Cxcl9 (chemokine (C-X-C motif) ligand 9) - Rat Genome Database
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Gene: Cxcl9 (chemokine (C-X-C motif) ligand 9) Mus musculus
Analyze
Symbol: Cxcl9
Name: chemokine (C-X-C motif) ligand 9
RGD ID: 1332044
Description: Predicted to have CXCR chemokine receptor binding activity and chemokine activity. Involved in defense response to virus; positive regulation of cell differentiation; and response to bacterium. Localizes to external side of plasma membrane and extracellular space. Is expressed in central nervous system and retina. Orthologous to human CXCL9 (C-X-C motif chemokine ligand 9); PARTICIPATES IN interleukin-23 signaling pathway; Toll-like receptor signaling pathway; INTERACTS WITH (+)-alpha-viniferin; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BB139920; C-X-C motif chemokine 9; CMK; crg-1; crg-10; gamma interferon-induced monokine; gamma-interferon-induced monokine; M119; Mi; Mig; monokine induced by gamma interferon; monokine induced by interferon-gamma; MuMIG; Scyb; Scyb9; small inducible cytokine B subfamily (Cys-X-Cys), member 9; small-inducible cytokine B9
Orthologs:
Homo sapiens (human) : CXCL9 (C-X-C motif chemokine ligand 9)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Cxcl9 (C-X-C motif chemokine ligand 9)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cxcl9 (C-X-C motif chemokine ligand 9)
Pan paniscus (bonobo/pygmy chimpanzee) : CXCL9 (C-X-C motif chemokine ligand 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cxcl9 (C-X-C motif chemokine ligand 9)
Sus scrofa (pig) : CXCL9 (C-X-C motif chemokine ligand 9)
Chlorocebus sabaeus (African green monkey) : CXCL9 (C-X-C motif chemokine ligand 9)
Heterocephalus glaber (naked mole-rat) : Cxcl9 (C-X-C motif chemokine ligand 9)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,469,190 - 92,475,938 (-)NCBI
GRCm38592,321,331 - 92,328,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,321,347 - 92,328,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,750,357 - 92,757,105 (-)NCBIGRCm37mm9NCBIm37
MGSCv36593,398,190 - 93,403,317 (-)NCBImm8
Celera590,465,046 - 90,472,120 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-viniferin  (EXP)
(-)-demecolcine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1,3-dinitrobenzene  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4,6-trinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP,ISO)
4-hydroperoxycyclophosphamide  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-nitroquinoline N-oxide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
astemizole  (ISO)
barium sulfate  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
beta-carotene  (ISO)
bisphenol A  (ISO)
bleomycin A2  (EXP)
buta-1,3-diene  (EXP)
cadmium dichloride  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (EXP,ISO)
ceric oxide  (ISO)
chloroquine  (EXP)
cholesterol  (EXP)
choline  (EXP)
chondroitin sulfate  (ISO)
cobalt atom  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
crocidolite asbestos  (EXP)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dopamine  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
fragrance  (ISO)
gadodiamide hydrate  (ISO)
Genipin  (EXP)
glafenine  (ISO)
Imipenem-cilastatin  (EXP)
indole-3-methanol  (ISO)
isoprenaline  (EXP)
L-ascorbic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
luteolin  (EXP)
metam  (EXP)
metformin  (ISO)
methapyrilene  (ISO)
monosodium L-glutamate  (EXP)
mycotoxin  (EXP)
N-nitrosodimethylamine  (EXP,ISO)
neomycin  (EXP)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nimesulide  (EXP)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP)
pevonedistat  (ISO)
phenobarbital  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
poly(I:C)  (EXP)
potassium dichromate  (EXP)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
roxarsone  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium atom  (ISO)
sterigmatocystin  (EXP)
sulindac  (EXP)
tamibarotene  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
tofacitinib  (EXP,ISO)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
tremolite asbestos  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vincristine  (ISO)
zaragozic acid A  (EXP,ISO)
zearalenone  (ISO)
zinc atom  (EXP)
zinc oxide  (EXP)
zinc(0)  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Agostini C, etal., Respir Res. 2005 Feb 22;6:20.
