CXCL9 (C-X-C motif chemokine ligand 9) - Rat Genome Database

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Gene: CXCL9 (C-X-C motif chemokine ligand 9) Sus scrofa
Analyze
Symbol: CXCL9
Name: C-X-C motif chemokine ligand 9
RGD ID: 14146900
Description: ENCODES a protein that exhibits chemokine activity (inferred); CXCR3 chemokine receptor binding (inferred); cytokine activity (inferred); INVOLVED IN defense response to virus (ortholog); positive regulation of myoblast differentiation (ortholog); positive regulation of myoblast fusion (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); alopecia areata (ortholog); asthma (ortholog); FOUND IN external side of plasma membrane (inferred); extracellular region (inferred); extracellular space (inferred); INTERACTS WITH ammonia; cadmium atom; cadmium dichloride
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-X-C motif chemokine 9; chemokine (C-X-C motif) ligand 9; MIG
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,663,501 - 71,670,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,665,541 - 71,670,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,801,515 - 75,806,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:21497916   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXCL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,663,501 - 71,670,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,665,541 - 71,670,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,801,515 - 75,806,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,001,275 - 76,007,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,001,275 - 76,007,509 (-)EnsemblGRCh38hg38GRCh38
GRCh37476,922,428 - 76,928,662 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,141,647 - 77,147,665 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,279,801 - 77,285,820NCBI
Celera474,223,036 - 74,229,163 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,674,915 - 72,680,933 (-)NCBIHuRef
CHM1_1476,899,188 - 76,905,206 (-)NCBICHM1_1
T2T-CHM13v2.0479,341,778 - 79,348,012 (-)NCBIT2T-CHM13v2.0
Cxcl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,469,190 - 92,475,938 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,469,206 - 92,475,938 (-)EnsemblGRCm39 Ensembl
GRCm38592,321,331 - 92,328,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,321,347 - 92,328,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,750,357 - 92,757,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,398,190 - 93,403,317 (-)NCBIMGSCv36mm8
Celera590,465,046 - 90,472,120 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.51NCBI
Cxcl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81416,007,166 - 16,012,077 (+)NCBIGRCr8
mRatBN7.21415,722,868 - 15,727,779 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,722,908 - 15,728,435 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,731,069 - 15,735,970 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,049,915 - 17,054,816 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01415,745,354 - 15,750,255 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,228,832 - 17,233,743 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,228,856 - 17,234,712 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,144,966 - 17,150,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,284,085 - 17,288,996 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,284,135 - 17,289,652 (+)NCBI
Celera1415,117,313 - 15,122,212 (+)NCBICelera
Cytogenetic Map14p22NCBI
Cxcl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433724,515 - 732,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433724,566 - 731,945 (-)NCBIChiLan1.0ChiLan1.0
CXCL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2354,065,785 - 54,071,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,255,545 - 54,261,580 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,198,478 - 48,204,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1454,036,343 - 54,042,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,036,342 - 54,042,502 (+)Ensemblpanpan1.1panPan2
Cxcl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,466,180 - 11,472,856 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493667632,128 - 40,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493667633,580 - 40,323 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,507,121 - 24,513,830 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,507,130 - 24,513,121 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,849,313 - 2,855,487 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,995,716 - 15,011,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475714,995,649 - 15,009,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CXCL9
117 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000058978   ⟹   ENSSSCP00000046312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl871,663,501 - 71,670,271 (-)Ensembl
RefSeq Acc Id: NM_001114289   ⟹   NP_001107761
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1871,665,541 - 71,670,236 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001107761   ⟸   NM_001114289
- Peptide Label: precursor
- UniProtKB: B0FYK2 (UniProtKB/TrEMBL),   A0A4X1SX95 (UniProtKB/TrEMBL),   A0A8D2A8Z1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000046312   ⟸   ENSSSCT00000058978
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032777 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015040570 UniProtKB/TrEMBL
  ENSSSCG00025020320 UniProtKB/TrEMBL
  ENSSSCG00030008191 UniProtKB/TrEMBL
  ENSSSCG00035077980 UniProtKB/TrEMBL
  ENSSSCG00040071447 UniProtKB/TrEMBL
  ENSSSCG00045012537 UniProtKB/TrEMBL
  ENSSSCG00050009726 UniProtKB/TrEMBL
  ENSSSCG00055007673 UniProtKB/TrEMBL
  ENSSSCG00060012083 UniProtKB/TrEMBL
  ENSSSCG00065076915 UniProtKB/TrEMBL
  ENSSSCG00070005029 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058978 ENTREZGENE
  ENSSSCT00000058978.3 UniProtKB/TrEMBL
  ENSSSCT00015054222.1 UniProtKB/TrEMBL
  ENSSSCT00025027604.1 UniProtKB/TrEMBL
  ENSSSCT00030011110.1 UniProtKB/TrEMBL
  ENSSSCT00035106366.1 UniProtKB/TrEMBL
  ENSSSCT00040098240.1 UniProtKB/TrEMBL
  ENSSSCT00040098287.1 UniProtKB/TrEMBL
  ENSSSCT00045021317.1 UniProtKB/TrEMBL
  ENSSSCT00050013096.1 UniProtKB/TrEMBL
  ENSSSCT00055014992.1 UniProtKB/TrEMBL
  ENSSSCT00060015803.1 UniProtKB/TrEMBL
  ENSSSCT00065106326.1 UniProtKB/TrEMBL
  ENSSSCT00070009528.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CXC UniProtKB/TrEMBL
  Chemokine_CXC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  CXC_Chemokine_domain UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report ssc:100135681 UniProtKB/TrEMBL
NCBI Gene CXCL9 ENTREZGENE
PANTHER C-X-C MOTIF CHEMOKINE 9 UniProtKB/TrEMBL
  SMALL INDUCIBLE CYTOKINE A UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PRINTS INTERLEUKIN8 UniProtKB/TrEMBL
  SMALLCYTKCXC UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CXC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A4X1SX95 ENTREZGENE
  A0A8D1KL97_PIG UniProtKB/TrEMBL
  A0A8D2A8Z1 ENTREZGENE, UniProtKB/TrEMBL
  B0FYK2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SX95 UniProtKB/TrEMBL
VGNC ID VGNC:87107 ENTREZGENE