Symbol:
CXCL9
Name:
C-X-C motif chemokine ligand 9
RGD ID:
14146900
Description:
ENCODES a protein that exhibits chemokine activity (inferred); CXCR3 chemokine receptor binding (inferred); cytokine activity (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); alopecia areata (ortholog); asthma (ortholog); FOUND IN external side of plasma membrane (inferred); extracellular region (inferred); extracellular space (inferred); INTERACTS WITH ammonia; cadmium atom; cadmium dichloride
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
C-X-C motif chemokine 9; chemokine (C-X-C motif) ligand 9; MIG
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 8 71,663,501 - 71,670,271 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 8 71,665,541 - 71,670,236 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 8 75,801,515 - 75,806,212 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - PID (archival)
CXCL9 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 8 71,663,501 - 71,670,271 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 8 71,665,541 - 71,670,236 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 8 75,801,515 - 75,806,212 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CXCL9 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 4 76,001,275 - 76,007,509 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 4 76,001,275 - 76,007,509 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 4 76,922,428 - 76,928,662 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 4 77,141,647 - 77,147,665 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 4 77,279,801 - 77,285,820 NCBI Celera 4 74,223,036 - 74,229,163 (-) NCBI Celera Cytogenetic Map 4 q21.1 NCBI HuRef 4 72,674,915 - 72,680,933 (-) NCBI HuRef CHM1_1 4 76,899,188 - 76,905,206 (-) NCBI CHM1_1 T2T-CHM13v2.0 4 79,341,778 - 79,348,012 (-) NCBI T2T-CHM13v2.0
Cxcl9 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 92,469,190 - 92,475,938 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 92,469,206 - 92,475,938 (-) Ensembl GRCm39 Ensembl GRCm38 5 92,321,331 - 92,328,079 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 92,321,347 - 92,328,079 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 92,750,357 - 92,757,105 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 93,398,190 - 93,403,317 (-) NCBI MGSCv36 mm8 Celera 5 90,465,046 - 90,472,120 (-) NCBI Celera Cytogenetic Map 5 E2 NCBI cM Map 5 46.51 NCBI
Cxcl9 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 14 16,007,166 - 16,012,077 (+) NCBI GRCr8 mRatBN7.2 14 15,722,868 - 15,727,779 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 14 15,722,908 - 15,728,435 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 14 15,731,069 - 15,735,970 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 14 17,049,915 - 17,054,816 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 14 15,745,354 - 15,750,255 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 14 17,228,832 - 17,233,743 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 14 17,228,856 - 17,234,712 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 14 17,144,966 - 17,150,220 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 14 17,284,085 - 17,288,996 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 14 17,284,135 - 17,289,652 (+) NCBI Celera 14 15,117,313 - 15,122,212 (+) NCBI Celera Cytogenetic Map 14 p22 NCBI
Cxcl9 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955433 724,515 - 732,192 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955433 724,566 - 731,945 (-) NCBI ChiLan1.0 ChiLan1.0
CXCL9 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 3 54,065,785 - 54,071,820 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 4 54,255,545 - 54,261,580 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 4 48,198,478 - 48,204,658 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 4 54,036,343 - 54,042,502 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 4 54,036,342 - 54,042,502 (+) Ensembl panpan1.1 panPan2
Cxcl9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
CXCL9 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 7 24,507,121 - 24,513,830 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 7 24,507,130 - 24,513,121 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 2,849,313 - 2,855,487 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Cxcl9 (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
10
4
23
3
2
5
14
12
23
3
6
3
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSSSCT00000058978 ⟹ ENSSSCP00000046312
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 8 71,663,501 - 71,670,271 (-) Ensembl
RefSeq Acc Id:
NM_001114289 ⟹ NP_001107761
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 8 71,665,541 - 71,670,236 (-) NCBI
Sequence:
GACTCAGTGGAACACCTACAGAAGTGACACTGTTCTACCACTATGAAGAAAAGCAGTGTTGCCTTGCTTTTGGGTATCATCTTCCTGACTCTGATTGGAGTTCAAGGAACCCTACTAATGAGGAATGG ACGTTGTTCCTGCATCAACACCAGCCAAAGGATGATCCATTTAAAATCCTTAAGGGATCTTAAACAATTCGCCCCAAGCCCTTCTTGTGAGAAAATGGAAGTCATTGCTACAATGAAGAATGGGGATC AAACATGTCTAAACCCAGATTCACCAGATGTGAAAAAATTGATTAAAGAGTGGGAGAAACAGGTCAGCCTAAAGAAAAAGCAAAAGAAAGGGAAAAAACATCCAAAAACCAAGAAAGTTCGAAAAGTT AAAAAATCTCAACGTCCTGATCAAAAGAAGATGACATGAGGGACCATGTTACCAACAAGTATTCTG
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RefSeq Acc Id:
NP_001107761 ⟸ NM_001114289
- Peptide Label:
precursor
- UniProtKB:
B0FYK2 (UniProtKB/TrEMBL), A0A4X1SX95 (UniProtKB/TrEMBL), A0A8D2A8Z1 (UniProtKB/TrEMBL)
- Sequence:
MKKSSVALLLGIIFLTLIGVQGTLLMRNGRCSCINTSQRMIHLKSLRDLKQFAPSPSCEKMEVIATMKNGDQTCLNPDSPDVKKLIKEWEKQVSLKKKQKKGKKHPKTKKVRKVKKSQRPDQKKMT
hide sequence
Ensembl Acc Id:
ENSSSCP00000046312 ⟸ ENSSSCT00000058978