2. Al Alam D, etal., Am J Respir Cell Mol Biol. 2010 Jun;42(6):644-50. Epub 2009 Jul 13.
3. Belperio JA, etal., J Immunol. 2002 Jul 15;169(2):1037-49.
4. Blanco-Melo D, etal., Cell. 2020 May 28;181(5):1036-1045.e9. doi: 10.1016/j.cell.2020.04.026. Epub 2020 May 15.
5. Bonville CA, etal., Virology. 2007 Nov 10;368(1):182-90. Epub 2007 Jul 25.
6. Brozyna S, etal., COPD. 2009 Feb;6(1):4-16.
7. Chavez-Bueno S, etal., Virol J. 2005 May 25;2:46.
8. Chen J, etal., J Virol. 2010 Feb;84(3):1289-301. Epub 2009 Nov 11.
9. Chien JY, etal., Respirology. 2006 Nov;11(6):715-22.
10. Costa C, etal., Chest. 2008 Jan;133(1):26-33. Epub 2007 Oct 9.
11. Crawford MA, etal., PLoS Pathog. 2010 Nov 18;6(11):e1001199.
12. Cui A, etal., Respiration. 2010;80(5):372-8. Epub 2009 Oct 6.
13. El Feghaly RE, etal., Pediatr Infect Dis J. 2010 Apr;29(4):e26-31.
14. Eliasson M, etal., Microbes Infect. 2010 Jul;12(7):565-73. Epub 2010 Apr 8.
15. Feferman T, etal., J Immunol. 2005 May 1;174(9):5324-31.
16. Fine JS, etal., Inflammation. 2003 Aug;27(4):161-74.
17. Fraser DD, etal., Crit Care Explor. 2020 Jun 22;2(6):e0144. doi: 10.1097/CCE.0000000000000144. eCollection 2020 Jun.
18. Glass WG, etal., J Immunol. 2004 Sep 15;173(6):4030-9. doi: 10.4049/jimmunol.173.6.4030.
19. Grumelli S, etal., PLoS Med. 2004 Oct;1(1):e8. Epub 2004 Oct 19.
20. Hasan Z, etal., Scand J Immunol. 2009 Mar;69(3):259-67.
21. Hasegawa M, etal., Clin Rheumatol. 2011 Feb;30(2):231-7. Epub 2010 Nov 4.
22. Hildebrandt GC, etal., J Immunol. 2004 Aug 1;173(3):2050-9.
23. Huang KJ, etal., J Med Virol. 2005 Feb;75(2):185-94. doi: 10.1002/jmv.20255.
24. Iwata-Yoshikawa N, etal., J Virol. 2019 Mar 5;93(6). pii: JVI.01818-18. doi: 10.1128/JVI.01818-18. Print 2019 Mar 15.
