IL29 (interleukin 29 (interferon, lambda 1)) - Rat Genome Database

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Gene: IL29 (interleukin 29 (interferon, lambda 1)) Sus scrofa
Analyze
Symbol: IL29
Name: interleukin 29 (interferon, lambda 1)
RGD ID: 14073501
Description: ENCODES a protein that exhibits cytokine activity (inferred); interleukin-28 receptor binding (inferred); signaling receptor binding (inferred); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (inferred); defense response to virus (inferred); innate immune response (inferred); ASSOCIATED WITH asthma (ortholog); Chronic Hepatitis B (ortholog); Chronic Hepatitis C (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); interleukin-28 receptor complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: IL-29; interferon lamda 1; interleukin-29
RGD Orthologs
Human
Rat
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,484,658 - 51,485,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,484,658 - 51,485,233 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:21078342   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,484,658 - 51,485,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,484,658 - 51,485,233 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IFNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,296,407 - 39,298,673 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,296,407 - 39,298,673 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,787,047 - 39,789,313 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,478,805 - 44,481,152 (+)NCBINCBI36Build 36hg18NCBI36
Build 341944,478,804 - 44,481,152NCBI
Celera1936,588,638 - 36,590,984 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,233,484 - 36,235,831 (+)NCBIHuRef
CHM1_11939,787,771 - 39,790,118 (+)NCBICHM1_1
T2T-CHM13v2.01942,100,680 - 42,102,942 (+)NCBIT2T-CHM13v2.0
Ifnl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,926,184 - 92,927,830 (-)NCBIGRCr8
mRatBN7.2183,798,651 - 83,800,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,798,703 - 83,800,235 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0185,252,103 - 85,253,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,252,103 - 85,253,635 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,468,148 - 86,469,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1q21NCBI
LOC100976419
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,591,601 - 45,602,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,462,219 - 47,472,684 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,394,462 - 36,397,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,942,186 - 44,944,519 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,942,186 - 44,944,519 (+)Ensemblpanpan1.1panPan2
IL29L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,440,445 - 36,441,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,440,445 - 36,441,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,681,783 - 35,682,355 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,144,224 - 37,144,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,144,224 - 37,144,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,385,609 - 36,386,181 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,518,941 - 36,519,513 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,062,250 - 37,062,822 (+)NCBIUU_Cfam_GSD_1.0
LOC103234663
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,901,382 - 33,904,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,901,801 - 33,903,894 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,921,937 - 11,924,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in IL29
4 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 3 2 12 1 1 1
Below cutoff 3 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000055996   ⟹   ENSSSCP00000039493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1751,484,658 - 51,485,233 (+)Ensembl
RefSeq Acc Id: NM_001142837   ⟹   NP_001136309
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,484,658 - 51,485,233 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001136309   ⟸   NM_001142837
- Peptide Label: precursor
- UniProtKB: B8XX89 (UniProtKB/TrEMBL),   R9W8G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039493   ⟸   ENSSSCT00000055996


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036439 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028835 UniProtKB/TrEMBL
  ENSSSCG00025076757 UniProtKB/TrEMBL
  ENSSSCG00030004467 UniProtKB/TrEMBL
  ENSSSCG00035026625 UniProtKB/TrEMBL
  ENSSSCG00040034147 UniProtKB/TrEMBL
  ENSSSCG00045003845 UniProtKB/TrEMBL
  ENSSSCG00050077086 UniProtKB/TrEMBL
  ENSSSCG00055025863 UniProtKB/TrEMBL
  ENSSSCG00060035445 UniProtKB/TrEMBL
  ENSSSCG00065076008 UniProtKB/TrEMBL
  ENSSSCG00070017485 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055996 ENTREZGENE
  ENSSSCT00000055996.1 UniProtKB/TrEMBL
  ENSSSCT00005045715.1 UniProtKB/TrEMBL
  ENSSSCT00025106414.1 UniProtKB/TrEMBL
  ENSSSCT00030005947.1 UniProtKB/TrEMBL
  ENSSSCT00035035135.1 UniProtKB/TrEMBL
  ENSSSCT00040045943.1 UniProtKB/TrEMBL
  ENSSSCT00045006373.1 UniProtKB/TrEMBL
  ENSSSCT00050106046.1 UniProtKB/TrEMBL
  ENSSSCT00055051074.1 UniProtKB/TrEMBL
  ENSSSCT00060048037.1 UniProtKB/TrEMBL
  ENSSSCT00065104955.1 UniProtKB/TrEMBL
  ENSSSCT00070034516.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.60 UniProtKB/TrEMBL
InterPro IFN-lambda_sf UniProtKB/TrEMBL
  INF_lambda UniProtKB/TrEMBL
KEGG Report ssc:100217388 UniProtKB/TrEMBL
NCBI Gene IL29 ENTREZGENE
PANTHER INTERFERON LAMBDA-1 UniProtKB/TrEMBL
  PTHR31943 UniProtKB/TrEMBL
Pfam IL28A UniProtKB/TrEMBL
UniProt A0A287A6Q8_PIG UniProtKB/TrEMBL
  A0A4X1UJQ3_PIG UniProtKB/TrEMBL
  A0A8D0V939_PIG UniProtKB/TrEMBL
  A0A8D1EA15_PIG UniProtKB/TrEMBL
  A0A8D1NXY1_PIG UniProtKB/TrEMBL
  B8XX89 ENTREZGENE, UniProtKB/TrEMBL
  R9W8G9 ENTREZGENE