RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Arbovirus Infections
Accession: DOID:9007579
browse the term
Definition: Infections caused by arthropod-borne viruses, general or unspecified.
Synonyms: exact_synonym: Arbovirus Infection
primary_id: MESH:D001102
xref: EFO:1001269
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PECAM1
platelet and endothelial cell adhesion molecule 1
ISO
protein:decreased expression:serum (human)
RGD
PMID:25539588
RGD:11541121
NCBI chr12:14,667,643...14,723,296
Ensembl chr12:14,649,044...14,723,293
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C3
complement C3
ISO
protein:increased expression:serum
RGD
PMID:3361150
RGD:11041575
NCBI chr 2:72,431,470...72,471,622
Ensembl chr 2:72,431,212...72,472,228
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CFB
complement factor B
ISO
protein:increased expression:serum
RGD
PMID:3361150
RGD:11041575
NCBI chr 7:24,034,077...24,040,523
Ensembl chr 7:24,033,740...24,041,179
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CXCL10
C-X-C motif chemokine ligand 10
ISO
RGD
PMID:14507644
RGD:5135450
NCBI chr 8:71,693,641...71,695,948
Ensembl chr 8:71,693,339...71,695,948
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CXCL9
C-X-C motif chemokine ligand 9
ISO
RGD
PMID:14507644
RGD:5135450
NCBI chr 8:71,665,541...71,670,236
Ensembl chr 8:71,663,501...71,670,271
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IFNA1
interferon, alpha 1
susceptibility
ISO
DNA:SNP:promoter: -1823G>A (rs1332190)(human)
RGD
PMID:26694082
RGD:36174029
NCBI chr 1:201,515,835...201,516,477
Ensembl chr 1:201,515,809...201,516,488
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CD209
CD209 molecule
severity susceptibility
ISO
DNA:SNP:promoter: -336G>A (human) ClinVar Annotator: match by term: Dengue fever, protection against | ClinVar Annotator: match by term: Dengue virus, susceptibility to
RGD OMIM ClinVar
PMID:15564514 PMID:15838506 PMID:16274635 PMID:16379498 PMID:25741868
RGD:39939064
NCBI chr 2:71,394,414...71,397,711
Ensembl chr 2:71,394,391...71,397,968
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CXCR2
C-X-C motif chemokine receptor 2
treatment
ISO
RGD
PMID:30098206
RGD:39938828
NCBI chr15:120,219,657...120,230,203
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F2
coagulation factor II, thrombin
ISO
RGD
PMID:22138554
RGD:40818430
NCBI chr 2:15,793,257...15,819,151
Ensembl chr 2:15,791,455...15,819,137
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GC
GC vitamin D binding protein
ISO
protein:increased expression:plasma
RGD
PMID:19845402
RGD:5509870
NCBI chr 8:68,326,293...68,360,262
Ensembl chr 8:68,326,299...68,360,262
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IDO1
indoleamine 2,3-dioxygenase 1
treatment
ISO
RGD
PMID:31821895
RGD:39939074
NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,473
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IL1RL1
interleukin 1 receptor like 1
treatment
ISO
RGD
PMID:30098206
RGD:39938828
NCBI chr 3:51,868,549...51,902,454
Ensembl chr 3:51,846,792...51,951,383
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IL29
interleukin 29 (interferon, lambda 1)
ameliorates
ISO
protein:increased expression:blood serum (human)
RGD
PMID:28238051
RGD:126848771
NCBI chr17:51,484,658...51,485,233
Ensembl chr17:51,484,658...51,485,233
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IL33
interleukin 33
severity
ISO
RGD
PMID:30098206
RGD:39938828
NCBI chr 1:215,899,830...215,941,944
Ensembl chr 1:215,899,436...215,941,840
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MAPK8
mitogen-activated protein kinase 8
ISO
protein:increased phosphorylation:liver (mouse)
RGD
PMID:28188818
RGD:150340680
NCBI chr14:88,988,914...89,108,875
Ensembl chr14:88,988,949...89,108,874
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MIR21
