_004955423:254,189...264,159 		JBrowse link
G Fbln5 fibulin 5 located_in ISO (PMID:17035250)
(MGI:3610795|PMID:15528465)		 UniProt
BHF-UCL		 PMID:15528465 PMID:17035250 MGI:3610795 NCBI chrNW_004955438:14,073,927...14,144,644
Ensembl chrNW_004955438:14,071,410...14,145,070 		JBrowse link
G Fbn1 fibrillin 1 located_in ISO (MGI:5795811|PMID:24039232), (PMID:17099216) RGD
UniProt		 PMID:15849235 PMID:17099216 PMID:24039232 MGI:5795811 RGD:1601147 NCBI chrNW_004955409:5,281,603...5,502,547
Ensembl chrNW_004955409:5,281,603...5,504,761 		JBrowse link
G Fgf10 fibroblast growth factor 10 located_in ISO (PMID:17959718) UniProt PMID:17959718 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 located_in ISO (PMID:17959718) UniProt PMID:17959718 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fmod fibromodulin ISO RGD PMID:12941075 RGD:2315082 NCBI chrNW_004955406:39,328,743...39,340,113
Ensembl chrNW_004955406:39,328,743...39,340,258 		JBrowse link
G Fn1 fibronectin 1 located_in ISO (PMID:16157329), (PMID:1632457)
(PMID:34368841)		 UniProt
MGI		 PMID:1632457 PMID:16157329 PMID:34368841 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:15497505 RGD:2316936 NCBI chrNW_004955538:1,469,544...1,475,010
Ensembl chrNW_004955538:1,469,544...1,475,019 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 ISO RGD PMID:15928048 RGD:1624263 NCBI chrNW_004955452:2,056,428...2,141,937
Ensembl chrNW_004955452:2,057,326...2,120,280 		JBrowse link
G Htra1 HtrA serine peptidase 1 ISO dentin matrix RGD PMID:22595117 RGD:7394756 NCBI chrNW_004955477:761,127...808,396
Ensembl chrNW_004955477:761,127...808,994 		JBrowse link
G Lamb1 laminin subunit beta 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamc1 laminin subunit gamma 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chrNW_004955406:21,863,836...21,990,161
Ensembl chrNW_004955406:21,863,836...21,992,199 		JBrowse link
G Lrrc15 leucine rich repeat containing 15 located_in ISO (PMID:16098915) UniProt PMID:16098915 NCBI chrNW_004955420:14,401,080...14,410,277
Ensembl chrNW_004955420:14,407,926...14,409,656 		JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 located_in ISO (PMID:16157329) RGD
UniProt		 PMID:9766531 PMID:16157329 RGD:10412061 NCBI chrNW_004955441:1,405,340...1,626,668
Ensembl chrNW_004955441:1,232,041...1,627,470 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 located_in ISO (PMID:16157329) UniProt PMID:16157329 NCBI chrNW_004955422:19,714,161...19,730,344
Ensembl chrNW_004955422:19,714,627...19,729,855 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 located_in ISO (PMID:16157329) UniProt PMID:16157329 NCBI chrNW_004955578:685,960...712,809
Ensembl chrNW_004955578:686,211...712,794 		JBrowse link
G Matn2 matrilin 2 located_in ISO (MGI:1336568|PMID:10224097) ComplexPortal PMID:10224097 MGI:1336568 NCBI chrNW_004955417:13,646,379...13,760,050
Ensembl chrNW_004955417:13,646,405...13,759,520 		JBrowse link
G Matn3 matrilin 3 located_in ISO (MGI:1353153|PMID:10660556) ComplexPortal PMID:10660556 MGI:1353153 NCBI chrNW_004955469:2,548,443...2,568,497
Ensembl chrNW_004955469:2,548,443...2,568,497 		JBrowse link
G Matn4 matrilin 4 located_in ISO (MGI:1934728|PMID:11279097) ComplexPortal PMID:11279097 MGI:1934728 NCBI chrNW_004955445:12,027,626...12,040,589
Ensembl chrNW_004955445:12,029,882...12,040,335 		JBrowse link
G Mfap4 microfibril associated protein 4 located_in ISO (PMID:26601954) UniProt PMID:26601954 NCBI chrNW_004955467:378,389...381,593
Ensembl chrNW_004955467:377,887...381,593 		JBrowse link
G Mgp matrix Gla protein ISO RGD PMID:11716499 RGD:2293597 NCBI chrNW_004955413:11,614,851...11,618,090
Ensembl chrNW_004955413:11,615,078...11,618,024 		JBrowse link
G Mmrn1 multimerin 1 located_in ISO (PMID:9454761) ComplexPortal PMID:9454761 NCBI chrNW_004955405:1,043,661...1,092,862
Ensembl chrNW_004955405:1,043,656...1,095,321 		JBrowse link
G Mmrn2 multimerin 2 located_in ISO (PMID:23979707) ComplexPortal PMID:23979707 NCBI chrNW_004955510:5,943,126...5,957,679
Ensembl chrNW_004955510:5,945,043...5,958,352 		JBrowse link
G Myoc myocilin located_in ISO (PMID:11773026) UniProt PMID:11773026 NCBI chrNW_004955406:12,182,115...12,194,683
Ensembl chrNW_004955406:12,182,046...12,199,669 		JBrowse link
G Ndp norrin cystine knot growth factor NDP located_in ISO (PMID:15035989)
(MGI:3621833|PMID:15035989)		 BHF-UCL PMID:15035989 MGI:3621833 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Npnt nephronectin located_in ISO (MGI:4947862|PMID:21335239) BHF-UCL PMID:21335239 MGI:4947862 NCBI chrNW_004955496:3,321,310...3,388,625
Ensembl chrNW_004955496:3,320,946...3,388,694 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 located_in ISO (PMID:12535616) BHF-UCL PMID:12535616 NCBI chrNW_004955416:28,184,768...28,314,697
Ensembl chrNW_004955416:28,184,768...28,314,759 		JBrowse link
G Plat plasminogen activator, tissue type NOT|located_in ISO (PMID:1632457) BHF-UCL PMID:1632457 NCBI chrNW_004955536:730,962...754,333
Ensembl chrNW_004955536:730,981...756,394 		JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 located_in ISO (PMID:27435297) MGI PMID:27435297 NCBI chrNW_004955456:16,082,424...16,090,773
Ensembl chrNW_004955456:16,082,437...16,093,389 		JBrowse link
G Plscr1 phospholipid scramblase 1 located_in ISO (PMID:20870722) UniProt PMID:20870722 NCBI chrNW_004955474:10,953,381...10,989,100 JBrowse link
G Podnl1 podocan like 1 located_in ISO (MGI:5784978|PMID:21672516) UniProt PMID:21672516 MGI:5784978 NCBI chrNW_004955415:32,683,256...32,688,736
Ensembl chrNW_004955415:32,683,414...32,688,586 		JBrowse link
G Postn periostin located_in ISO (PMID:18450759)
(MGI:3804342|PMID:18450759)		 UniProt PMID:18450759 MGI:3804342 NCBI chrNW_004955431:8,510,646...8,544,901
Ensembl chrNW_004955431:8,510,624...8,544,971 		JBrowse link
G Pxdn peroxidasin located_in ISO (PMID:19590037)
(MGI:3851833|PMID:19590037)		 UniProt PMID:19590037 MGI:3851833 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 located_in ISO (PMID:19443732) GO_Central PMID:19443732 NCBI chrNW_004955491:4,954,809...4,957,724
Ensembl chrNW_004955491:4,955,068...4,956,956 		JBrowse link
G Rpsa ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chrNW_004955420:29,978,160...29,983,544 JBrowse link