25. Katoh S, etal., Int Arch Allergy Immunol. 2005 Jul;137(3):229-35. Epub 2005 Jun 13.
26. Kelsen SG, etal., Am J Respir Crit Care Med. 2009 May 1;179(9):799-805. Epub 2009 Feb 12.
27. Kishi J, etal., Eur Respir J. 2011 Aug;38(2):415-24. Epub 2011 Jan 27.
28. Landi A, etal., Cytokine. 2016 Feb;78:27-36. doi: 10.1016/j.cyto.2015.11.018. Epub 2015 Nov 28.
29. Medoff BD, etal., J Immunol. 2006 Jun 1;176(11):7087-95.
30. MGD and Homologene mouse data transfer
31. MGD data from the GO Consortium
32. Nance S, etal., Eur J Immunol. 2004 Mar;34(3):677-85.
33. Ng PC, etal., Arch Dis Child. 2005 Apr;90(4):422-3. doi: 10.1136/adc.2004.053660.
34. Nishioka Y, etal., Clin Exp Immunol. 2007 Aug;149(2):317-26. Epub 2007 Jun 5.
35. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
36. Pipeline to import KEGG annotations from KEGG into RGD
37. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
38. Rabquer BJ, etal., Arthritis Res Ther. 2011 Feb 8;13(1):R18.
39. RGD automated import pipeline
40. RGD automated import pipeline for gene-chemical interactions
41. Richards TJ, etal., Arthritis Rheum. 2009 Jul;60(7):2183-92.
42. Tang NL, etal., Clin Chem. 2005 Dec;51(12):2333-40. doi: 10.1373/clinchem.2005.054460. Epub 2005 Sep 29.
43. Tang PC, etal., FASEB J. 2005 Sep;19(11):1528-30. Epub 2005 Jul 12.
44. Thomas MS, etal., J Immunol. 2004 Jul 1;173(1):615-23.
45. Valbuena G, etal., Am J Pathol. 2003 Oct;163(4):1357-69.
46. Wallace KL, etal., Blood. 2009 Jul 16;114(3):667-76. Epub 2009 May 11.
47. Wang CH, etal., Respir Res. 2005 May 11;6:42. doi: 10.1186/1465-9921-6-42.
48. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
49. Widney DP, etal., Infect Immun. 2005 Jan;73(1):485-93.
50. Yang Y, etal., J Allergy Clin Immunol. 2020 Apr 29. pii: S0091-6749(20)30576-5. doi: 10.1016/j.jaci.2020.04.027.
Additional References at PubMed
PMID:2115167   PMID:9730606   PMID:9857043   PMID:9935167   PMID:10349636   PMID:10393857   PMID:10714680   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11731434   PMID:12080938  
PMID:12098066   PMID:12126650   PMID:12133969   PMID:12226082   PMID:12368204   PMID:12403783   PMID:12415259   PMID:12477932   PMID:12740040   PMID:14769916   PMID:15187119   PMID:15489334  
PMID:15585657   PMID:15629884   PMID:15708587   PMID:15959530   PMID:16095489   PMID:16141072   PMID:16141073   PMID:16299319   PMID:16365450   PMID:16368965   PMID:16585592   PMID:16602821  
PMID:16768726   PMID:17277133   PMID:17277142   PMID:17296171   PMID:17525185   PMID:17889309   PMID:17902170   PMID:18178850   PMID:18250476   PMID:18287559   PMID:18347328   PMID:18566419  
PMID:18697212   PMID:18716926   PMID:18973912   PMID:19008373   PMID:19017990   PMID:19179419   PMID:19200397   PMID:19344719   PMID:19389928   PMID:19454692   PMID:19487472   PMID:19839009  
PMID:20194716   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22237831   PMID:22277947   PMID:22358057   PMID:22474250   PMID:22679098   PMID:22905138   PMID:22972626   PMID:22980984  
PMID:23012479   PMID:23123063   PMID:23241877   PMID:23352234   PMID:23447686   PMID:23844157   PMID:23875831   PMID:24523323   PMID:24700550   PMID:25207638   PMID:25432064   PMID:25495686  
PMID:25595646   PMID:25643352   PMID:25672751   PMID:25713416   PMID:26052942   PMID:26892362   PMID:27022143   PMID:27189410   PMID:27626380   PMID:27686391   PMID:27760760   PMID:27960090  
PMID:27966526   PMID:28282568   PMID:28432083   PMID:28849106   PMID:28891812   PMID:29088306   PMID:29277541   PMID:29712506   PMID:29901197   PMID:29969845   PMID:30619292   PMID:30779709  
PMID:31186412   PMID:31712428  


Genomics

Comparative Map Data
Cxcl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,469,190 - 92,475,938 (-)NCBI
GRCm38592,321,331 - 92,328,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,321,347 - 92,328,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,750,357 - 92,757,105 (-)NCBIGRCm37mm9NCBIm37
MGSCv36593,398,190 - 93,403,317 (-)NCBImm8
Celera590,465,046 - 90,472,120 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.51NCBI
CXCL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl476,001,275 - 76,007,509 (-)EnsemblGRCh38hg38GRCh38
GRCh38476,001,275 - 76,007,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37476,922,623 - 76,928,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,141,647 - 77,147,665 (-)NCBINCBI36hg18NCBI36
Build 34477,279,801 - 77,285,820NCBI
Celera474,223,036 - 74,229,163 (-)NCBI
Cytogenetic Map4q21.1NCBI
HuRef472,674,915 - 72,680,933 (-)NCBIHuRef
CHM1_1476,899,060 - 76,905,241 (-)NCBICHM1_1
Cxcl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01417,228,832 - 17,233,743 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,228,856 - 17,234,712 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,144,966 - 17,150,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,284,085 - 17,288,996 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11417,284,135 - 17,289,652 (+)NCBI
Celera1415,117,313 - 15,122,212 (+)NCBICelera
Cytogenetic Map14p22NCBI
Cxcl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433724,515 - 732,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433724,566 - 731,945 (-)NCBIChiLan1.0ChiLan1.0
CXCL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1454,036,343 - 54,042,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,036,342 - 54,042,502 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0448,198,478 - 48,204,658 (+)NCBIMhudiblu_PPA_v0panPan3
Cxcl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493667633,580 - 40,323 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,663,495 - 71,670,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,665,541 - 71,670,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,801,515 - 75,806,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,507,121 - 24,513,830 (-)NCBI
Cxcl9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475714,995,649 - 15,009,771 (+)NCBI

