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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of phagocytosis
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Accession:GO:0050764 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.
Synonyms:never_in_taxon: NCBITaxon:147537 ! Saccharomycotina

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regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcgr2a Fc fragment of IgG receptor IIa ISO RGD PMID:16482158 PMID:22184119 RGD:11041001 RGD:2293335 NCBI chrNW_004937131:15,542...22,099 JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:11,897,998...11,919,153
Ensembl chrNW_004936474:11,896,914...11,919,190 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:18,996,016...19,017,908
Ensembl chrNW_004936485:18,978,412...19,017,908 		JBrowse link
G Itgav integrin subunit alpha V involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:10,750,116...10,839,018
Ensembl chrNW_004936506:10,750,101...10,839,303 		JBrowse link
G Letmd1 LETM1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:8,684,597...8,694,074
Ensembl chrNW_004936512:8,684,587...8,694,074 		JBrowse link
G Prkcg protein kinase C gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15006698) Ensembl
MGI		 PMID:15006698 GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258 		JBrowse link
G Scarb1 scavenger receptor class B member 1 ISO RGD PMID:12016218 RGD:1304245 NCBI chrNW_004936558:530,828...555,098
Ensembl chrNW_004936558:530,828...552,892 		JBrowse link
G Sphk1 sphingosine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,482,830...1,489,337
Ensembl chrNW_004936594:1,486,111...1,489,188 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISO (MGI:3690533|PMID:16982801) UniProt PMID:16982801 MGI:3690533 NCBI chrNW_004936581:1,516,199...1,557,992
Ensembl chrNW_004936581:1,512,855...1,559,679 		JBrowse link
negative regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:20826760) BHF-UCL PMID:20826760 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:7,580,495...7,647,471
Ensembl chrNW_004936473:7,579,780...7,611,923 		JBrowse link
negative regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,168,599...3,179,369
Ensembl chrNW_004936578:3,168,331...3,171,928 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24035364) Ensembl
MGI		 PMID:24035364 GO_REF:0000107 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24035364) Ensembl
MGI		 PMID:24035364 GO_REF:0000107 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:24035364) MGI PMID:24035364 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Cnn2 calponin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18617524) Ensembl
MGI		 PMID:18617524 GO_REF:0000107 NCBI chrNW_004936588:453,908...459,916
Ensembl chrNW_004936588:453,876...460,015 		JBrowse link
G Csk C-terminal Src kinase ISO RGD PMID:10884975 RGD:5134370 NCBI chrNW_004936471:33,757,778...33,777,871
Ensembl chrNW_004936471:33,757,772...33,778,933 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18276788) MGI
Ensembl		 PMID:18276788 GO_REF:0000107 NCBI chrNW_004936491:15,412,606...15,618,519
Ensembl chrNW_004936491:15,413,206...15,618,519 		JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO (PMID:12385742) MGI PMID:12385742 NCBI chrNW_004937131:80,014...96,114 JBrowse link
G LOC101967799 leukocyte surface antigen CD47 involved_in ISO PMID:21401967 ARUK-UCL PMID:21401967 RGD:13792533 NCBI chrNW_004936645:1,363,406...1,408,624 JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:4,621,222...4,669,808
Ensembl chrNW_004936544:4,618,660...4,670,140 		JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO (PMID:26745724) UniProt PMID:26745724 NCBI chrNW_004936519:8,759,702...8,790,823 JBrowse link
G Pten phosphatase and tensin homolog ISO RGD PMID:18056380 RGD:2292524 NCBI chrNW_004936735:1,252,414...1,338,318