G Serpine1 serpin family E member 1 located_in ISO (PMID:1632457) BHF-UCL PMID:1632457 NCBI chrNW_004955456:16,147,523...16,157,040
Ensembl chrNW_004955456:16,145,944...16,157,142 		JBrowse link
G Serpine2 serpin family E member 2 located_in ISO (PMID:3279057) BHF-UCL PMID:3279057 NCBI chrNW_004955453:10,049,822...10,076,155
Ensembl chrNW_004955453:10,027,104...10,076,645 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 located_in ISO (PMID:10347172), (PMID:9192640) BHF-UCL PMID:9192640 PMID:10347172 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 located_in ISO (PMID:14709558) BHF-UCL PMID:14709558 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321 		JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation located_in ISO (MGI:6103145|PMID:28323137) UniProt PMID:28323137 MGI:6103145 NCBI chrNW_004955453:3,187,624...3,192,605
Ensembl chrNW_004955453:3,187,672...3,191,662 		JBrowse link
G Sod3 superoxide dismutase 3 located_in ISO (MGI:3610795|PMID:15528465)
(PMID:9699963)		 RGD
BHF-UCL
UniProt		 PMID:9699963 PMID:15528465 PMID:16372329 MGI:3610795 RGD:1581086 NCBI chrNW_004955480:257,716...263,149 JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains located_in ISO (MGI:4939978|PMID:21217009) UniProt PMID:21217009 MGI:4939978 NCBI chrNW_004955567:789,396...809,597
Ensembl chrNW_004955567:789,182...809,636 		JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:24224514 RGD:11073670 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tgfb2 transforming growth factor beta 2 located_in ISO (PMID:18049952) BHF-UCL PMID:18049952 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgfb3 transforming growth factor beta 3 located_in ISO (PMID:18049952) BHF-UCL PMID:18049952 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180 		JBrowse link
G Tgm4 transglutaminase 4 located_in ISO (PMID:20596668) UniProt PMID:20596668 NCBI chrNW_004955420:26,736,880...26,766,386
Ensembl chrNW_004955420:26,737,533...26,766,386 		JBrowse link
G Thbs4 thrombospondin 4 located_in ISO (MGI:5436396|PMID:22362893) UniProt PMID:22362893 MGI:5436396 NCBI chrNW_004955425:21,072,873...21,117,061
Ensembl chrNW_004955425:21,069,855...21,117,061 		JBrowse link
G Tnc tenascin C located_in ISO (PMID:23658023)
(MGI:5582867|PMID:23658023)		 ComplexPortal PMID:23658023 MGI:5582867 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
G Tnn tenascin N located_in ISO (PMID:19884327)
(MGI:3028459|PMID:14709716)		 ComplexPortal PMID:14709716 PMID:19884327 MGI:3028459 NCBI chrNW_004955406:14,882,414...14,950,572
Ensembl chrNW_004955406:14,882,245...14,950,587 		JBrowse link
G Tnr tenascin R located_in ISO (MGI:6830496|PMID:8244531) ComplexPortal PMID:8244531 MGI:6830496 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937 		JBrowse link
G Vcan versican ISO RGD PMID:12586779 RGD:1299255 NCBI chrNW_004955418:26,967,595...27,078,430 JBrowse link
G Vtn vitronectin located_in ISO (PMID:1632457) RGD
BHF-UCL		 PMID:1632457 PMID:2426279 RGD:10003088 NCBI chrNW_004955481:4,765,078...4,768,027
Ensembl chrNW_004955481:4,765,193...4,771,019 		JBrowse link
G Vwf von Willebrand factor located_in ISO (PMID:6754744) RGD
UniProt		 PMID:6754744 PMID:14762664 RGD:1599021 NCBI chrNW_004955413:3,672,470...3,825,588
Ensembl chrNW_004955413:3,672,470...3,819,571 		JBrowse link
G Wnt2 Wnt family member 2 located_in ISO (PMID:15507471) UniProt PMID:15507471 NCBI chrNW_004955432:22,988,208...23,024,530
Ensembl chrNW_004955432:22,984,170...23,027,705 		JBrowse link
G Zg16 zymogen granule protein 16 located_in ISO (PMID:17307141) UniProt PMID:17307141 NCBI chrNW_004955493:7,183,096...7,201,750
Ensembl chrNW_004955493:7,181,555...7,184,589 		JBrowse link
G Zp2 zona pellucida glycoprotein 2 located_in ISO (MGI:2177349|PMID:11906903) UniProt PMID:11906903 MGI:2177349 NCBI chrNW_004955493:400,868...412,660
Ensembl chrNW_004955493:400,868...412,596 		JBrowse link
G Zp3 zona pellucida glycoprotein 3 located_in ISO (PMID:19246320)
(MGI:2177349|PMID:11906903), (MGI:4943662|PMID:19052627)		 UniProt PMID:11906903 PMID:19052627 PMID:19246320 MGI:2177349 MGI:4943662 NCBI chrNW_004955456:15,013,472...15,020,809 JBrowse link
basement membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan located_in ISO (PMID:16061471) MGI PMID:16061471 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Ache acetylcholinesterase (Cartwright blood group) located_in ISO (PMID:7885444) MGI PMID:7885444 NCBI chrNW_004955573:79,606...85,799
Ensembl chrNW_004955573:80,298...85,799 		JBrowse link
G Acta2 actin alpha 2, smooth muscle ISO MMO:0000538 RGD PMID:30476341 RGD:151893502 NCBI chrNW_004955425:4,023,001...4,039,980
Ensembl chrNW_004955425:4,026,430...4,040,747 		JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 located_in ISO (PMID:16061471) MGI PMID:16061471 NCBI chrNW_004955407:26,524,487...26,533,038
Ensembl chrNW_004955407:26,524,130...26,533,038 		JBrowse link
G Agrn agrin located_in IDA
ISO		 (PMID:18757743), (PMID:7670489)
(PMID:9405491)		 MGI
RGD
UniProt		 PMID:7670489 PMID:9405491 PMID:18757743 PMID:11470186 (All species) (All species), RGD:11556219 NCBI chrNW_004955486:9,674,103...9,704,994
Ensembl chrNW_004955486:9,675,214...9,704,991 		JBrowse link
G Alb albumin ISO RGD PMID:1723977 RGD:1625719 NCBI chrNW_004955447:9,327...21,212 JBrowse link
G Amelx amelogenin X-linked located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955544:1,974,889...1,979,063
Ensembl chrNW_004955544:1,969,216...1,979,063 		JBrowse link
G Amtn amelotin located_in ISO PMID:16787391
(MGI:3696589|PMID:16787391)		 HGNC-UCL PMID:16787391 MGI:3696589 RGD:2304068 NCBI chrNW_004955447:2,422,189...2,433,633
Ensembl chrNW_004955447:2,423,136...2,433,150 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase part_of
located_in		 ISO (PMID:18664494)
(MGI:3810856|PMID:18664494)		 CACAO
BHF-UCL		 PMID:18664494 MGI:3810856 NCBI chrNW_004955565:879,560...1,242,727
Ensembl chrNW_004955565:879,830...1,237,692 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955427:12,945,230...12,975,020
Ensembl chrNW_004955427:12,945,230...12,975,114 		JBrowse link
G Cd151 CD151 molecule (Raph blood group) part_of ISO (PMID:23302890) CACAO PMID:23302890 NCBI chrNW_004955476:11,294,359...11,298,990
