Snorc (secondary ossification center associated regulator of chondrocyte maturation) - Rat Genome Database

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Gene: Snorc (secondary ossification center associated regulator of chondrocyte maturation) Chinchilla lanigera
Analyze
Symbol: Snorc
Name: secondary ossification center associated regulator of chondrocyte maturation
RGD ID: 8824737
Description: INVOLVED IN cartilage development (ortholog); ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cell periphery (ortholog); collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C2orf82; LOC102012921; uncharacterized protein C2orf82 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,187,672 - 3,191,662 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554533,187,624 - 3,192,605 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snorc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,187,672 - 3,191,662 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554533,187,624 - 3,192,605 (-)NCBIChiLan1.0ChiLan1.0
SNORC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,866,451 - 232,878,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,857,270 - 232,878,708 (+)EnsemblGRCh38hg38GRCh38
GRCh372233,731,161 - 233,743,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,443,238 - 233,449,351 (+)NCBINCBI36Build 36hg18NCBI36
Celera2227,499,270 - 227,505,383 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,583,855 - 225,589,964 (+)NCBIHuRef
CHM1_12233,740,922 - 233,747,035 (+)NCBICHM1_1
T2T-CHM13v2.02233,353,135 - 233,365,383 (+)NCBIT2T-CHM13v2.0
Snorc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,397,734 - 87,403,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,397,993 - 87,403,204 (+)EnsemblGRCm39 Ensembl
GRCm38187,470,201 - 87,475,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,470,271 - 87,475,482 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,366,839 - 89,372,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36189,301,372 - 89,306,653 (+)NCBIMGSCv36mm8
Celera190,435,932 - 90,441,129 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.41NCBI
Snorc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,574,943 - 95,593,394 (+)NCBIGRCr8
mRatBN7.2988,140,510 - 88,145,527 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,140,419 - 88,145,891 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx996,564,757 - 96,570,235 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,700,837 - 101,706,315 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,068,665 - 100,074,137 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,562,839 - 94,568,312 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,562,839 - 94,568,312 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0994,277,428 - 94,289,755 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,287,756 - 86,293,229 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1986,471,177 - 86,476,283 (+)NCBI
Celera985,550,052 - 85,555,522 (+)NCBICelera
Cytogenetic Map9q35NCBI
SNORC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,474,611 - 135,484,280 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,489,583 - 135,499,243 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B120,100,778 - 120,110,444 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B239,017,916 - 239,027,304 (+)NCBIpanpan1.1PanPan1.1panPan2
SNORC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,453,804 - 44,472,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,466,852 - 44,470,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2544,946,062 - 44,968,021 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02544,724,351 - 44,731,525 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,723,832 - 44,731,461 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,634,688 - 44,656,607 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,480,719 - 44,502,706 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,635,988 - 44,657,916 (+)NCBIUU_Cfam_GSD_1.0
Snorc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,649,054 - 186,655,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,284,203 - 4,290,428 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,284,176 - 4,290,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNORC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,323,562 - 133,330,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115133,323,562 - 133,330,253 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,324,526 - 147,331,222 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNORC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110118,901,596 - 118,908,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10118,902,349 - 118,908,530 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604080,599,859 - 80,600,910 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snorc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,552,042 - 5,556,262 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248435,551,945 - 5,556,269 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015636   ⟹   ENSCLAP00000015474
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554533,187,672 - 3,191,662 (-)Ensembl
RefSeq Acc Id: XM_013519900   ⟹   XP_013375354
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554533,187,624 - 3,192,605 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375354 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015474.1
Reference Protein Sequences
RefSeq Acc Id: XP_013375354   ⟸   XM_013519900
- Sequence:
RefSeq Acc Id: ENSCLAP00000015474   ⟸   ENSCLAT00000015636


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010644 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015636.1 UniProtKB/TrEMBL
InterPro SNORC UniProtKB/TrEMBL
NCBI Gene LOC102012921 ENTREZGENE
PANTHER PROTEIN SNORC UniProtKB/TrEMBL
  PTHR28453 UniProtKB/TrEMBL
Pfam DUF4690 UniProtKB/TrEMBL
UniProt A0A8C2VKW9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-07 Snorc  secondary ossification center associated regulator of chondrocyte maturation  LOC102012921  chromosome unknown open reading frame, human C2orf82  Symbol and/or name change 5135510 APPROVED