Myoc (myocilin) - Rat Genome Database

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Gene: Myoc (myocilin) Chinchilla lanigera
Analyze
Symbol: Myoc
Name: myocilin
RGD ID: 8776781
Description: ENCODES a protein that exhibits fibronectin binding (ortholog); frizzled binding (ortholog); myosin light chain binding (ortholog); INVOLVED IN bone development (ortholog); cellular response to nerve growth factor stimulus (ortholog); clustering of voltage-gated sodium channels (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); Brain Injuries (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasmic vesicle (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myocilin, trabecular meshwork inducible glucocorticoid response
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,182,046 - 12,199,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,182,115 - 12,194,683 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Myoc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,182,046 - 12,199,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,182,115 - 12,194,683 (-)NCBIChiLan1.0ChiLan1.0
MYOC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,635,417 - 171,652,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,635,417 - 171,652,688 (-)EnsemblGRCh38hg38GRCh38
GRCh371171,604,557 - 171,621,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,871,180 - 169,888,396 (-)NCBINCBI36Build 36hg18NCBI36
Build 341168,336,215 - 168,353,430NCBI
Celera1144,713,951 - 144,731,166 (-)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1142,827,834 - 142,845,046 (-)NCBIHuRef
CHM1_11173,026,640 - 173,043,840 (-)NCBICHM1_1
T2T-CHM13v2.01170,991,882 - 171,009,153 (-)NCBIT2T-CHM13v2.0
Myoc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,466,719 - 162,477,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,466,724 - 162,477,262 (+)EnsemblGRCm39 Ensembl
GRCm381162,639,150 - 162,649,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,639,155 - 162,649,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,569,281 - 164,579,825 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361164,475,844 - 164,486,368 (+)NCBIMGSCv36mm8
Celera1165,085,895 - 165,096,434 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.29NCBI
Myoc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81377,509,963 - 77,520,361 (+)NCBIGRCr8
mRatBN7.21374,976,730 - 74,987,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,976,730 - 74,987,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1377,554,373 - 77,564,765 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,858,850 - 78,869,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01376,118,721 - 76,129,168 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01380,517,531 - 80,527,928 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1380,517,536 - 80,527,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01385,409,611 - 85,420,008 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41378,303,830 - 78,314,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11378,318,017 - 78,328,415 (+)NCBI
Celera1374,726,592 - 74,736,986 (+)NCBICelera
Cytogenetic Map13q22NCBI
MYOC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2178,104,233 - 78,121,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1177,778,772 - 77,797,111 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,128,541 - 147,146,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11150,841,630 - 150,858,628 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1150,841,630 - 150,858,628 (-)Ensemblpanpan1.1panPan2
MYOC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1727,335,314 - 27,346,821 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl727,335,314 - 27,346,820 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,857,046 - 26,868,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0727,136,587 - 27,148,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl727,136,391 - 27,148,079 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,988,106 - 26,999,596 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0727,022,462 - 27,033,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0727,264,790 - 27,276,291 (+)NCBIUU_Cfam_GSD_1.0
Myoc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934497,697,971 - 97,710,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648115,544,660 - 15,556,857 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648115,544,733 - 15,556,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,087,378 - 114,098,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,087,370 - 114,098,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,551,261 - 125,562,662 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYOC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12557,458,615 - 57,475,329 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2557,459,374 - 57,475,322 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605559,088,230 - 59,104,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myoc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477110,065,788 - 10,080,680 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477110,066,170 - 10,080,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017581   ⟹   ENSCLAP00000017411
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540612,182,046 - 12,199,669 (-)Ensembl
RefSeq Acc Id: XM_005374847   ⟹   XP_005374904
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540612,182,115 - 12,194,683 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017411
  ENSCLAP00000017411.1
RefSeq Acc Id: XP_005374904   ⟸   XM_005374847
- UniProtKB: A0A8C2VNS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000017411   ⟸   ENSCLAT00000017581
Protein Domains
Olfactomedin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011961 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017581 ENTREZGENE
  ENSCLAT00000017581.1 UniProtKB/TrEMBL
InterPro Olfac-like_dom UniProtKB/TrEMBL
  Olfactomedin-like_domain UniProtKB/TrEMBL
NCBI Gene Myoc ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/TrEMBL
  PTHR23192:SF33 UniProtKB/TrEMBL
Pfam OLF UniProtKB/TrEMBL
PROSITE OLF UniProtKB/TrEMBL
SMART OLF UniProtKB/TrEMBL
UniProt A0A8C2VNS9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Myoc  myocilin    myocilin, trabecular meshwork inducible glucocorticoid response  Symbol and/or name change 5135510 APPROVED