Ensembl chrNW_004955476:11,294,359...11,337,825 		JBrowse link
G Col15a1 collagen type XV alpha 1 chain located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955419:26,577,172...26,687,750
Ensembl chrNW_004955419:26,574,835...26,687,803 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain located_in ISO (PMID:12588956), (PMID:15254016), (PMID:18757743), (PMID:19651211), (PMID:7568013) MGI PMID:7568013 PMID:12588956 PMID:15254016 PMID:18757743 PMID:19651211 NCBI chrNW_004955407:42,091,211...42,131,343
Ensembl chrNW_004955407:42,091,211...42,131,343 		JBrowse link
G Col28a1 collagen type XXVIII alpha 1 chain located_in ISO (PMID:16330543), (PMID:20830809) MGI PMID:16330543 PMID:20830809 NCBI chrNW_004955432:14,462,226...14,634,396
Ensembl chrNW_004955432:14,462,226...14,633,236 		JBrowse link
G Col2a1 collagen type II alpha 1 chain located_in ISO (PMID:11273670) MGI PMID:11273670 NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain located_in ISO (MGI:3776221|PMID:16041630), (PMID:11511678), (PMID:11732842), (PMID:15895400), (PMID:18757743) UniProt PMID:11511678 PMID:11732842 PMID:15895400 PMID:16041630 PMID:18757743 MGI:3776221 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain located_in IDA
ISO		 (MGI:3776221|PMID:16041630), (PMID:11732842), (PMID:18757743) MGI
RGD		 PMID:11732842 PMID:16041630 PMID:18757743 PMID:11470186 MGI:3776221 (All species) (All species), RGD:11556219 NCBI chrNW_004955404:2,092,184...2,178,079
Ensembl chrNW_004955404:2,092,184...2,178,079 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain located_in ISO (PMID:10766752)
(MGI:3776221|PMID:16041630), (PMID:11732842), (PMID:18757743)		 UniProt
MGI		 PMID:10766752 PMID:11732842 PMID:16041630 PMID:18757743 MGI:3776221 NCBI chrNW_004955453:7,261,278...7,351,414 JBrowse link
G Col4a4 collagen type IV alpha 4 chain located_in ISO (PMID:2211832)
(PMID:10534397), (PMID:11732842), (PMID:19275937), (PMID:9264260)		 UniProt
MGI		 PMID:2211832 PMID:9264260 PMID:10534397 PMID:11732842 PMID:19275937 NCBI chrNW_004955453:7,405,167...7,524,038
Ensembl chrNW_004955453:7,420,203...7,520,200 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain located_in ISO (PMID:10534397), (PMID:11732842), (PMID:18757743), (PMID:19275937), (PMID:7885444), (PMID:9264260) MGI PMID:7885444 PMID:9264260 PMID:10534397 PMID:11732842 PMID:18757743 More... NCBI chrNW_004955490:7,168,725...7,409,655
Ensembl chrNW_004955490:7,168,676...7,409,887 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain located_in ISO (PMID:10534397), (PMID:11732842), (PMID:18757743), (PMID:19275937) MGI PMID:10534397 PMID:11732842 PMID:18757743 PMID:19275937 NCBI chrNW_004955490:7,409,687...7,764,300
Ensembl chrNW_004955490:7,409,160...7,762,929 		JBrowse link
G Col5a1 collagen type V alpha 1 chain located_in ISO (PMID:14676276) MGI PMID:14676276 NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain is_active_in ISO (PMID:31837950) MGI PMID:31837950 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain located_in ISO (PMID:18757743), (PMID:19651211) MGI PMID:18757743 PMID:19651211 NCBI chrNW_004955532:650,913...681,186 JBrowse link
G Cst3 cystatin C ISO RGD PMID:15872057 RGD:2306505 NCBI chrNW_004955415:30,507,972...30,512,109 JBrowse link
G Dag1 dystroglycan 1 located_in ISO (PMID:19348877)
(PMID:11798066), (PMID:23217742), (PMID:9524190)		 UniProt
MGI		 PMID:9524190 PMID:11798066 PMID:19348877 PMID:23217742 NCBI chrNW_004955532:1,446,553...1,465,310
Ensembl chrNW_004955532:1,397,900...1,466,312 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 located_in ISO (PMID:24191021) MGI PMID:24191021 NCBI chrNW_004955420:13,068,289...13,273,805
Ensembl chrNW_004955420:13,068,289...13,273,805 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO RGD PMID:18803302 RGD:10401659 NCBI chrNW_004955424:27,181,717...27,240,067
Ensembl chrNW_004955424:27,181,099...27,240,446 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 located_in ISO (MGI:3709425|PMID:17324935) UniProt PMID:17324935 MGI:3709425 NCBI chrNW_004955422:19,463,090...19,470,605
Ensembl chrNW_004955422:19,463,987...19,470,605 		JBrowse link
G Efna5 ephrin A5 located_in ISO (PMID:23242526) MGI PMID:23242526 NCBI chrNW_004955418:6,919,270...7,188,561
Ensembl chrNW_004955418:6,920,919...7,185,478 		JBrowse link
G Egfl6 EGF like domain multiple 6 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955519:4,557,007...4,616,095
Ensembl chrNW_004955519:4,556,610...4,616,296 		JBrowse link
G Egflam EGF like, fibronectin type III and laminin G domains located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955426:22,856,515...23,030,517
Ensembl chrNW_004955426:22,856,186...23,031,029 		JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 located_in ISO (PMID:11929769) MGI PMID:11929769 NCBI chrNW_004955507:2,035,918...2,141,327
Ensembl chrNW_004955507:2,036,050...2,137,377 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 located_in ISO (PMID:11929769) MGI PMID:11929769 NCBI chrNW_004955513:5,070,050...5,075,098
Ensembl chrNW_004955513:5,068,875...5,075,098 		JBrowse link
G Fbln1 fibulin 1 located_in ISO (PMID:16061471) MGI PMID:16061471 NCBI chrNW_004955413:29,837,134...29,911,313
Ensembl chrNW_004955413:29,837,134...29,912,222 		JBrowse link
G Fbn1 fibrillin 1 located_in ISO (PMID:3536967) UniProt PMID:3536967 NCBI chrNW_004955409:5,281,603...5,502,547
Ensembl chrNW_004955409:5,281,603...5,504,761 		JBrowse link
G Fgf9 fibroblast growth factor 9 ISO ovarian granulosa cells and follicles; seminiferous tubules RGD PMID:17494997 RGD:2289861 NCBI chrNW_004955497:2,199,424...2,232,088
Ensembl chrNW_004955497:2,199,409...2,235,893 		JBrowse link
G Fn1 fibronectin 1 located_in ISO (PMID:11511678), (PMID:24191021), (PMID:8984825) RGD
MGI		 PMID:8984825 PMID:11511678 PMID:14656002 PMID:24191021 RGD:1578551 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975 		JBrowse link
G Fras1 Fraser extracellular matrix complex subunit 1 located_in ISO (MGI:3697950|PMID:17251066), (MGI:3797592|PMID:15623520), (PMID:15345741), (PMID:16880404), (PMID:17596926), (PMID:18757743) MGI PMID:15345741 PMID:15623520 PMID:16880404 PMID:17251066 PMID:17596926 More... MGI:3697950 MGI:3797592 NCBI chrNW_004955433:2,547,228...2,957,294