Ensembl chrNW_004936735:1,252,414...1,338,323 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936826:748,256...753,460
Ensembl chrNW_004936826:747,291...753,442 		JBrowse link
G Sftpd surfactant protein D ISO RGD PMID:12654779 RGD:4144053 NCBI chrNW_004936716:60,754...73,010
Ensembl chrNW_004936716:60,656...73,099 		JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:22630829) AgBase PMID:22630829 NCBI chrNW_004936485:14,979,838...14,999,047
Ensembl chrNW_004936485:14,979,819...14,998,004 		JBrowse link
G Sirpa signal regulatory protein alpha involved_in ISO PMID:21401967
(MGI:6201881|PMID:21401967)		 ARUK-UCL PMID:21401967 MGI:6201881 RGD:13792533 NCBI chrNW_004936485:16,608,317...16,654,552 JBrowse link
G Snx3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,472,171...4,520,732
Ensembl chrNW_004936564:4,471,652...4,520,785 		JBrowse link
G Syt11 synaptotagmin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,123,196...5,142,976
Ensembl chrNW_004936580:5,129,865...5,142,885 		JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:16272332 RGD:1579756 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272 		JBrowse link
G Tlr2 toll like receptor 2 involved_in ISO (MGI:5307186|PMID:22198949) ARUK-UCL PMID:22198949 MGI:5307186 NCBI chrNW_004936576:522,234...531,660
Ensembl chrNW_004936576:527,434...529,788 		JBrowse link
positive regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2 complement C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,602,400...1,615,974
Ensembl chrNW_004936727:1,602,398...1,616,060 		JBrowse link
G C3 complement C3 involved_in ISO (PMID:19302245) BHF-UCL PMID:19302245 NCBI chrNW_004936588:3,985,732...4,023,221 JBrowse link
G LOC101975827 complement C4-A involved_in ISO (PMID:19302245) BHF-UCL PMID:19302245 NCBI chrNW_004936727:1,556,204...1,570,084 JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISO (MGI:3662940|PMID:16908670) Alzheimers_University_of_Toronto PMID:16908670 MGI:3662940 NCBI chrNW_004936588:460,308...477,382
Ensembl chrNW_004936588:461,389...477,229 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406
Ensembl chrNW_004936476:18,659,815...18,663,940 		JBrowse link
positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:9,477,483...9,526,692
Ensembl chrNW_004936492:9,477,373...9,526,692 		JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colec10 collectin subfamily member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:27,416,471...27,449,206
Ensembl chrNW_004936470:27,416,494...27,449,206 		JBrowse link
G Colec11 collectin subfamily member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:1,757,288...1,776,053
Ensembl chrNW_004936532:1,749,894...1,776,001 		JBrowse link
G Fcn3 ficolin 3 involved_in ISO (PMID:11907111) ComplexPortal PMID:11907111 NCBI chrNW_004936474:11,680,166...11,685,214 JBrowse link
G LOC101965964 ficolin-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:2,421,092...2,428,240
Ensembl chrNW_004936669:2,421,087...2,431,714 		JBrowse link
G Myo18a myosin XVIIIA involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:5,257,165...5,351,757
Ensembl chrNW_004936538:5,258,401...5,344,669 		JBrowse link
G Pla2g5 phospholipase A2 group V involved_in ISO (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chrNW_004936474:6,131,915...6,150,810
Ensembl chrNW_004936474:6,131,884...6,150,819 		JBrowse link
positive regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISO (MGI:5553241|PMID:20495215), (MGI:6271506|PMID:27472885) UniProt PMID:20495215 PMID:27472885 MGI:5553241 MGI:6271506 NCBI chrNW_004936588:460,308...477,382
Ensembl chrNW_004936588:461,389...477,229 		JBrowse link
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO (PMID:17116687) MGI PMID:17116687 NCBI chrNW_004936538:6,674,595...6,819,511
