Chadl (chondroadherin like) - Rat Genome Database

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Gene: Chadl (chondroadherin like) Chinchilla lanigera
Analyze
Symbol: Chadl
Name: chondroadherin like
RGD ID: 8781372
Description: ENCODES a protein that exhibits collagen binding (ortholog); collagen fibril binding (ortholog); INVOLVED IN negative regulation of chondrocyte differentiation (ortholog); negative regulation of collagen fibril organization (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); nephronophthisis-like nephropathy 1 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chondroadherin-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,851,420 - 26,862,081 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,846,714 - 26,862,082 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chadl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,851,420 - 26,862,081 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,846,714 - 26,862,082 (-)NCBIChiLan1.0ChiLan1.0
CHADL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,229,513 - 41,240,931 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,229,510 - 41,240,931 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,625,517 - 41,636,935 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,625,514 - 41,636,935 (-)NCBINCBI36Build 36hg18NCBI36
Celera2225,431,894 - 25,443,315 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,589,978 - 24,601,405 (-)NCBIHuRef
CHM1_12241,585,206 - 41,596,627 (-)NCBICHM1_1
T2T-CHM13v2.02241,702,131 - 41,715,871 (-)NCBIT2T-CHM13v2.0
Chadl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,570,366 - 81,581,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,562,497 - 81,581,488 (-)EnsemblGRCm39 Ensembl
GRCm381581,686,166 - 81,697,373 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,678,296 - 81,697,287 (-)EnsemblGRCm38mm10GRCm38
MGSCv371581,516,596 - 81,527,717 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,519,375 - 81,524,491 (-)NCBIMGSCv36mm8
Celera1583,805,272 - 83,816,393 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.2NCBI
Chadl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,085,447 - 115,097,565 (-)NCBIGRCr8
mRatBN7.27113,205,323 - 113,218,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,210,748 - 113,217,272 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07122,915,847 - 122,929,127 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,922,022 - 122,926,336 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,890,343 - 122,903,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7109,524,311 - 109,537,591 (-)NCBICelera
Cytogenetic Map7q34NCBI
CHADL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,041,313 - 51,073,980 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,742,551 - 53,773,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,106,953 - 22,138,122 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,197,763 - 40,205,636 (-)NCBIpanpan1.1PanPan1.1panPan2
CHADL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,992,848 - 24,006,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,953,912 - 24,003,162 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,925,004 - 23,942,058 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,737,290 - 24,754,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,698,297 - 24,747,502 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,453,725 - 24,470,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,774,588 - 24,791,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,949,120 - 24,966,177 (+)NCBIUU_Cfam_GSD_1.0
Chadl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,623,231 - 7,633,134 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492633,477 - 646,002 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492633,443 - 643,550 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHADL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,248,444 - 7,253,170 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,246,892 - 7,258,962 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,528,187 - 4,540,245 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHADL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,772,516 - 23,785,210 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,778,433 - 23,783,250 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,638,789 - 101,651,599 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chadl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,283,639 - 7,289,531 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,284,344 - 7,293,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024735   ⟹   ENSCLAP00000024500
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541326,851,420 - 26,862,081 (-)Ensembl
RefSeq Acc Id: XM_013511352   ⟹   XP_013366806
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541326,846,714 - 26,862,082 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013366806 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024500
  ENSCLAP00000024500.1
RefSeq Acc Id: XP_013366806   ⟸   XM_013511352
- Sequence:
Ensembl Acc Id: ENSCLAP00000024500   ⟸   ENSCLAT00000024735
Protein Domains
LRRCT   LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016821 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024735 ENTREZGENE
  ENSCLAT00000024735.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRR_TM_domain-containing UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Chadl ENTREZGENE
PANTHER ANTIGEN BSP, PUTATIVE-RELATED UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15-LIKE UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2YUL5_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Chadl  chondroadherin like    chondroadherin-like  Symbol and/or name change 5135510 APPROVED