Ensembl chrNW_004955433:2,547,323...2,957,495 		JBrowse link
G Frem1 FRAS1 related extracellular matrix 1 located_in ISO (MGI:3697950|PMID:17251066), (PMID:16880404), (PMID:17596926), (PMID:18757743) MGI PMID:16880404 PMID:17251066 PMID:17596926 PMID:18757743 MGI:3697950 NCBI chrNW_004955434:17,754,002...17,901,416
Ensembl chrNW_004955434:17,753,925...17,901,407 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 located_in ISO (MGI:3697950|PMID:17251066), (PMID:16880404), (PMID:17596926) MGI PMID:16880404 PMID:17251066 PMID:17596926 MGI:3697950 NCBI chrNW_004955431:7,364,937...7,541,419
Ensembl chrNW_004955431:7,364,937...7,541,648 		JBrowse link
G Hmcn1 hemicentin 1 located_in ISO (MGI:6368983|PMID:29488390), (MGI:6432649|PMID:32035013), (MGI:6762317|PMID:34504132), (PMID:17015624) UniProt PMID:17015624 PMID:29488390 PMID:32035013 PMID:34504132 MGI:6368983 MGI:6432649 MGI:6762317 NCBI chrNW_004955406:24,229,666...24,623,341
Ensembl chrNW_004955406:24,229,973...24,622,314 		JBrowse link
G Hmcn2 hemicentin 2 located_in ISO (PMID:17015624) MGI PMID:17015624 NCBI chrNW_004955513:303,490...434,207 JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 located_in IDA
ISO		 (PMID:10352025), (PMID:10579729), (PMID:11787818), (PMID:11802174), (PMID:12588956), (PMID:15381701), (PMID:15895400), (PMID:15928325), (PMID:18757743), (PMID:7670489) MGI
RGD		 PMID:7670489 PMID:10352025 PMID:10579729 PMID:11787818 PMID:11802174 More... (All species) (All species), RGD:11556219 NCBI chrNW_004955452:2,056,428...2,141,937
Ensembl chrNW_004955452:2,057,326...2,120,280 		JBrowse link
G Itga6 integrin subunit alpha 6 located_in ISO (PMID:9524190) MGI PMID:9524190 NCBI chrNW_004955449:2,590,982...2,665,887
Ensembl chrNW_004955449:2,590,982...2,665,887 		JBrowse link
G Itgb1 integrin subunit beta 1 ISO RGD PMID:9202984 PMID:18596883 RGD:1581320 RGD:2325689 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842 		JBrowse link
G Itgb4 integrin subunit beta 4 located_in ISO (PMID:17011173) MGI PMID:17011173 NCBI chrNW_004955506:6,493,466...6,526,778
Ensembl chrNW_004955506:6,493,466...6,526,778 		JBrowse link
G Lama1 laminin subunit alpha 1 located_in ISO (PMID:10964500), (PMID:2099832)
(MGI:3610934|PMID:12631063), (MGI:4441265|PMID:16631359), (PMID:10639489), (PMID:11511678), (PMID:12051813), (PMID:12670870), (PMID:1292752), (PMID:15895400), (PMID:15923608), (PMID:16467571), (PMID:18757743), (PMID:1907584), (PMID:19651211), (PMID:21146513), (PMID:9264260), (PMID:9299121)		 UniProt
MGI		 PMID:1292752 PMID:1907584 PMID:2099832 PMID:9264260 PMID:9299121 More... MGI:3610934 MGI:4441265 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Lama2 laminin subunit alpha 2 located_in ISO (PMID:12051813), (PMID:15895400), (PMID:18757743), (PMID:9264260), (PMID:9396756), (PMID:9524190)
(PMID:14557481), (PMID:2099832)		 RGD
MGI
UniProt		 PMID:2099832 PMID:9264260 PMID:9396756 PMID:9524190 PMID:11271373 More... RGD:1600203 NCBI chrNW_004955436:9,829,777...10,400,101
Ensembl chrNW_004955436:9,830,030...10,399,891 		JBrowse link
G Lama3 laminin subunit alpha 3 located_in ISO (PMID:12051813), (PMID:15895400), (PMID:18757743), (PMID:9264260) MGI PMID:9264260 PMID:12051813 PMID:15895400 PMID:18757743 NCBI chrNW_004955402:11,980,980...12,362,143 JBrowse link
G Lama4 laminin subunit alpha 4 located_in ISO (PMID:14557481)
(PMID:15895400), (PMID:18757743), (PMID:9346933), (PMID:9396756), (PMID:9614228)		 UniProt
MGI		 PMID:9346933 PMID:9396756 PMID:9614228 PMID:14557481 PMID:15895400 More... NCBI chrNW_004955526:4,330,388...4,465,810
Ensembl chrNW_004955526:4,330,388...4,465,528 		JBrowse link
G Lama5 laminin subunit alpha 5 located_in
is_active_in		 ISO (PMID:14557481)
(PMID:11507772), (PMID:12051813), (PMID:12743034), (PMID:12921739), (PMID:14568553), (PMID:15895400), (PMID:16886065), (PMID:18757743), (PMID:19651211), (PMID:22665518), (PMID:8707838), (PMID:9299121), (PMID:9396756), (PMID:9735344)
(PMID:10651091)		 UniProt
MGI		 PMID:8707838 PMID:9299121 PMID:9396756 PMID:9735344 PMID:10651091 More... NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Lamb1 laminin subunit beta 1 located_in ISO (PMID:14557481), (PMID:2099832)
(MGI:3610934|PMID:12631063), (MGI:3776221|PMID:16041630), (MGI:4441265|PMID:16631359), (PMID:12743034), (PMID:1292752), (PMID:15102706), (PMID:15895400), (PMID:18757743), (PMID:9264260), (PMID:9396756)		 UniProt
MGI		 PMID:1292752 PMID:2099832 PMID:9264260 PMID:9396756 PMID:12631063 More... MGI:3610934 MGI:3776221 MGI:4441265 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamb2 laminin subunit beta 2 located_in ISO (PMID:10964500), (PMID:14557481), (PMID:2099832)
(MGI:3776221|PMID:16041630), (PMID:7670489)		 UniProt
MGI		 PMID:2099832 PMID:7670489 PMID:10964500 PMID:14557481 PMID:16041630 MGI:3776221 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455 		JBrowse link
G Lamb3 laminin subunit beta 3 located_in ISO (PMID:18757743), (PMID:8012114), (PMID:9264260) MGI PMID:8012114 PMID:9264260 PMID:18757743 NCBI chrNW_004955489:2,547,611...2,603,079
Ensembl chrNW_004955489:2,568,650...2,607,595 		JBrowse link
G Lamc1 laminin subunit gamma 1 located_in ISO (PMID:14557481), (PMID:15159456), (PMID:22952693)
(PMID:12051813), (PMID:12743034), (PMID:1292752), (PMID:15895400), (PMID:18757743), (PMID:7670489), (PMID:9264260), (PMID:9396756)		 BHF-UCL
MGI		 PMID:1292752 PMID:7670489 PMID:9264260 PMID:9396756 PMID:12051813 More... NCBI chrNW_004955406:21,863,836...21,990,161
Ensembl chrNW_004955406:21,863,836...21,992,199 		JBrowse link
G Lamc2 laminin subunit gamma 2 located_in ISO (PMID:11733994), (PMID:15895400), (PMID:18757743), (PMID:9264260) MGI PMID:9264260 PMID:11733994 PMID:15895400 PMID:18757743 NCBI chrNW_004955406:22,020,330...22,074,271
Ensembl chrNW_004955406:22,020,024...22,075,942 		JBrowse link
G Lamc3 laminin subunit gamma 3 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955513:872,301...934,234
Ensembl chrNW_004955513:881,092...934,458 		JBrowse link
G LOC102027549 serotransferrin ISO RGD PMID:1723977 RGD:1625719 NCBI chrNW_004955501:4,801,710...4,832,025
Ensembl chrNW_004955501:4,801,885...4,831,910 		JBrowse link
