MYOC (myocilin) - Rat Genome Database

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Gene: MYOC (myocilin) Sus scrofa
Analyze
Symbol: MYOC
Name: myocilin
RGD ID: 13905820
Description: ENCODES a protein that exhibits fibronectin binding (inferred); frizzled binding (inferred); metal ion binding (inferred); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); nerve development (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); Brain Injuries (ortholog); FOUND IN mesaxon (ortholog); myelin sheath abaxonal region (ortholog); Schmidt-Lanterman incisure (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,087,378 - 114,098,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,087,370 - 114,098,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,551,261 - 125,562,662 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:15277488   PMID:30032202  


Genomics

Comparative Map Data
MYOC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,087,378 - 114,098,745 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,087,370 - 114,098,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,551,261 - 125,562,662 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYOC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,635,417 - 171,652,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,635,417 - 171,652,688 (-)EnsemblGRCh38hg38GRCh38
GRCh371171,604,557 - 171,621,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,871,180 - 169,888,396 (-)NCBINCBI36Build 36hg18NCBI36
Build 341168,336,215 - 168,353,430NCBI
Celera1144,713,951 - 144,731,166 (-)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1142,827,834 - 142,845,046 (-)NCBIHuRef
CHM1_11173,026,640 - 173,043,840 (-)NCBICHM1_1
T2T-CHM13v2.01170,991,882 - 171,009,153 (-)NCBIT2T-CHM13v2.0
Myoc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,466,719 - 162,477,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,466,724 - 162,477,262 (+)EnsemblGRCm39 Ensembl
GRCm381162,639,150 - 162,649,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,639,155 - 162,649,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,569,281 - 164,579,825 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361164,475,844 - 164,486,368 (+)NCBIMGSCv36mm8
Celera1165,085,895 - 165,096,434 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.29NCBI
Myoc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81377,509,963 - 77,520,361 (+)NCBIGRCr8
mRatBN7.21374,976,730 - 74,987,128 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,976,730 - 74,987,127 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1377,554,373 - 77,564,765 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,858,850 - 78,869,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01376,118,721 - 76,129,168 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01380,517,531 - 80,527,928 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1380,517,536 - 80,527,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01385,409,611 - 85,420,008 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41378,303,830 - 78,314,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11378,318,017 - 78,328,415 (+)NCBI
Celera1374,726,592 - 74,736,986 (+)NCBICelera
Cytogenetic Map13q22NCBI
Myoc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,182,046 - 12,199,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,182,115 - 12,194,683 (-)NCBIChiLan1.0ChiLan1.0
MYOC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2178,104,233 - 78,121,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1177,778,772 - 77,797,111 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,128,541 - 147,146,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11150,841,630 - 150,858,628 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1150,841,630 - 150,858,628 (-)Ensemblpanpan1.1panPan2
MYOC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1727,335,314 - 27,346,821 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl727,335,314 - 27,346,820 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,857,046 - 26,868,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0727,136,587 - 27,148,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl727,136,391 - 27,148,079 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,988,106 - 26,999,596 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0727,022,462 - 27,033,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0727,264,790 - 27,276,291 (+)NCBIUU_Cfam_GSD_1.0
Myoc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934497,697,971 - 97,710,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648115,544,660 - 15,556,857 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648115,544,733 - 15,556,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12557,458,615 - 57,475,329 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2557,459,374 - 57,475,322 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605559,088,230 - 59,104,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myoc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477110,065,788 - 10,080,680 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477110,066,170 - 10,080,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MYOC
495 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 1 2 3 1 2
Below cutoff 6 2 2 2 3 2 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000050117   ⟹   ENSSSCP00000040842
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9114,087,378 - 114,098,745 (-)Ensembl
RefSeq Acc Id: NM_213986   ⟹   NP_999151
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19114,087,378 - 114,098,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013977636   ⟹   XP_013833090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19114,087,370 - 114,098,765 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013833090   ⟸   XM_013977636
- Peptide Label: isoform X1
- UniProtKB: A0A8D0I9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999151   ⟸   NM_213986
- Peptide Label: precursor
- UniProtKB: Q8HZW2 (UniProtKB/TrEMBL),   A0A4X1UKQ6 (UniProtKB/TrEMBL),   A0A8D0I9C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000040842   ⟸   ENSSSCT00000050117
Protein Domains
Olfactomedin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005010622 UniProtKB/TrEMBL
  ENSSSCG00015032901 UniProtKB/TrEMBL
  ENSSSCG00025042708 UniProtKB/TrEMBL
  ENSSSCG00030032766 UniProtKB/TrEMBL
  ENSSSCG00035048265 UniProtKB/TrEMBL
  ENSSSCG00040072288 UniProtKB/TrEMBL
  ENSSSCG00045029505 UniProtKB/TrEMBL
  ENSSSCG00050067834 UniProtKB/TrEMBL
  ENSSSCG00055008791 UniProtKB/TrEMBL
  ENSSSCG00060015939 UniProtKB/TrEMBL
  ENSSSCG00065029186 UniProtKB/TrEMBL
  ENSSSCG00070017570 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050117 ENTREZGENE
  ENSSSCT00000050117.3 UniProtKB/TrEMBL
  ENSSSCT00005016428.1 UniProtKB/TrEMBL
  ENSSSCT00015043679.1 UniProtKB/TrEMBL
  ENSSSCT00025057932.1 UniProtKB/TrEMBL
  ENSSSCT00030045307.1 UniProtKB/TrEMBL
  ENSSSCT00035064304.1 UniProtKB/TrEMBL
  ENSSSCT00040099492.1 UniProtKB/TrEMBL
  ENSSSCT00045050385.1 UniProtKB/TrEMBL
  ENSSSCT00050092550.1 UniProtKB/TrEMBL
  ENSSSCT00055017171.1 UniProtKB/TrEMBL
  ENSSSCT00060021228.1 UniProtKB/TrEMBL
  ENSSSCT00065039395.1 UniProtKB/TrEMBL
  ENSSSCT00070034669.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
InterPro Olfac-like_dom UniProtKB/TrEMBL
KEGG Report ssc:397046 UniProtKB/TrEMBL
NCBI Gene MYOC ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/TrEMBL
  PTHR23192:SF33 UniProtKB/TrEMBL
Pfam OLF UniProtKB/TrEMBL
PROSITE OLF UniProtKB/TrEMBL
SMART OLF UniProtKB/TrEMBL
UniProt A0A4X1UKQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I9C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NEH3_PIG UniProtKB/TrEMBL
  A0A8D1IIC3_PIG UniProtKB/TrEMBL
  A0A8D1KL03_PIG UniProtKB/TrEMBL
  B0JF99_PIG UniProtKB/TrEMBL
  Q8HZW2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90535 ENTREZGENE