Rell2 (RELT like 2) - Rat Genome Database

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Gene: Rell2 (RELT like 2) Chinchilla lanigera
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Symbol: Rell2
Name: RELT like 2
RGD ID: 8855899
Description: ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); positive regulation of p38MAPK cascade (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RELT-like 2; RELT-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,134,642 - 12,138,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,134,642 - 12,138,071 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rell2Chinchillafamilial adenomatous polyposis 1  ISORELL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
Rell2ChinchillaHereditary Neoplastic Syndromes  ISORELL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary Cancer SyndromeClinVarPMID:17963004 more ...
Rell2ChinchillaNeurodevelopmental Disorders  ISORELL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rell2Chinchillapositive regulation of cell-substrate adhesion acts_upstream_of_or_withinISORell2 (Mus musculus)9068941 PMID:18757743MGIPMID:18757743
Rell2Chinchillapositive regulation of p38MAPK cascade involved_inISORELL2 (Homo sapiens)9068941 PMID:28688764UniProtPMID:28688764

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rell2Chinchillabasement membrane located_inISORell2 (Mus musculus)9068941 PMID:18757743MGIPMID:18757743
Rell2Chinchillaextracellular matrix located_inISORell2 (Mus musculus)9068941 PMID:18757743MGIPMID:18757743

Molecular Function

  


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Rell2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,134,642 - 12,138,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,134,642 - 12,138,071 (-)NCBIChiLan1.0ChiLan1.0
RELL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,636,997 - 141,641,064 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,636,950 - 141,641,064 (+)EnsemblGRCh38hg38GRCh38
GRCh375141,016,564 - 141,020,631 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,996,779 - 141,000,815 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,996,776 - 141,000,814NCBI
Celera5137,093,245 - 137,097,359 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,161,024 - 136,165,138 (+)NCBIHuRef
CHM1_15140,449,798 - 140,453,912 (+)NCBICHM1_1
T2T-CHM13v2.05142,163,003 - 142,167,070 (+)NCBIT2T-CHM13v2.0
Rell2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,088,107 - 38,092,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,088,132 - 38,092,232 (+)EnsemblGRCm39 Ensembl
GRCm381837,955,054 - 37,959,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,955,079 - 37,959,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv371838,115,213 - 38,118,833 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,081,601 - 38,085,137 (+)NCBIMGSCv36mm8
Celera1839,298,873 - 39,302,563 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.83NCBI
Rell2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,041,204 - 30,045,193 (+)NCBIGRCr8
mRatBN7.21829,789,996 - 29,793,986 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,790,415 - 29,793,986 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1829,894,721 - 29,898,291 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,656,919 - 30,660,489 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01829,992,265 - 29,995,834 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,094,965 - 31,098,536 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,094,965 - 31,098,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,783,005 - 30,786,576 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,876,604 - 30,880,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,903,249 - 30,906,821 (+)NCBI
Celera1829,435,000 - 29,438,570 (+)NCBICelera
Cytogenetic Map18p11NCBI
RELL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,885,813 - 136,890,857 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,025,978 - 135,030,149 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,997,811 - 137,002,695 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,110,407 - 143,114,522 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,110,359 - 143,118,157 (+)Ensemblpanpan1.1panPan2
RELL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,598,175 - 36,602,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,599,149 - 36,602,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,649,788 - 33,655,890 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,052,095 - 37,058,190 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,052,101 - 37,056,135 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,126,592 - 34,132,694 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,938,124 - 34,944,312 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,745,408 - 35,751,510 (+)NCBIUU_Cfam_GSD_1.0
Rell2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,946,282 - 150,955,942 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,522,701 - 12,529,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,520,262 - 12,530,482 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,288,004 - 143,293,031 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,287,507 - 143,291,683 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,490,129 - 149,494,301 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RELL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,263,226 - 44,267,358 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,264,570 - 44,266,734 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,585,280 - 33,589,464 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rell2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774864,498 - 867,803 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774863,924 - 876,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSCLAT00000017238   ⟹   ENSCLAP00000017070
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541512,134,642 - 12,138,065 (-)Ensembl
RefSeq Acc Id: XM_005380727   ⟹   XP_005380784
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541512,134,642 - 12,138,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512220   ⟹   XP_013367674
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541512,134,642 - 12,138,056 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512221   ⟹   XP_013367675
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541512,134,642 - 12,138,065 (-)NCBI
Sequence:
Protein RefSeqs XP_005380784 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367674 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017070
  ENSCLAP00000017070.1
RefSeq Acc Id: XP_005380784   ⟸   XM_005380727
- UniProtKB: A0A8C2VKX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367675   ⟸   XM_013512221
- UniProtKB: A0A8C2VKX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367674   ⟸   XM_013512220
- UniProtKB: A0A8C2VKX8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000017070   ⟸   ENSCLAT00000017238



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000011716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017238 ENTREZGENE
  ENSCLAT00000017238.1 UniProtKB/TrEMBL
InterPro RELL2 UniProtKB/TrEMBL
  TNF_rcpt_RELT UniProtKB/TrEMBL
NCBI Gene Rell2 ENTREZGENE
PANTHER PTHR31481 UniProtKB/TrEMBL
  RELT-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam RELT UniProtKB/TrEMBL
UniProt A0A8C2VKX8 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rell2  RELT like 2    RELT-like 2  Symbol and/or name change 5135510 APPROVED