G Loxl1 lysyl oxidase like 1 ISO RGD PMID:22382377 RGD:7394733 NCBI chrNW_004955450:3,715,109...3,734,641
Ensembl chrNW_004955450:3,715,421...3,735,219 		JBrowse link
G Loxl2 lysyl oxidase like 2 located_in ISO PMID:21835952 UniProt PMID:21835952 RGD:8553848 NCBI chrNW_004955403:46,503,226...46,583,807
Ensembl chrNW_004955403:46,504,440...46,584,016 		JBrowse link
G Matn2 matrilin 2 located_in ISO (PMID:19295126) MGI PMID:19295126 NCBI chrNW_004955417:13,646,379...13,760,050
Ensembl chrNW_004955417:13,646,405...13,759,520 		JBrowse link
G Megf9 multiple EGF like domains 9 located_in ISO (PMID:16981854) MGI PMID:16981854 NCBI chrNW_004955419:7,303,248...7,399,796
Ensembl chrNW_004955419:7,303,346...7,395,493 		JBrowse link
G Mmrn2 multimerin 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955510:5,943,126...5,957,679
Ensembl chrNW_004955510:5,945,043...5,958,352 		JBrowse link
G Nid1 nidogen 1 located_in ISO (PMID:22952693)
(PMID:10639489), (PMID:12051813), (PMID:12588956), (PMID:14566019), (PMID:15895400), (PMID:16330543), (PMID:17596926), (PMID:18757743), (PMID:7670489)
(PMID:12243745)		 BHF-UCL
MGI		 PMID:7670489 PMID:10639489 PMID:12051813 PMID:12243745 PMID:12588956 More... NCBI chrNW_004955492:4,014,912...4,096,659
Ensembl chrNW_004955492:4,014,912...4,096,829 		JBrowse link
G Nid2 nidogen 2 located_in ISO (PMID:22952693)
(PMID:12243745)
(PMID:15895400), (PMID:18757743)		 BHF-UCL
MGI		 PMID:12243745 PMID:15895400 PMID:18757743 PMID:22952693 NCBI chrNW_004955409:10,976,114...11,034,700
Ensembl chrNW_004955409:10,977,110...11,034,015 		JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin ISO MMO:0000686 RGD PMID:21876538 RGD:38599163 NCBI chrNW_004955468:2,715,728...2,734,174
Ensembl chrNW_004955468:2,714,419...2,734,830 		JBrowse link
G Npnt nephronectin located_in ISO (MGI:4947862|PMID:21335239), (PMID:18757743) BHF-UCL PMID:18757743 PMID:21335239 MGI:4947862 NCBI chrNW_004955496:3,321,310...3,388,625
Ensembl chrNW_004955496:3,320,946...3,388,694 		JBrowse link
G Ntn1 netrin 1 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955467:7,795,175...7,991,597
Ensembl chrNW_004955467:7,794,735...7,991,695 		JBrowse link
G Ntn4 netrin 4 located_in ISO (PMID:15186747), (PMID:17588941), (PMID:18757743) MGI PMID:15186747 PMID:17588941 PMID:18757743 NCBI chrNW_004955405:32,080,022...32,182,225
Ensembl chrNW_004955405:32,080,022...32,186,305 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 located_in ISO PMID:10455179 MGI PMID:10455179 RGD:633221 NCBI chrNW_004955537:2,276,080...2,292,303
Ensembl chrNW_004955537:2,275,599...2,292,303 		JBrowse link
G P3h2 prolyl 3-hydroxylase 2 located_in ISO (MGI:3805645|PMID:18487197) UniProt PMID:18487197 MGI:3805645 NCBI chrNW_004955420:17,964,153...18,118,442
Ensembl chrNW_004955420:17,964,153...18,117,095 		JBrowse link
G Papln papilin, proteoglycan like sulfated glycoprotein located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955523:2,077,496...2,104,826
Ensembl chrNW_004955523:2,077,856...2,104,134 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:9990431 RGD:10044215 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Pxdn peroxidasin located_in ISO (MGI:6870970|PMID:22842973) UniProt PMID:22842973 MGI:6870970 NCBI chrNW_004955487:4,867,427...4,936,454
Ensembl chrNW_004955487:4,867,427...4,936,522 		JBrowse link
G Rell2 RELT like 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955415:12,134,642...12,138,071
Ensembl chrNW_004955415:12,134,642...12,138,065 		JBrowse link
G Rpsa ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chrNW_004955420:29,978,160...29,983,544 JBrowse link
G Serpinf1 serpin family F member 1 ISO RGD PMID:15616035 RGD:1359799 NCBI chrNW_004955481:1,414,930...1,426,436
Ensembl chrNW_004955481:1,414,930...1,426,241 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 ISO RGD PMID:9015313 RGD:61563 NCBI chrNW_004955485:815,281...848,561 JBrowse link
G Smoc1 SPARC related modular calcium binding 1 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955466:378,277...528,260
Ensembl chrNW_004955466:378,277...528,260 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955411:4,729,753...4,822,140
Ensembl chrNW_004955411:4,729,706...4,822,140 		JBrowse link
G Spn sialophorin located_in ISO (PMID:7514104) MGI PMID:7514104 NCBI chrNW_004955493:7,256,505...7,258,607 JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:16479080 RGD:2302094 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Tgfbi transforming growth factor beta induced ISO RGD PMID:12911551 RGD:1304421 NCBI chrNW_004955408:31,093,450...31,124,715
Ensembl chrNW_004955408:31,093,050...31,125,398 		JBrowse link
G Thbs2 thrombospondin 2 located_in ISO (PMID:10669089) MGI PMID:10669089 NCBI chrNW_004955411:4,315,055...4,347,044
Ensembl chrNW_004955411:4,314,984...4,347,383 		JBrowse link
G Thbs4 thrombospondin 4 located_in ISO (PMID:17927980) UniProt PMID:17927980 NCBI chrNW_004955425:21,072,873...21,117,061
Ensembl chrNW_004955425:21,069,855...21,117,061 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 located_in ISO (PMID:12950084) RGD
MGI		 PMID:9579471 PMID:12950084 RGD:2290365 NCBI chrNW_004955516:507,113...511,360
Ensembl chrNW_004955516:505,789...512,118 		JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 located_in ISO (PMID:12950084) MGI PMID:12950084 NCBI chrNW_004955506:3,769,113...3,812,896
Ensembl chrNW_004955506:3,768,646...3,813,820 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 located_in ISO (PMID:12950084) MGI PMID:12950084 NCBI chrNW_004955405:41,613,976...41,655,813
Ensembl chrNW_004955405:41,613,966...41,655,813 		JBrowse link
G Tinag tubulointerstitial nephritis antigen located_in ISO (PMID:1762287) UniProt PMID:1762287 NCBI chrNW_004955411:1,718,969...1,809,370
Ensembl chrNW_004955411:1,717,026...1,810,055 		JBrowse link
G Tnc tenascin C located_in ISO (PMID:18950615), (PMID:7687262), (PMID:9013311) MGI PMID:7687262 PMID:9013311 PMID:18950615 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
G Ush2a usherin located_in ISO (PMID:12433396)
(PMID:14676276)		 HGNC-UCL
MGI		 PMID:12433396 PMID:14676276 NCBI chrNW_004955406:1,837,831...2,499,664
