Ccn3 (cellular communication network factor 3) - Rat Genome Database

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Gene: Ccn3 (cellular communication network factor 3) Chinchilla lanigera
Analyze
Symbol: Ccn3
Name: cellular communication network factor 3
RGD ID: 8821781
Description: ENCODES a protein that exhibits integrin binding (ortholog); Notch binding (ortholog); INVOLVED IN angiogenesis (ortholog); bone regeneration (ortholog); cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hereditary multiple exostoses (ortholog); FOUND IN axon (ortholog); collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nephroblastoma overexpressed; Nov
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541725,218,613 - 25,225,755 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541725,218,613 - 25,225,755 (+)NCBIChiLan1.0ChiLan1.0
CCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388119,416,446 - 119,424,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8119,416,446 - 119,424,434 (+)EnsemblGRCh38hg38GRCh38
GRCh378120,428,686 - 120,436,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,497,882 - 120,505,776 (+)NCBINCBI36Build 36hg18NCBI36
Build 348120,497,881 - 120,505,776NCBI
Celera8116,617,968 - 116,626,094 (+)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8115,749,069 - 115,757,195 (+)NCBIHuRef
CHM1_18120,469,559 - 120,477,685 (+)NCBICHM1_1
T2T-CHM13v2.08120,544,918 - 120,552,906 (+)NCBIT2T-CHM13v2.0
Ccn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,609,306 - 54,617,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,609,098 - 54,617,435 (+)EnsemblGRCm39 Ensembl
GRCm381554,745,910 - 54,753,762 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1554,745,702 - 54,754,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv371554,577,483 - 54,585,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361554,576,011 - 54,583,845 (+)NCBIMGSCv36mm8
Celera1556,280,961 - 56,288,712 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.49NCBI
Ccn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8787,983,788 - 87,990,810 (+)NCBIGRCr8
mRatBN7.2786,094,000 - 86,101,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,094,000 - 86,101,019 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx787,980,947 - 87,987,976 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0790,182,154 - 90,189,181 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0789,987,634 - 89,994,661 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0794,375,134 - 94,382,154 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,375,020 - 94,383,024 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,015,159 - 95,022,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,162,676 - 91,169,696 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,196,905 - 91,203,925 (+)NCBI
Celera782,897,053 - 82,904,052 (+)NCBICelera
Cytogenetic Map7q32NCBI
CCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27136,840,741 - 136,849,075 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18112,353,155 - 112,361,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,105,935 - 116,114,241 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18118,856,969 - 118,865,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8118,855,445 - 118,865,039 (+)Ensemblpanpan1.1panPan2
CCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,507,586 - 18,515,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,507,580 - 18,514,619 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,513,047 - 18,521,248 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01318,834,948 - 18,843,041 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1318,834,910 - 18,843,404 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11318,562,694 - 18,570,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01318,661,289 - 18,669,494 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01318,892,544 - 18,900,635 (+)NCBIUU_Cfam_GSD_1.0
Ccn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,752,276 - 19,759,704 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647027,178,621 - 27,185,564 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647027,178,439 - 27,185,554 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,505,701 - 19,514,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,505,698 - 19,514,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,525,288 - 20,534,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18113,989,862 - 113,998,187 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8113,990,152 - 113,998,261 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603926,294,069 - 26,302,119 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,573,718 - 17,580,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,573,693 - 17,580,884 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005381909   ⟹   XP_005381966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541725,218,613 - 25,225,755 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381966 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005381966   ⟸   XM_005381909
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Nov ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-16 Ccn3  cellular communication network factor 3  Nov  nephroblastoma overexpressed  Symbol and/or name change 5135510 APPROVED