Ensembl chrNW_004936538:6,674,907...6,816,674 		JBrowse link
G Ahsg alpha 2-HS glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:3,332,934...3,339,903
Ensembl chrNW_004936578:3,332,934...3,339,903 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,111,055...2,112,626
Ensembl chrNW_004936542:2,111,052...2,112,854 		JBrowse link
G Apoa2 apolipoprotein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:520,420...521,726
Ensembl chrNW_004936903:520,650...521,910 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17116687) Ensembl
MGI		 PMID:17116687 GO_REF:0000107 NCBI chrNW_004936619:288,377...432,297
Ensembl chrNW_004936619:288,340...432,315 		JBrowse link
G Btk Bruton tyrosine kinase ISO RGD PMID:28352114 RGD:151665126 NCBI chrNW_004936813:429,400...467,481
Ensembl chrNW_004936813:429,224...463,441 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:11901193) MGI PMID:11901193 NCBI chrNW_004936588:3,985,732...4,023,221 JBrowse link
G Calr calreticulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,994,695...1,999,070
Ensembl chrNW_004936659:1,994,648...1,999,430 		JBrowse link
G Camk1d calcium/calmodulin dependent protein kinase ID involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:2,626,909...2,768,304
Ensembl chrNW_004936484:2,632,107...3,023,869 		JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:23238794 RGD:8696010 NCBI chrNW_004936810:791,823...838,303
Ensembl chrNW_004936810:758,182...838,365 		JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14707091) TreeGrafter
MGI		 PMID:14707091 GO_REF:0000118 NCBI chrNW_004936902:436,224...446,435 JBrowse link
G Dnm2 dynamin 2 ISO RGD PMID:12802072 RGD:9685290 NCBI chrNW_004936659:957,408...1,046,393
Ensembl chrNW_004936659:957,392...1,049,188 		JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936609:4,695,202...5,099,038
Ensembl chrNW_004936609:4,695,628...5,099,038 		JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11237803), (PMID:11911823)
(PMID:11901193)		 TreeGrafter
MGI		 PMID:11237803 PMID:11901193 PMID:11911823 GO_REF:0000118 NCBI chrNW_004936903:514,278...517,975
Ensembl chrNW_004936903:514,761...517,948 		JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11911823), (PMID:9551950)
(PMID:11911824)		 Ensembl
MGI		 PMID:9551950 PMID:11911823 PMID:11911824 GO_REF:0000107 NCBI chrNW_004936580:115,552...144,970
Ensembl chrNW_004936580:115,450...145,785 		JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb acts_upstream_of_or_within ISO (PMID:8769481) MGI PMID:8769481 NCBI chrNW_004937131:80,014...96,114 JBrowse link
G Gas6 growth arrest specific 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:27,116...57,158
Ensembl chrNW_004936472:32,123...54,028 		JBrowse link
G Gata2 GATA binding protein 2 involved_in ISO PMID:12933836 UniProt PMID:12933836 RGD:632788 NCBI chrNW_004936798:406,258...414,785
Ensembl chrNW_004936798:406,258...414,931 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:9886410 RGD:10059405 NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923 		JBrowse link
G Ifng interferon gamma involved_in ISO (MGI:4454469|PMID:20368278) ARUK-UCL PMID:20368278 MGI:4454469 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452 		JBrowse link
G Il15 interleukin 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:6,344,348...6,358,803
Ensembl chrNW_004936535:6,344,395...6,350,197 		JBrowse link
G Il15ra interleukin 15 receptor subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:8,590,945...8,623,478
Ensembl chrNW_004936484:8,590,482...8,623,469 		JBrowse link
G Il2rb interleukin 2 receptor subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:3,795,940...3,805,822
Ensembl chrNW_004936492:3,795,940...3,805,774 		JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:487,414...491,028
