Fbln5 (fibulin 5) - Rat Genome Database

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Gene: Fbln5 (fibulin 5) Chinchilla lanigera
Analyze
Symbol: Fbln5
Name: fibulin 5
RGD ID: 8739702
Description: ENCODES a protein that exhibits integrin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN elastic fiber assembly (ortholog); extracellular matrix organization (ortholog); intramembranous bone growth (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); adult respiratory distress syndrome (ortholog); age related macular degeneration (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); elastic fiber (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibulin-5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543814,071,410 - 14,145,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543814,073,927 - 14,144,644 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Fbln5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543814,071,410 - 14,145,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543814,073,927 - 14,144,644 (-)NCBIChiLan1.0ChiLan1.0
FBLN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381491,869,411 - 91,947,694 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1491,869,411 - 91,947,987 (-)EnsemblGRCh38hg38GRCh38
GRCh371492,335,755 - 92,414,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361491,405,508 - 91,483,788 (-)NCBINCBI36Build 36hg18NCBI36
Build 341491,405,508 - 91,483,788NCBI
Celera1472,388,374 - 72,466,655 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1472,516,509 - 72,594,687 (-)NCBIHuRef
CHM1_11492,273,834 - 92,352,362 (-)NCBICHM1_1
T2T-CHM13v2.01486,098,901 - 86,177,154 (-)NCBIT2T-CHM13v2.0
Fbln5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912101,712,820 - 101,785,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12101,712,824 - 101,785,314 (-)EnsemblGRCm39 Ensembl
GRCm3812101,746,565 - 101,819,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12101,746,565 - 101,819,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712102,984,775 - 103,057,265 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612102,147,615 - 102,228,101 (-)NCBIMGSCv36mm8
Celera12102,955,562 - 103,028,678 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.29NCBI
Fbln5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86126,664,100 - 126,742,847 (-)NCBIGRCr8
mRatBN7.26120,899,219 - 120,977,829 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,899,224 - 120,977,755 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6121,049,874 - 121,128,342 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06121,346,562 - 121,425,038 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06120,681,448 - 120,759,930 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06125,644,797 - 125,723,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6125,644,804 - 125,723,944 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,856,694 - 134,935,853 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46126,018,541 - 126,098,234 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16126,022,288 - 126,102,052 (-)NCBI
Celera6118,399,373 - 118,476,665 (-)NCBICelera
Cytogenetic Map6q32NCBI
FBLN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21593,027,865 - 93,106,837 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11492,244,375 - 92,323,347 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01472,504,240 - 72,583,160 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11491,848,430 - 91,927,470 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1491,848,430 - 91,927,304 (-)Ensemblpanpan1.1panPan2
FBLN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.181,162,203 - 1,231,809 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl81,162,923 - 1,231,719 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha81,181,396 - 1,250,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.081,211,329 - 1,280,901 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl81,211,330 - 1,280,859 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.181,149,346 - 1,218,919 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.081,105,810 - 1,175,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.081,226,613 - 1,296,196 (-)NCBIUU_Cfam_GSD_1.0
Fbln5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864013,257,820 - 13,330,662 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733137,207 - 209,473 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733136,374 - 200,106 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBLN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7113,423,632 - 113,512,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17113,423,629 - 113,526,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,031,698 - 120,120,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBLN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12469,626,498 - 69,703,146 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2469,626,339 - 69,703,108 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605356,876,363 - 56,952,959 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbln5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473410,768,751 - 10,843,654 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473410,768,920 - 10,840,740 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018818   ⟹   ENSCLAP00000018635
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543814,071,410 - 14,145,070 (-)Ensembl
RefSeq Acc Id: XM_005390308   ⟹   XP_005390365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543814,073,927 - 14,144,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390309   ⟹   XP_005390366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543814,073,927 - 14,144,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390310   ⟹   XP_005390367
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543814,073,927 - 14,144,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390311   ⟹   XP_005390368
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543814,073,927 - 14,144,644 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390365 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390366 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390367 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390368 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018635
  ENSCLAP00000018635.1
RefSeq Acc Id: XP_005390368   ⟸   XM_005390311
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005390367   ⟸   XM_005390310
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VWF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005390366   ⟸   XM_005390309
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005390365   ⟸   XM_005390308
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000018635   ⟸   ENSCLAT00000018818
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018818 ENTREZGENE
  ENSCLAT00000018818.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro cEGF UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
NCBI Gene Fbln5 ENTREZGENE
PANTHER CD93 MOLECULE UniProtKB/TrEMBL
  PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A8C2VWF2 ENTREZGENE, UniProtKB/TrEMBL