Pcsk6 (proprotein convertase subtilisin/kexin type 6) - Rat Genome Database

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Gene: Pcsk6 (proprotein convertase subtilisin/kexin type 6) Chinchilla lanigera
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Symbol: Pcsk6
Name: proprotein convertase subtilisin/kexin type 6
RGD ID: 8938337
Description: ENCODES a protein that exhibits endopeptidase activity (ortholog); heparin binding (ortholog); nerve growth factor binding (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); glycoprotein metabolic process (ortholog); nerve growth factor production (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,184,768 - 28,314,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,184,768 - 28,314,697 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Pcsk6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,184,768 - 28,314,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,184,768 - 28,314,697 (-)NCBIChiLan1.0ChiLan1.0
PCSK6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl15101,289,784 - 101,525,202 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl15101,297,142 - 101,525,202 (-)EnsemblGRCh38hg38GRCh38
GRCh3815101,303,933 - 101,489,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3715101,844,138 - 102,029,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,661,656 - 99,847,710 (-)NCBINCBI36hg18NCBI36
Celera1578,256,961 - 78,396,788 (-)NCBI
Cytogenetic Map15q26.3NCBI
HuRef1577,966,553 - 78,106,326 (-)NCBIHuRef
CHM1_115101,685,119 - 101,871,305 (-)NCBICHM1_1
Pcsk6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,511,884 - 65,700,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl765,511,482 - 65,700,134 (+)Ensembl
GRCm38765,862,136 - 66,050,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,861,734 - 66,050,386 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,007,022 - 73,195,272 (+)NCBIGRCm37mm9NCBIm37
MGSCv36765,740,684 - 65,929,336 (+)NCBImm8
Celera763,292,677 - 63,485,752 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.36NCBI
Pcsk6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21119,428,978 - 119,627,626 (+)NCBI
Rnor_6.0 Ensembl1126,749,508 - 126,947,392 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01126,749,508 - 126,947,392 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01127,884,080 - 128,033,742 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,324,843 - 120,476,913 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11120,403,185 - 120,555,256 (+)NCBI
Celera1111,644,666 - 111,839,248 (+)NCBICelera
Cytogenetic Map1q22NCBI
PCSK6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11599,312,512 - 99,456,295 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1599,312,512 - 99,460,444 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01580,029,225 - 80,226,027 (-)NCBIMhudiblu_PPA_v0panPan3
PCSK6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1339,582,804 - 39,768,838 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl339,582,819 - 39,767,929 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha342,273,277 - 42,458,425 (+)NCBI
ROS_Cfam_1.0339,974,680 - 40,160,403 (+)NCBI
UMICH_Zoey_3.1339,508,310 - 39,693,874 (+)NCBI
UNSW_CanFamBas_1.0339,735,714 - 39,930,680 (+)NCBI
UU_Cfam_GSD_1.0339,946,780 - 40,132,048 (+)NCBI
Pcsk6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,773,158 - 143,960,126 (-)NCBI
SpeTri2.0NW_0049364832,374,357 - 2,561,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCSK6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,508,636 - 145,697,009 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,508,658 - 145,697,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,243,196 - 311,347,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCSK6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,758,198 - 19,949,875 (-)NCBI
ChlSab1.1 Ensembl2919,754,625 - 19,949,382 (-)Ensembl
Pcsk6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247683,336,374 - 3,517,697 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020463   ⟹   ENSCLAP00000020267
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541628,184,768 - 28,314,759 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020464   ⟹   ENSCLAP00000020268
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541628,186,089 - 28,314,700 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020465   ⟹   ENSCLAP00000020269
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541628,186,089 - 28,314,700 (-)Ensembl
RefSeq Acc Id: XM_013512588   ⟹   XP_013368042
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541628,184,768 - 28,314,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512589   ⟹   XP_013368043
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541628,184,768 - 28,314,697 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368042 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368043 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013368043   ⟸   XM_013512589
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013368042   ⟸   XM_013512588
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000020267   ⟸   ENSCLAT00000020463
RefSeq Acc Id: ENSCLAP00000020268   ⟸   ENSCLAT00000020464
RefSeq Acc Id: ENSCLAP00000020269   ⟸   ENSCLAT00000020465


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013888 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000020267 ENTREZGENE
  ENSCLAP00000020268 ENTREZGENE
Ensembl Transcript ENSCLAT00000020463 ENTREZGENE
  ENSCLAT00000020464 ENTREZGENE
NCBI Gene Pcsk6 ENTREZGENE