Ensembl chrNW_004955406:1,838,885...2,496,980 		JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:11940521 RGD:628330 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Vtn vitronectin ISO RGD PMID:11728964 RGD:10003096 NCBI chrNW_004955481:4,765,078...4,768,027
Ensembl chrNW_004955481:4,765,193...4,771,019 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 located_in ISO (PMID:18314316), (PMID:18757743) MGI PMID:18314316 PMID:18757743 NCBI chrNW_004955486:9,365,920...9,369,117
Ensembl chrNW_004955486:9,366,796...9,369,115 		JBrowse link
G Vwa2 von Willebrand factor A domain containing 2 located_in ISO (PMID:19651211) MGI PMID:19651211 NCBI chrNW_004955431:19,224,373...19,274,475
Ensembl chrNW_004955431:19,232,562...19,272,205 		JBrowse link
G Vwc2 von Willebrand factor C domain containing 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955456:3,949,885...4,075,622
Ensembl chrNW_004955456:3,951,428...4,075,624 		JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of
located_in		 ISO (PMID:19932771)
(PMID:7790374)
(PMID:8018053)
(PMID:26848503), (PMID:28281531)
(PMID:14976317), (PMID:17576241)		 CAFA
MGI
ComplexPortal
UniProt		 PMID:7790374 PMID:8018053 PMID:14976317 PMID:17576241 PMID:19932771 More... NCBI chrNW_004955451:11,468,156...11,484,410
Ensembl chrNW_004955451:11,468,290...11,483,073 		JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of
located_in		 ISO (PMID:17955022)
(PMID:7825727)
(PMID:26848503)
(PMID:18375391), (PMID:19932771)		 UniProt
MGI
ComplexPortal		 PMID:7825727 PMID:17955022 PMID:18375391 PMID:19932771 PMID:26848503 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302 		JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain part_of ISO (PMID:8660302)
(PMID:7276808)
(PMID:9880238)		 BHF-UCL
MGI		 PMID:7276808 PMID:8660302 PMID:9880238 NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473 		JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain part_of
located_in		 ISO (PMID:17576241), (PMID:7487954)
(PMID:7825727)
(PMID:18805790)
(PMID:19932771)		 UniProt
MGI
ComplexPortal
CAFA		 PMID:7487954 PMID:7825727 PMID:17576241 PMID:18805790 PMID:19932771 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887 		JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain part_of ISO (PMID:16107487)
(PMID:12101409)		 BHF-UCL
MGI		 PMID:12101409 PMID:16107487 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain part_of ISO (PMID:12101409) MGI PMID:12101409 NCBI chrNW_004955404:2,092,184...2,178,079
Ensembl chrNW_004955404:2,092,184...2,178,079 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of ISO (PMID:10766752)
(PMID:12101409)		 UniProt
MGI		 PMID:10766752 PMID:12101409 NCBI chrNW_004955453:7,261,278...7,351,414 JBrowse link
G Col4a4 collagen type IV alpha 4 chain part_of ISO (PMID:7523402)
(MGI:69166|PMID:7962065)		 UniProt PMID:7523402 PMID:7962065 MGI:69166 NCBI chrNW_004955453:7,405,167...7,524,038
Ensembl chrNW_004955453:7,420,203...7,520,200 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain part_of ISO (PMID:12101409) MGI PMID:12101409 NCBI chrNW_004955490:7,168,725...7,409,655
Ensembl chrNW_004955490:7,168,676...7,409,887 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain part_of ISO (PMID:10965041), (PMID:12101409) MGI PMID:10965041 PMID:12101409 NCBI chrNW_004955490:7,409,687...7,764,300
Ensembl chrNW_004955490:7,409,160...7,762,929 		JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain part_of ISO (PMID:9683580) UniProt PMID:9683580 NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161 		JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of ISO (PMID:9425231), (PMID:9783710) UniProt PMID:9425231 PMID:9783710 NCBI chrNW_004955403:9,562,401...9,703,828
Ensembl chrNW_004955403:9,562,401...9,703,828 		JBrowse link
G Col5a3 collagen type V alpha 3 chain part_of ISO (PMID:15908193) MGI PMID:15908193 NCBI chrNW_004955495:1,347,171...1,386,683 JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col10a1 collagen type X alpha 1 chain located_in ISO (PMID:11839302) ComplexPortal PMID:11839302 NCBI chrNW_004955526:641,577...679,295 JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain part_of ISO (PMID:3182841) UniProt PMID:3182841 NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235 		JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col12a1 collagen type XII alpha 1 chain ISO RGD PMID:10419532 RGD:727275 NCBI chrNW_004955488:8,128,816...8,240,714
Ensembl chrNW_004955488:8,131,846...8,240,777 		JBrowse link
cone matrix sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbp3 retinol binding protein 3 located_in ISO (PMID:21935947) AgBase PMID:21935947 NCBI chrNW_004955556:2,217,528...2,225,369
Ensembl chrNW_004955556:2,217,440...2,225,501 		JBrowse link
EMILIN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 part_of
located_in		 ISO (PMID:18463100)
(PMID:10821830)		 CAFA
ComplexPortal		 PMID:10821830 PMID:18463100 NCBI chrNW_004955469:9,049,666...9,057,692
Ensembl chrNW_004955469:9,049,662...9,057,684 		JBrowse link
extracellular matrix of synaptic cleft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 is_active_in ISO (PMID:29091766) SynGO PMID:29091766 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Mmp9 matrix metallopeptidase 9 is_active_in ISO PMID:18332222 SynGO PMID:18332222 RGD:405650358 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288 		JBrowse link
G Sparcl1 SPARC like 1 is_active_in ISO PMID:17151913 SynGO PMID:17151913 RGD:13702411 NCBI chrNW_004955474:2,352,662...2,387,237
Ensembl chrNW_004955474:2,370,237...2,391,285 		JBrowse link
G Tnc tenascin C is_active_in ISO PMID:21734302 SynGO PMID:21734302 RGD:155230724 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain part_of ISO (PMID:17331945) MGI PMID:17331945 NCBI chrNW_004955419:13,289,006...13,411,118 JBrowse link
G Lum lumican part_of ISO (PMID:10734230) UniProt PMID:10734230 NCBI chrNW_004955405:28,299,966...28,307,982
Ensembl chrNW_004955405:28,298,988...28,308,054 		JBrowse link
interphotoreceptor matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955502:4,359,071...4,502,623 JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 located_in ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955427:2,825,940...2,919,282
Ensembl chrNW_004955427:2,826,457...2,919,282 		JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:8282025 RGD:6893658 NCBI chrNW_004955556:2,217,528...2,225,369
