Lama3 (laminin subunit alpha 3) - Rat Genome Database

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Gene: Lama3 (laminin subunit alpha 3) Chinchilla lanigera
Analyze
Symbol: Lama3
Name: laminin subunit alpha 3
RGD ID: 8821532
Description: INVOLVED IN cell-cell adhesion (ortholog); endodermal cell differentiation (ortholog); hemidesmosome assembly (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); genetic disease (ortholog); idiopathic pulmonary fibrosis (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: laminin subunit alpha-3; laminin, alpha 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540211,980,980 - 12,362,143 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lama3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540211,980,980 - 12,362,143 (+)NCBIChiLan1.0ChiLan1.0
LAMA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,689,453 - 23,955,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,689,453 - 23,956,222 (+)EnsemblGRCh38hg38GRCh38
GRCh371821,269,417 - 21,535,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,523,560 - 19,789,028 (+)NCBINCBI36Build 36hg18NCBI36
Build 341819,707,003 - 19,789,025NCBI
Celera1818,085,885 - 18,351,313 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1818,125,049 - 18,390,663 (+)NCBIHuRef
CHM1_11821,196,874 - 21,462,312 (+)NCBICHM1_1
T2T-CHM13v2.01823,883,722 - 24,149,324 (+)NCBIT2T-CHM13v2.0
Lama3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,466,806 - 12,716,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,466,876 - 12,716,070 (+)EnsemblGRCm39 Ensembl
GRCm381812,333,417 - 12,583,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,333,819 - 12,583,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371812,492,533 - 12,741,522 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361812,477,560 - 12,726,182 (+)NCBIMGSCv36mm8
Celera1812,567,449 - 12,814,993 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.2NCBI
Lama3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,797,898 - 4,033,021 (+)NCBIGRCr8
mRatBN7.2183,523,168 - 3,751,722 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,523,133 - 3,751,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,744,392 - 3,974,325 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,531,960 - 4,761,892 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,781,462 - 4,020,783 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,704,866 - 3,941,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,705,916 - 3,940,838 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,712,673 - 3,939,550 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,030,463 - 4,121,355 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,030,462 - 4,121,355 (+)NCBI
Celera183,569,544 - 3,806,888 (+)NCBICelera
Cytogenetic Map18p13NCBI
LAMA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21741,120,722 - 41,389,529 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,998,373 - 27,082,969 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,941,316 - 17,208,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,750,271 - 20,832,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,565,649 - 20,831,957 (+)Ensemblpanpan1.1panPan2
LAMA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,405,719 - 64,654,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,406,082 - 64,655,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha763,854,180 - 64,103,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0764,463,775 - 64,714,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,463,779 - 64,714,403 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,132,606 - 64,382,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,147,994 - 64,397,958 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,453,184 - 64,703,083 (-)NCBIUU_Cfam_GSD_1.0
LOC101971816
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,122,089 - 3,355,319 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,548,715 - 108,805,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,548,818 - 108,805,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,146,225 - 101,337,451 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11856,580,245 - 56,851,381 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1856,580,700 - 56,850,451 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605031,327,064 - 31,599,113 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lama3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247708,237,085 - 8,482,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013504299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01000335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01229317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01229318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013504299   ⟹   XP_013359753
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540211,980,980 - 12,362,143 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359753 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015055
  ENSCLAP00000015055.1
RefSeq Acc Id: XP_013359753   ⟸   XM_013504299
- Sequence:
Protein Domains
EGF-like   Laminin EGF-like   Laminin G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010376 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015215 ENTREZGENE
  ENSCLAT00000015215.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  LE_dom UniProtKB/TrEMBL
NCBI Gene LOC102020507 ENTREZGENE
PANTHER LAMININ SUBUNIT ALPHA-3 UniProtKB/TrEMBL
  PIKACHURIN-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART EGF_Lam UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2VMN0_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Lama3  laminin subunit alpha 3    laminin, alpha 3  Symbol and/or name change 5135510 APPROVED
2015-08-25 Lama3  laminin, alpha 3  LOC102020507  laminin subunit alpha-3-like  Symbol and/or name change 5135510 APPROVED