Position Markers
BB139920  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38592,321,498 - 92,321,644UniSTSGRCm38
MGSCv37592,750,524 - 92,750,670UniSTSGRCm37
Celera590,465,213 - 90,465,359UniSTS
Cytogenetic Map5E2UniSTS
cM Map553.0UniSTS
Whitehead/MRC_RH51121.84UniSTS
Cxcl9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5E2UniSTS
cM Map553.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552537120107173175Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552537120107173175Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555230992100307666Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55230992108614761Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55945495493455133Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55945495493455133Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55945495493455133Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55945495493455133Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56009823494098356Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56025521594255313Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6250272196502841Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56250272196502841Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56250272196502841Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56250272196502841Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563548099104239199Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56422703098227149Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566381814100381814Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566381814100381814Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572271017106271152Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57515468797871944Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575154687119880564Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576042404110042620Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576132927110133058Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576132927110133058Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576132927110133058Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576297205110297366Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576297205110297366Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576297205110297366Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576297205110297366Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57702797697510356Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57702797697510356Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579391781113391927Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580701400114701400Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined580871790114871944Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582690609116690738Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582690609116690738Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587239005121239199Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587239005121239199Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587239005121239199Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587239005121239199Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587239005121239199Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589271017118725963Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589271017124100176Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590173096124173175Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590413140124413285Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590413140124413285Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:774
Count of miRNA genes:482
Interacting mature miRNAs:563
Transcripts:ENSMUST00000113093
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000113093   ⟹   ENSMUSP00000108716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl592,321,347 - 92,328,079 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl592,326,623 - 92,328,078 (-)Ensembl
RefSeq Acc Id: NM_008599   ⟹   NP_032625
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39592,469,190 - 92,475,938 (-)NCBI
GRCm38592,321,331 - 92,328,079 (-)ENTREZGENE
MGSCv37592,750,357 - 92,757,105 (-)RGD
Celera590,465,046 - 90,472,120 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032625   ⟸   NM_008599
- Peptide Label: precursor
- UniProtKB: P18340 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000108716   ⟸   ENSMUST00000113093
Protein Domains
SCY

Promoters
RGD ID:6887172
Promoter ID:EPDNEW_M7037
Type:multiple initiation site
Name:Cxcl9_1
Description:Mus musculus chemokine (C-X-C motif) ligand 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38592,328,079 - 92,328,139EPDNEW
RGD ID:6837318
Promoter ID:MM_KWN:42889
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000031365,   NM_008599
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36592,756,704 - 92,757,204 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352449 AgrOrtholog
Ensembl Genes ENSMUSG00000029417 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000108716 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000113093 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Chemokine_CXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_CXC_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CXC_Chemokine_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17329 UniProtKB/Swiss-Prot
MGD MGI:1352449 ENTREZGENE
NCBI Gene 17329 ENTREZGENE
PANTHER PTHR10179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IL8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cxcl9 PhenoGen
PRINTS SMALLCYTKCXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.766 ENTREZGENE
UniProt CXCL9_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U089_MOUSE UniProtKB/TrEMBL
  Q8C9B8_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8C9J0 UniProtKB/Swiss-Prot
  Q99J60 UniProtKB/Swiss-Prot