Tgm4 (transglutaminase 4) - Rat Genome Database

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Gene: Tgm4 (transglutaminase 4) Chinchilla lanigera
Analyze
Symbol: Tgm4
Name: transglutaminase 4
RGD ID: 8875480
Description: INVOLVED IN mating plug formation (ortholog); ASSOCIATED WITH essential tremor (ortholog); genetic disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein-glutamine gamma-glutamyltransferase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,737,533 - 26,766,386 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,736,880 - 26,766,386 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tgm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,737,533 - 26,766,386 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,736,880 - 26,766,386 (-)NCBIChiLan1.0ChiLan1.0
TGM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38344,874,608 - 44,914,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl344,874,608 - 44,914,990 (+)EnsemblGRCh38hg38GRCh38
GRCh37344,916,100 - 44,956,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,891,102 - 44,931,092 (+)NCBINCBI36Build 36hg18NCBI36
Build 34344,891,130 - 44,931,097NCBI
Celera344,854,064 - 44,894,051 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef344,959,958 - 44,999,946 (+)NCBIHuRef
CHM1_1344,866,110 - 44,906,068 (+)NCBICHM1_1
T2T-CHM13v2.0344,890,333 - 44,930,718 (+)NCBIT2T-CHM13v2.0
Tgm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,863,806 - 122,896,623 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,863,791 - 122,896,626 (+)EnsemblGRCm39 Ensembl
GRCm389123,034,741 - 123,067,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,034,726 - 123,067,561 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,943,859 - 122,976,676 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,883,439 - 122,916,256 (+)NCBIMGSCv36mm8
Celera9123,496,347 - 123,518,874 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.56NCBI
Tgm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,566,887 - 131,603,920 (+)NCBIGRCr8
mRatBN7.28122,689,429 - 122,726,463 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,689,429 - 122,726,463 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,278,855 - 128,316,606 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,477,795 - 126,515,546 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,305,997 - 124,343,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,117,279 - 132,157,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,120,452 - 132,157,485 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,272,260 - 131,311,091 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,782,460 - 127,819,491 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,802,187 - 127,838,603 (+)NCBI
Celera8121,803,208 - 121,839,825 (+)NCBICelera
Cytogenetic Map8q32NCBI
TGM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2244,833,048 - 44,873,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1344,837,814 - 44,878,045 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0344,775,855 - 44,815,691 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1345,830,764 - 45,870,208 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,830,764 - 45,870,208 (+)Ensemblpanpan1.1panPan2
TGM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,362,600 - 6,391,099 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,362,782 - 6,390,223 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041160,778,265 - 160,798,323 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473075,597,903 - 75,619,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021893   ⟹   ENSCLAP00000021690
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542026,737,533 - 26,766,386 (-)Ensembl
RefSeq Acc Id: XM_005383619   ⟹   XP_005383676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542026,736,880 - 26,766,386 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021690
  ENSCLAP00000021690.1
Reference Protein Sequences
RefSeq Acc Id: XP_005383676   ⟸   XM_005383619
- UniProtKB: A0A8C2YTA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021690   ⟸   ENSCLAT00000021893
Protein Domains
Transglutaminase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021893 ENTREZGENE
  ENSCLAT00000021893.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.260.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/TrEMBL
  Transglutaminase-like_sf UniProtKB/TrEMBL
  Transglutaminase_animal UniProtKB/TrEMBL
  Transglutaminase_AS UniProtKB/TrEMBL
  Transglutaminase_C UniProtKB/TrEMBL
  Transglutaminase_C_sf UniProtKB/TrEMBL
  Transglutaminase_N UniProtKB/TrEMBL
NCBI Gene Tgm4 ENTREZGENE
PANTHER PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE UniProtKB/TrEMBL
  PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE 4 UniProtKB/TrEMBL
Pfam Transglut_C UniProtKB/TrEMBL
  Transglut_core UniProtKB/TrEMBL
  Transglut_N UniProtKB/TrEMBL
PIRSF TGM_EBP42 UniProtKB/TrEMBL
PROSITE TRANSGLUTAMINASES UniProtKB/TrEMBL
SMART TGc UniProtKB/TrEMBL
Superfamily-SCOP SSF49309 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A8C2YTA1 ENTREZGENE, UniProtKB/TrEMBL