Nid2 (nidogen 2) - Rat Genome Database

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Gene: Nid2 (nidogen 2) Chinchilla lanigera
Analyze
Symbol: Nid2
Name: nidogen 2
RGD ID: 9040777
Description: INVOLVED IN cell-matrix adhesion (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nidogen 2 (osteonidogen); nidogen-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,977,110 - 11,034,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,976,114 - 11,034,700 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Nid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,977,110 - 11,034,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,976,114 - 11,034,700 (+)NCBIChiLan1.0ChiLan1.0
NID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381452,004,809 - 52,069,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1452,004,809 - 52,069,059 (-)EnsemblGRCh38hg38GRCh38
GRCh371452,471,527 - 52,535,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361451,541,270 - 51,605,696 (-)NCBINCBI36Build 36hg18NCBI36
Build 341451,541,270 - 51,605,696NCBI
Celera1432,338,519 - 32,403,077 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1432,632,190 - 32,696,681 (-)NCBIHuRef
CHM1_11452,409,979 - 52,475,129 (-)NCBICHM1_1
T2T-CHM13v2.01446,211,853 - 46,276,147 (-)NCBIT2T-CHM13v2.0
Nid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391419,801,325 - 19,861,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1419,801,333 - 19,861,855 (+)EnsemblGRCm39 Ensembl
GRCm381419,751,257 - 19,811,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1419,751,265 - 19,811,787 (+)EnsemblGRCm38mm10GRCm38
MGSCv371420,570,479 - 20,631,009 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361418,541,953 - 18,602,483 (+)NCBIMGSCv36mm8
Celera1416,134,631 - 16,194,784 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1410.73NCBI
Nid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8154,507,224 - 4,562,949 (-)NCBIGRCr8
mRatBN7.2154,458,082 - 4,513,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl154,458,084 - 4,513,843 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx154,468,479 - 4,524,204 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,854,925 - 5,910,650 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0154,467,311 - 4,523,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,893,999 - 4,951,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,894,213 - 4,951,917 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,984,788 - 9,041,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,801,183 - 4,856,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1154,801,182 - 4,806,069 (-)NCBI
Celera1594,572 - 150,317 (+)NCBICelera
Cytogenetic Map15p16NCBI
NID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21553,138,657 - 53,204,151 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11452,355,168 - 52,419,289 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01432,604,392 - 32,668,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11450,889,602 - 50,953,830 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1450,890,317 - 50,953,830 (-)Ensemblpanpan1.1panPan2
NID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,240,427 - 28,300,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl828,102,780 - 28,300,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha827,992,186 - 28,052,999 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0828,417,496 - 28,478,303 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl828,417,539 - 28,479,186 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1828,086,734 - 28,147,532 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0828,147,524 - 28,208,416 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0828,494,257 - 28,555,292 (-)NCBIUU_Cfam_GSD_1.0
Nid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864060,456,233 - 60,515,524 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649513,676,463 - 13,734,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649513,676,224 - 13,735,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1181,699,106 - 181,815,167 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11181,699,098 - 181,773,084 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21201,970,938 - 202,045,321 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,106,450 - 29,186,096 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2429,107,115 - 29,186,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605317,397,183 - 17,460,628 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,970,556 - 17,031,833 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473116,970,974 - 17,032,515 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014655   ⟹   ENSCLAP00000014497
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540910,977,110 - 11,034,015 (+)Ensembl
RefSeq Acc Id: XM_005377155   ⟹   XP_005377212
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540910,976,114 - 11,034,700 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377212 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014497
  ENSCLAP00000014497.1
Reference Protein Sequences
RefSeq Acc Id: XP_005377212   ⟸   XM_005377155
- UniProtKB: A0A8C2YPV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014497   ⟸   ENSCLAT00000014655
Protein Domains
EGF-like   NIDO   Nidogen G2 beta-barrel   Thyroglobulin type-1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014655 ENTREZGENE
  ENSCLAT00000014655.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  2.40.155.10 UniProtKB/TrEMBL
  4.10.800.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  EGF_dom UniProtKB/TrEMBL
  G2_nidogen/fibulin_G2F UniProtKB/TrEMBL
  GFP UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  NIDO_dom UniProtKB/TrEMBL
  Thyroglobulin_1 UniProtKB/TrEMBL
  Thyroglobulin_1_sf UniProtKB/TrEMBL
NCBI Gene Nid2 ENTREZGENE
PANTHER NIDOGEN 2 UniProtKB/TrEMBL
  VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED UniProtKB/TrEMBL
Pfam EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  G2F UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
  Thyroglobulin_1 UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
  NIDO UniProtKB/TrEMBL
  NIDOGEN_G2 UniProtKB/TrEMBL
  THYROGLOBULIN_1_1 UniProtKB/TrEMBL
  THYROGLOBULIN_1_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  G2F UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
  SM00211 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF54511 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57610 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A8C2YPV2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Nid2  nidogen 2    nidogen 2 (osteonidogen)  Symbol and/or name change 5135510 APPROVED