Ccdc80 (coiled-coil domain containing 80) - Rat Genome Database

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Gene: Ccdc80 (coiled-coil domain containing 80) Chinchilla lanigera
Analyze
Symbol: Ccdc80
Name: coiled-coil domain containing 80
RGD ID: 8720735
Description: ENCODES a protein that exhibits fibronectin binding (ortholog); glycosaminoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); response to bacterium (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); interstitial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 80
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,945,230 - 12,975,114 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542712,945,230 - 12,975,020 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Ccdc80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,945,230 - 12,975,114 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542712,945,230 - 12,975,020 (-)NCBIChiLan1.0ChiLan1.0
CCDC80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383112,596,797 - 112,641,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3112,596,797 - 112,649,530 (-)EnsemblGRCh38hg38GRCh38
GRCh373112,315,644 - 112,359,990 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,806,097 - 113,842,667 (-)NCBINCBI36Build 36hg18NCBI36
Build 343113,806,100 - 113,842,667NCBI
Celera3110,732,063 - 110,768,628 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3109,706,775 - 109,743,319 (-)NCBIHuRef
CHM1_13112,287,318 - 112,323,877 (-)NCBICHM1_1
T2T-CHM13v2.03115,317,839 - 115,362,183 (-)NCBIT2T-CHM13v2.0
Ccdc80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,913,770 - 44,948,287 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,913,765 - 44,948,440 (+)EnsemblGRCm39 Ensembl
GRCm381645,093,407 - 45,127,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,093,402 - 45,128,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv371645,094,166 - 45,128,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361645,013,496 - 45,046,996 (+)NCBIMGSCv36mm8
Celera1645,485,370 - 45,521,051 (+)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1629.39NCBI
Ccdc80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,191,188 - 69,224,844 (-)NCBIGRCr8
mRatBN7.21155,685,165 - 55,718,827 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,685,872 - 55,719,137 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,498,843 - 64,532,488 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,160,702 - 57,194,361 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,230,920 - 56,264,579 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,645,660 - 60,679,249 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,645,086 - 60,679,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01164,747,815 - 64,781,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,222,551 - 57,257,162 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,280,642 - 57,314,846 (-)NCBI
Celera1155,250,971 - 55,284,620 (-)NCBICelera
Cytogenetic Map11q21NCBI
CCDC80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22110,607,542 - 110,645,344 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13110,603,851 - 110,648,646 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03109,753,743 - 109,789,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13116,678,009 - 116,714,001 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3116,678,161 - 116,712,611 (-)Ensemblpanpan1.1panPan2
CCDC80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,105,086 - 17,141,380 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,105,086 - 17,139,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,208,232 - 17,244,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03317,348,918 - 17,385,073 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,348,924 - 17,383,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,153,695 - 17,189,794 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,201,117 - 17,237,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03317,750,713 - 17,786,844 (-)NCBIUU_Cfam_GSD_1.0
Ccdc80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,191,030 - 137,227,449 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936536293,549 - 330,998 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936536294,650 - 330,875 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,207,598 - 147,245,994 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113147,203,333 - 147,244,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213156,787,502 - 156,825,938 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103228317
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,168,159 - 68,182,818 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605087,161,904 - 87,198,049 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,891,184 - 35,929,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473135,891,180 - 35,928,497 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011515   ⟹   ENSCLAP00000011378
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542712,945,230 - 12,975,114 (-)Ensembl
RefSeq Acc Id: XM_005386391   ⟹   XP_005386448
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542712,945,230 - 12,975,020 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386448 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011378
  ENSCLAP00000011378.1
Reference Protein Sequences
RefSeq Acc Id: XP_005386448   ⟸   XM_005386391
- UniProtKB: A0A8C2V7Z2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011378   ⟸   ENSCLAT00000011515
Protein Domains
DUF4174


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007848 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011515 ENTREZGENE
  ENSCLAT00000011515.1 UniProtKB/TrEMBL
InterPro DUF4174 UniProtKB/TrEMBL
NCBI Gene Ccdc80 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 80 UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 80 UniProtKB/TrEMBL
Pfam DUF4174 UniProtKB/TrEMBL
UniProt A0A8C2V7Z2 ENTREZGENE, UniProtKB/TrEMBL