microRNA mir-21
ISO
RNA:increased expression:serum:
RGD
PMID:26941580
RGD:41404658
NCBI chr12:36,065,267...36,065,358
Ensembl chr12:36,065,267...36,065,358
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STAT2
signal transducer and activator of transcription 2
susceptibility
ISO
RGD
PMID:21075352 PMID:21379341
RGD:41789625 RGD:41789629
NCBI chr 5:21,733,030...21,748,960
Ensembl chr 5:21,733,035...21,751,354
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CD1D
CD1d molecule
disease_progression
ISO
protein:increased expression:cd14-positive monocyte (human)
RGD
PMID:24945350
RGD:127345113
NCBI chr 4:92,096,670...92,101,177
Ensembl chr 4:92,094,700...92,101,095
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CD209
CD209 molecule
severity susceptibility
ISO
DNA:SNPs:introns, promoter:multiple (human) DNA:SNP:promoter: -336 A>G (rs4804803) (human)
RGD
PMID:15838506 PMID:21245921
RGD:39938993 RGD:41410809
NCBI chr 2:71,394,414...71,397,711
Ensembl chr 2:71,394,391...71,397,968
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CLEC5A
C-type lectin domain containing 5A
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:18496526
NCBI chr18:8,004,423...8,014,390
Ensembl chr18:8,004,448...8,016,308
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IL21
interleukin 21
severity
ISO
protein:increased expression:blood serum (human)
RGD
PMID:24858204
RGD:127285368
NCBI chr 8:101,532,742...101,540,712
Ensembl chr 8:101,532,531...101,541,713
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IL29
interleukin 29 (interferon, lambda 1)
ameliorates
ISO
DNA:SNP:enhancer:-1043C>T (rs7247086) (human)
RGD
PMID:31981768
RGD:126848742
NCBI chr17:51,484,658...51,485,233
Ensembl chr17:51,484,658...51,485,233
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OSBP
oxysterol binding protein
ISO
mRNA:increased expression:peripheral blood mononuclear cell
RGD
PMID:28241052
RGD:41404654
NCBI chr 2:11,876,294...11,911,660
Ensembl chr 2:11,876,324...11,911,656
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PLCE1
phospholipase C epsilon 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:22001756
NCBI chr14:105,422,628...105,764,736
Ensembl chr14:105,458,916...105,764,737
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SLC6A4
solute carrier family 6 member 4
severity
ISO
DNA;polymorphism:5'utr: (rs25531) (human)
RGD
PMID:30452889
RGD:38676265
NCBI chr12:46,285,995...46,328,377
Ensembl chr12:46,285,997...46,314,378
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TAP2
transporter 2, ATP binding cassette subfamily B member
susceptibility
ISO
DNA:SNPs: :
RGD
PMID:18071882
RGD:6482261
NCBI chr 7:25,045,085...25,056,915
Ensembl chr 7:25,045,685...25,056,300
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CAMK2N1
calcium/calmodulin dependent protein kinase II inhibitor 1
ISO
RGD
PMID:17010311
RGD:18337278
NCBI chr 6:78,730,204...78,734,232
Ensembl chr 6:78,730,206...78,733,740
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RIPK3
receptor interacting serine/threonine kinase 3
ameliorates
ISO
RGD
PMID:32265853
RGD:127229907
NCBI chr 7:74,951,145...74,955,255
Ensembl chr 7:74,951,145...74,955,251
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CCL20
C-C motif chemokine ligand 20
ISO
protein:increased expression:synovial fluid
RGD
PMID:23371320
RGD:7488895
NCBI chr15:129,172,743...129,176,069
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CXCR2
C-X-C motif chemokine receptor 2
severity
ISO
RGD
PMID:12847259
RGD:7257681
NCBI chr15:120,219,657...120,230,203
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NOD2
nucleotide binding oligomerization domain containing 2
ISO
RGD
PMID:21387014
RGD:5508754
NCBI chr 6:34,132,127...34,167,446
Ensembl chr 6:34,130,938...34,177,534
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PLAUR
plasminogen activator, urokinase receptor