Ensembl chrNW_004955556:2,217,440...2,225,501 		JBrowse link
G Rtbdn retbindin located_in ISO (MGI:5787765|PMID:25542898) UniProt PMID:25542898 MGI:5787765 NCBI chrNW_004955415:31,895,446...31,899,927
Ensembl chrNW_004955415:31,895,507...31,899,303 		JBrowse link
interstitial matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955427:2,362,403...2,581,970
Ensembl chrNW_004955427:2,363,536...2,581,853 		JBrowse link
G Adamtsl4 ADAMTS like 4 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955413:258,078...269,324
Ensembl chrNW_004955413:257,915...269,325 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955427:12,945,230...12,975,020
Ensembl chrNW_004955427:12,945,230...12,975,114 		JBrowse link
G Col14a1 collagen type XIV alpha 1 chain located_in ISO (PMID:22906538) MGI PMID:22906538 NCBI chrNW_004955417:25,579,547...25,774,067
Ensembl chrNW_004955417:25,579,547...25,774,127 		JBrowse link
G Ecm2 extracellular matrix protein 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955515:5,273,277...5,308,709
Ensembl chrNW_004955515:5,283,725...5,307,749 		JBrowse link
G Egflam EGF like, fibronectin type III and laminin G domains located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955426:22,856,515...23,030,517
Ensembl chrNW_004955426:22,856,186...23,031,029 		JBrowse link
G Igf1 insulin like growth factor 1 ISO RGD PMID:15544842 RGD:1580475 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152 		JBrowse link
G Kazald1 Kazal type serine peptidase inhibitor domain 1 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955485:9,131,081...9,133,418 JBrowse link
G LOC102023759 chromosome unknown open reading frame, human C6orf15 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955583:955,027...956,397
Ensembl chrNW_004955583:955,028...956,411 		JBrowse link
G Mamdc2 MAM domain containing 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955434:2,884,004...3,064,827
Ensembl chrNW_004955434:2,883,785...3,064,827 		JBrowse link
G Nav2 neuron navigator 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955476:614,215...996,450
Ensembl chrNW_004955476:613,512...996,535 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955411:4,729,753...4,822,140
Ensembl chrNW_004955411:4,729,706...4,822,140 		JBrowse link
G Tnc tenascin C located_in ISO (PMID:11767049) MGI PMID:11767049 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
G Vit vitrin located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955441:4,527,281...4,650,384
Ensembl chrNW_004955441:4,546,984...4,649,962 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955486:9,365,920...9,369,117
Ensembl chrNW_004955486:9,366,796...9,369,115 		JBrowse link
G Vwc2 von Willebrand factor C domain containing 2 located_in ISO (PMID:18757743) MGI PMID:18757743 NCBI chrNW_004955456:3,949,885...4,075,622
Ensembl chrNW_004955456:3,951,428...4,075,624 		JBrowse link
laminin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO (PMID:8034675) MGI PMID:8034675 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:8034675) MGI PMID:8034675 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamb2 laminin subunit beta 2 part_of ISO (PMID:8034675) MGI PMID:8034675 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455 		JBrowse link
G Pmp22 peripheral myelin protein 22 part_of ISO (PMID:16436605) MGI PMID:16436605 NCBI chrNW_004955467:2,422,181...2,456,925
Ensembl chrNW_004955467:2,423,659...2,457,307 		JBrowse link
laminin-1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO (PMID:10964500)
(PMID:17517882), (PMID:9264260)
(PMID:8601594)		 UniProt
MGI		 PMID:8601594 PMID:9264260 PMID:10964500 PMID:17517882 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:16289578)
(PMID:9264260)
(PMID:10964500)		 UniProt
MGI		 PMID:9264260 PMID:10964500 PMID:16289578 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamc1 laminin subunit gamma 1 ISO RGD PMID:8648916 RGD:633159 NCBI chrNW_004955406:21,863,836...21,990,161
Ensembl chrNW_004955406:21,863,836...21,992,199 		JBrowse link
laminin-10 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 part_of ISO (PMID:10964500)
(PMID:9299121)		 UniProt
MGI		 PMID:9299121 PMID:10964500 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:10964500), (PMID:16289578)
(PMID:9299121)		 UniProt
MGI		 PMID:9299121 PMID:10964500 PMID:16289578 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamc1 laminin subunit gamma 1 part_of ISO (PMID:9299121) MGI PMID:9299121 NCBI chrNW_004955406:21,863,836...21,990,161
Ensembl chrNW_004955406:21,863,836...21,992,199 		JBrowse link
laminin-2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:16289578) UniProt PMID:16289578 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
G Lamc2 laminin subunit gamma 2 ISO RGD PMID:9417868 RGD:633095 NCBI chrNW_004955406:22,020,330...22,074,271
Ensembl chrNW_004955406:22,020,024...22,075,942 		JBrowse link
laminin-3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin subunit alpha 1 part_of ISO (PMID:10964500) UniProt PMID:10964500 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348 		JBrowse link
G Lama3 laminin subunit alpha 3 ISO RGD PMID:8923212 RGD:633107 NCBI chrNW_004955402:11,980,980...12,362,143 JBrowse link
G Lamb2 laminin subunit beta 2 part_of ISO (PMID:10964500)
(PMID:20566382)		 UniProt
MGI		 PMID:10964500 PMID:20566382 NCBI chrNW_004955532:1,115,412...1,127,264
Ensembl chrNW_004955532:1,115,087...1,127,455 		JBrowse link
laminin-5 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama3 laminin subunit alpha 3 part_of ISO (PMID:9264260) MGI PMID:9264260 NCBI chrNW_004955402:11,980,980...12,362,143 JBrowse link
G Lama5 laminin subunit alpha 5 ISO RGD PMID:9417868 RGD:633095 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116 		JBrowse link
G Lamb3 laminin subunit beta 3 part_of ISO (PMID:9264260) MGI PMID:9264260 NCBI chrNW_004955489:2,547,611...2,603,079
Ensembl chrNW_004955489:2,568,650...2,607,595 		JBrowse link
G Lamc2 laminin subunit gamma 2 part_of ISO (PMID:9264260) MGI PMID:9264260 NCBI chrNW_004955406:22,020,330...22,074,271
Ensembl chrNW_004955406:22,020,024...22,075,942 		JBrowse link