Ensembl chrNW_004936762:487,380...491,044 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:25453580) AgBase PMID:25453580 NCBI chrNW_004936778:1,286,475...1,311,184
Ensembl chrNW_004936778:1,286,341...1,311,194 		JBrowse link
G Lman2 lectin, mannose binding 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,619,380...1,638,469
Ensembl chrNW_004936597:1,616,297...1,638,569 		JBrowse link
G LOC101967032 cytochrome b-245 light chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:1,036,967...1,044,954
Ensembl chrNW_004936641:1,036,967...1,044,991 		JBrowse link
G LOC101967799 leukocyte surface antigen CD47 acts_upstream_of_or_within ISO (PMID:14634079) RGD
MGI		 PMID:14634079 PMID:23238794 RGD:8696010 NCBI chrNW_004936645:1,363,406...1,408,624 JBrowse link
G LOC101971779 N-formyl peptide receptor 2-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937026:169,334...170,717
Ensembl chrNW_004937026:167,935...170,389 		JBrowse link
G LOC101972741 signal-regulatory protein beta-1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:16,788,926...16,807,352 JBrowse link
G LOC101977501 mannose-binding protein A-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936716:89,232...91,728 JBrowse link
G Lrp1 LDL receptor related protein 1 ISO RGD PMID:19299462 RGD:13800552 NCBI chrNW_004936646:1,326,900...1,407,236
Ensembl chrNW_004936646:1,327,374...1,406,456 		JBrowse link
G Lyar Ly1 antibody reactive involved_in ISO (MGI:6107438|PMID:25735755) UniProt PMID:25735755 MGI:6107438 NCBI chrNW_004936477:16,934,401...16,958,722 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase involved_in ISO
IEA		 RGD
Ensembl		 PMID:11592982 GO_REF:0000107 RGD:69668 NCBI chrNW_004936783:607,425...704,879
Ensembl chrNW_004936783:607,382...704,889 		JBrowse link
G Mex3b mex-3 RNA binding family member B acts_upstream_of_or_within ISO (PMID:24803656) MGI PMID:24803656 NCBI chrNW_004936483:18,766,000...18,771,924
Ensembl chrNW_004936483:18,766,000...18,771,949 		JBrowse link
G Myh9 myosin heavy chain 9 ISO RGD PMID:19117932 RGD:6902913 NCBI chrNW_004936492:4,384,215...4,466,229
Ensembl chrNW_004936492:4,384,215...4,466,262 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19139201) Ensembl
MGI		 PMID:19139201 GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Pla2g5 phospholipase A2 group V involved_in ISO (MGI:3639848|PMID:16407308) UniProt PMID:16407308 MGI:3639848 NCBI chrNW_004936474:6,131,915...6,150,810
Ensembl chrNW_004936474:6,131,884...6,150,819 		JBrowse link
G Pros1 protein S ISO RGD PMID:15949798 RGD:2300013 NCBI chrNW_004936666:18,303...110,357
Ensembl chrNW_004936666:19,387...110,014 		JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO RGD PMID:12912913 RGD:1299194 NCBI chrNW_004936470:10,379,855...10,578,531
Ensembl chrNW_004936470:10,379,872...10,578,543 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258 		JBrowse link
G Ptprj protein tyrosine phosphatase receptor type J involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,161,764...1,234,800
Ensembl chrNW_004936562:1,165,304...1,211,817 		JBrowse link
G Ptx3 pentraxin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14726497) Ensembl
MGI		 PMID:14726497 GO_REF:0000107 NCBI chrNW_004936519:4,303,549...4,309,143
Ensembl chrNW_004936519:4,303,464...4,309,173 		JBrowse link
G Pycard PYD and CARD domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,550,702...13,552,774
Ensembl chrNW_004936501:13,550,679...13,552,805 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO RGD PMID:18832707 RGD:9835043 NCBI chrNW_004936690:275,840...363,752
Ensembl chrNW_004936690:315,752...366,413 		JBrowse link
G Rap1gap RAP1 GTPase activating protein acts_upstream_of_or_within ISO (PMID:24803656) MGI PMID:24803656 NCBI chrNW_004936474:7,242,528...7,284,342
Ensembl chrNW_004936474:7,242,824...7,284,395 		JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 ISO RGD PMID:18832707 RGD:9835043 NCBI chrNW_004936487:18,305,537...18,411,170