ISO
mRNA:increased expression:skin
RGD
PMID:19461880
RGD:6483813
NCBI chr 6:50,489,773...50,505,453
Ensembl chr 6:50,489,777...50,505,418
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CCL2
chemokine (C-C motif) ligand 2
ISO
protein:increased expression:serum (human)
RGD
PMID:16358960
RGD:11528571
NCBI chr12:40,798,109...40,800,013
Ensembl chr12:40,798,109...40,800,026
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CD40
CD40 molecule
ISO
protein:increased expression:cerebrospinal fluid (human)
RGD
PMID:16463218
RGD:11352252
NCBI chr17:48,286,116...48,298,188
Ensembl chr17:48,286,029...48,298,528
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CD40LG
CD40 ligand
ISO
protein:increased expression:cerebrospinal fluid (human)
RGD
PMID:16463218
RGD:11352252
NCBI chr X:111,778,666...111,788,901
Ensembl chr X:111,778,493...111,789,709
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CXCL8
C-X-C motif chemokine ligand 8
treatment
ISO
RGD
PMID:24239846
RGD:39939054
NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861
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LOC110258578
interleukin-1 beta-like
ISO
RGD
PMID:23134838
RGD:7193053
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RAPGEF3
Rap guanine nucleotide exchange factor 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24218580
NCBI chr 5:78,101,286...78,134,150
Ensembl chr 5:78,101,299...78,134,105
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CD40
CD40 molecule
ISO
protein:increased expression:cerebrospinal fluid (human)
RGD
PMID:16463218
RGD:11352252
NCBI chr17:48,286,116...48,298,188
Ensembl chr17:48,286,029...48,298,528
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CD40LG
CD40 ligand
ISO
protein:increased expression:cerebrospinal fluid (human)
RGD
PMID:16463218
RGD:11352252
NCBI chr X:111,778,666...111,788,901
Ensembl chr X:111,778,493...111,789,709
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IFIH1
interferon induced with helicase C domain 1
ISO
mRNA:increased expression:brain
RGD
PMID:24173226
RGD:126781836
NCBI chr15:68,930,998...68,985,145
Ensembl chr15:68,928,254...68,985,083
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LCN2
lipocalin 2
ISO
mRNA,protein:increased expression:brain
RGD
PMID:24173226
RGD:126781836
NCBI chr 1:268,609,975...268,614,651
Ensembl chr 1:268,609,887...268,614,644
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RIGI
RNA sensor RIG-I
ISO
mRNA:increased expression:brain
RGD
PMID:24173226
RGD:126781836
NCBI chr10:33,891,720...33,976,151
Ensembl chr10:33,891,763...33,933,455
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RNASEL
ribonuclease L
disease_progression
ISO
RGD
PMID:16809306
RGD:40902815
NCBI chr 9:123,895,045...123,910,386
Ensembl chr 9:123,893,294...123,910,398
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STING1
stimulator of interferon response cGAMP interactor 1
severity
ISO
RGD
PMID:31415679
RGD:39128224
NCBI chr 2:141,359,402...141,367,222
Ensembl chr 2:141,358,993...141,367,198
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TLR3
toll like receptor 3
ISO
mRNA:increased expression:brain
RGD
PMID:24173226
RGD:126781836
NCBI chr15:46,966,262...46,977,774
Ensembl chr15:46,969,006...46,979,291
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CCR5
C-C motif chemokine receptor 5
ISO
ClinVar Annotator: match by term: West Nile virus, susceptibility to
ClinVar OMIM
PMID:8639485 PMID:8751444 PMID:8756719 PMID:9055842 PMID:9132277 PMID:9140404 PMID:9207783 PMID:9466996 PMID:9511755 PMID:9585595 PMID:9600249 PMID:9768627 PMID:10520641 PMID:10615909 PMID:10803840 PMID:11081537 PMID:11403804 PMID:11403814 PMID:11517319 PMID:11781692 PMID:12874407 PMID:15744032 PMID:15863470 PMID:16216086 PMID:16248677 PMID:16418398 PMID:19017985 PMID:19073967 PMID:25741868 PMID:28492532 More...