laminin-8 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 part_of ISO (PMID:16289578) UniProt PMID:16289578 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433 		JBrowse link
matrilin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn2 matrilin 2 part_of ISO (MGI:1336568|PMID:10224097) ComplexPortal PMID:10224097 MGI:1336568 NCBI chrNW_004955417:13,646,379...13,760,050
Ensembl chrNW_004955417:13,646,405...13,759,520 		JBrowse link
G Matn3 matrilin 3 part_of ISO (MGI:1353153|PMID:10660556) ComplexPortal PMID:10660556 MGI:1353153 NCBI chrNW_004955469:2,548,443...2,568,497
Ensembl chrNW_004955469:2,548,443...2,568,497 		JBrowse link
G Matn4 matrilin 4 part_of ISO (MGI:1934728|PMID:11279097) ComplexPortal PMID:11279097 MGI:1934728 NCBI chrNW_004955445:12,027,626...12,040,589
Ensembl chrNW_004955445:12,029,882...12,040,335 		JBrowse link
multimerin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmrn1 multimerin 1 located_in ISO (PMID:9454761) ComplexPortal PMID:9454761 NCBI chrNW_004955405:1,043,661...1,092,862
Ensembl chrNW_004955405:1,043,656...1,095,321 		JBrowse link
perineuronal net term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan ISO RGD PMID:18364019 RGD:2315810 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Bcan brevican located_in ISO MMO:0000669
(MGI:2677604|PMID:14550776), (MGI:6192419|PMID:22121037)		 RGD
UniProt		 PMID:14550776 PMID:16644727 PMID:22121037 MGI:2677604 MGI:6192419 RGD:9589827 NCBI chrNW_004955545:2,723,780...2,739,334
Ensembl chrNW_004955545:2,723,780...2,739,450 		JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 located_in ISO (MGI:2677604|PMID:14550776), (MGI:6192419|PMID:22121037) UniProt PMID:14550776 PMID:22121037 MGI:2677604 MGI:6192419 NCBI chrNW_004955524:2,594,097...2,598,855
Ensembl chrNW_004955524:2,595,426...2,598,861 		JBrowse link
G Ncan neurocan ISO MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chrNW_004955524:2,602,767...2,628,771
Ensembl chrNW_004955524:2,602,715...2,628,805 		JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 located_in ISO (PMID:10793198) RGD
MGI		 PMID:10793198 PMID:16644727 RGD:9589827 NCBI chrNW_004955479:3,611,658...3,734,225
Ensembl chrNW_004955479:3,624,993...3,733,183 		JBrowse link
G Tnr tenascin R located_in ISO (MGI:6830496|PMID:8244531), (PMID:10341229) ComplexPortal PMID:8244531 PMID:10341229 MGI:6830496 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937 		JBrowse link
G Vcan versican ISO MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chrNW_004955418:26,967,595...27,078,430 JBrowse link
perisynaptic extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan is_active_in ISO (PMID:27615741) SynGO PMID:27615741 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Bcan brevican is_active_in ISO PMID:10414531
PMID:16503162		 SynGO PMID:10414531 PMID:16503162 RGD:13702202 RGD:13702210 NCBI chrNW_004955545:2,723,780...2,739,334
Ensembl chrNW_004955545:2,723,780...2,739,450 		JBrowse link
G Ncan neurocan is_active_in ISO (PMID:29670169), (PMID:30356641) SynGO PMID:29670169 PMID:30356641 NCBI chrNW_004955524:2,602,767...2,628,771
Ensembl chrNW_004955524:2,602,715...2,628,805 		JBrowse link
G Slit2 slit guidance ligand 2 is_active_in ISO PMID:34686348 SynGO PMID:34686348 RGD:405650259 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908 		JBrowse link
G Tnc tenascin C is_active_in ISO (PMID:16452087) SynGO PMID:16452087 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
G Tnr tenascin R is_active_in ISO PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937 		JBrowse link
tenascin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnc tenascin C part_of ISO (MGI:3028459|PMID:14709716) ComplexPortal PMID:14709716 MGI:3028459 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958 		JBrowse link
G Tnn tenascin N located_in
part_of		 ISO (PMID:17909022)
(MGI:3028459|PMID:14709716)		 ComplexPortal PMID:14709716 PMID:17909022 MGI:3028459 NCBI chrNW_004955406:14,882,414...14,950,572
Ensembl chrNW_004955406:14,882,245...14,950,587 		JBrowse link
G Tnr tenascin R part_of ISO (MGI:6828676|PMID:2477380) ComplexPortal PMID:2477380 MGI:6828676 NCBI chrNW_004955406:15,007,248...15,512,219
Ensembl chrNW_004955406:15,088,843...15,282,937 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12560
    cellular anatomical entity 12404
      external encapsulating structure 264
        extracellular matrix 263
          collagen-containing extracellular matrix 186
            EMILIN complex 1
            anchoring collagen complex + 1
            basement membrane + 98
            collagen and cuticulin-based cuticle extracellular matrix + 0
            collagen type XXVI trimer 0
            collagen type XXVIII trimer 0
            complex of collagen trimers + 17
            extracellular matrix of synaptic cleft 4
            hyaline layer + 0
            interphotoreceptor matrix + 4
            interstitial matrix 16
            matrilin complex 3
            multimerin complex 1
            perisynaptic extracellular matrix + 9
            synapse-associated extracellular matrix + 12
            tenascin complex 3
            transforming growth factor beta complex 0
Path 2
Term Annotations click to browse term
  cellular_component 12560
    cellular anatomical entity 12404
      cell periphery 3690
        external encapsulating structure 264
          extracellular matrix 263
            collagen-containing extracellular matrix 186
              EMILIN complex 1
              anchoring collagen complex + 1
              basement membrane + 98
              collagen and cuticulin-based cuticle extracellular matrix + 0
              collagen type XXVI trimer 0
              collagen type XXVIII trimer 0
              complex of collagen trimers + 17
              extracellular matrix of synaptic cleft 4
              hyaline layer + 0
              interphotoreceptor matrix + 4
              interstitial matrix 16
              matrilin complex 3
              multimerin complex 1
              perisynaptic extracellular matrix + 9
              synapse-associated extracellular matrix + 12
              tenascin complex 3
              transforming growth factor beta complex 0
paths to the root