NCBI chr13:29,382,383...29,387,902
Ensembl chr13:29,383,303...29,387,895
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IRF5
interferon regulatory factor 5
disease_progression
ISO
RGD
PMID:25031348
RGD:40924561
NCBI chr18:19,678,377...19,691,154
Ensembl chr18:19,678,687...19,691,243
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MAVS
mitochondrial antiviral signaling protein
severity
ISO
RGD
PMID:28094802
RGD:40903045
NCBI chr17:31,850,646...31,869,273
Ensembl chr17:31,850,900...31,869,188
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RFC1
replication factor C subunit 1
susceptibility
ISO
DNA:silent mutation:CDS:p.P847P (rs2066786) (human)
RGD
PMID:21881118
RGD:41410434
NCBI chr 8:30,552,369...30,635,932
Ensembl chr 8:30,552,400...30,635,867
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S100B
S100 calcium binding protein B
ISO
RGD
PMID:19790244
RGD:5508797
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STAT2
signal transducer and activator of transcription 2
susceptibility
ISO
RGD
PMID:31043530
RGD:41789622
NCBI chr 5:21,733,030...21,748,960
Ensembl chr 5:21,733,035...21,751,354
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ATF4
activating transcription factor 4
ISO
mRNA:increased expression:brain
RGD
PMID:30241539
RGD:32733625
NCBI chr 5:8,742,964...8,745,752
Ensembl chr 5:8,742,967...8,745,368
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ATG16L1
autophagy related 16 like 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:28694387
NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468
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DDIT3
DNA damage inducible transcript 3
ISO
mRNA:increased expression:brain
RGD
PMID:30241539
RGD:32733625
NCBI chr 5:22,785,441...22,789,867
Ensembl chr 5:22,785,445...22,789,829
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EDEM1
ER degradation enhancing alpha-mannosidase like protein 1
ISO
mRNA:increased expression:brain
RGD
PMID:30241539
RGD:32733625
NCBI chr13:61,703,601...61,732,231
Ensembl chr13:61,703,621...61,732,119
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ERN1
endoplasmic reticulum to nucleus signaling 1
ISO
RGD
PMID:30241539
RGD:32733625
NCBI chr12:14,881,913...14,963,290
Ensembl chr12:14,881,923...14,963,284
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HSPA5
heat shock protein family A (Hsp70) member 5
ISO
mRNA,protein:increased expression:brain
RGD
PMID:30241539
RGD:32733625
NCBI chr 1:265,930,044...265,934,959
Ensembl chr 1:265,930,045...265,934,894
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PPP1R15A
protein phosphatase 1 regulatory subunit 15A
ISO
mRNA:increased expression:brain
RGD
PMID:30241539
RGD:32733625
NCBI chr 6:54,172,038...54,175,461
Ensembl chr 6:54,172,050...54,175,463
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STAT2
signal transducer and activator of transcription 2
susceptibility
ISO
human gene in a mouse model
RGD
PMID:28278235 PMID:29746837
RGD:41789627 RGD:41789631
NCBI chr 5:21,733,030...21,748,960
Ensembl chr 5:21,733,035...21,751,354
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XBP1
X-box binding protein 1
ISO
protein:increased expression:cerebellum, mesocephalon
RGD
PMID:30241539
RGD:32733625
NCBI chr14:46,011,239...46,016,526
Ensembl chr14:46,008,377...46,016,526
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