Ensembl chrNW_004936487:18,305,488...18,410,952 		JBrowse link
G Sftpd surfactant protein D ISO RGD PMID:15591410 RGD:4144046 NCBI chrNW_004936716:60,754...73,010
Ensembl chrNW_004936716:60,656...73,099 		JBrowse link
G Sirpa signal regulatory protein alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14634079) TreeGrafter
MGI		 PMID:14634079 GO_REF:0000118 NCBI chrNW_004936485:16,608,317...16,654,552 JBrowse link
G Slc11a1 solute carrier family 11 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18984740)
(PMID:18456389)		 Ensembl
MGI		 PMID:18456389 PMID:18984740 GO_REF:0000107 NCBI chrNW_004936569:888,309...895,991
Ensembl chrNW_004936569:887,742...895,977 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:10,345,154...10,352,873
Ensembl chrNW_004936500:10,345,154...10,352,867 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,659,725...18,665,406
Ensembl chrNW_004936476:18,659,815...18,663,940 		JBrowse link
G Tub TUB bipartite transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:9,829,889...9,912,645
Ensembl chrNW_004936528:9,834,954...9,855,080 		JBrowse link
G Tulp1 TUB like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:23,744,707...23,757,002
Ensembl chrNW_004936476:23,744,757...23,756,565 		JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end-product specific receptor ISO RGD PMID:23238794 RGD:8696010 NCBI chrNW_004936727:1,418,342...1,422,005
Ensembl chrNW_004936727:1,418,799...1,422,147 		JBrowse link
G Ano6 anoctamin 6 involved_in ISO (MGI:5634870|PMID:25651887) UniProt PMID:25651887 MGI:5634870 NCBI chrNW_004936512:3,649,103...3,736,274
Ensembl chrNW_004936512:3,540,129...3,732,776 		JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:9,477,483...9,526,692
Ensembl chrNW_004936492:9,477,373...9,526,692 		JBrowse link
G C3 complement C3 involved_in ISO (MGI:5905548|PMID:20199584)
(MGI:5319446|PMID:22438044), (MGI:6189359|PMID:22632727)		 ARUK-UCL PMID:20199584 PMID:22438044 PMID:22632727 MGI:5319446 MGI:5905548 MGI:6189359 NCBI chrNW_004936588:3,985,732...4,023,221 JBrowse link
G Cd36 CD36 molecule (CD36 blood group) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16061696) Ensembl
MGI		 PMID:16061696 GO_REF:0000107 NCBI chrNW_004936810:791,823...838,303
Ensembl chrNW_004936810:758,182...838,365 		JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:142,281...153,575
Ensembl chrNW_004936549:141,512...153,602 		JBrowse link
G Fcgr1a Fc fragment of IgG receptor Ia ISO RGD PMID:19657115 RGD:9685698 NCBI chrNW_004936580:115,552...144,970
Ensembl chrNW_004936580:115,450...145,785 		JBrowse link
G Gata2 GATA binding protein 2 ISO RGD PMID:12933836 RGD:632788 NCBI chrNW_004936798:406,258...414,785
Ensembl chrNW_004936798:406,258...414,931 		JBrowse link
G Itga2 integrin subunit alpha 2 ISO RGD PMID:9284952 RGD:2307413 NCBI chrNW_004936480:14,320,292...14,417,828
Ensembl chrNW_004936480:14,320,692...14,417,786 		JBrowse link
G Lbp lipopolysaccharide binding protein ISO RGD PMID:11104656 RGD:9685187 NCBI chrNW_004936561:3,017,471...3,035,481
Ensembl chrNW_004936561:3,016,926...3,035,552 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,683,330...11,734,423
Ensembl chrNW_004936512:11,683,321...11,734,391 		JBrowse link
G Plcg2 phospholipase C gamma 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32514138) ARUK-UCL
Ensembl		 PMID:32514138 GO_REF:0000107 NCBI chrNW_004936475:29,248,533...29,377,335
Ensembl chrNW_004936475:29,248,516...29,377,206 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO RGD PMID:15940641 RGD:8553017 NCBI chrNW_004936602:1,230,907...1,368,588
Ensembl chrNW_004936602:1,230,907...1,304,743 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in ISO (MGI:6271154|PMID:25568335) UniProt PMID:25568335 MGI:6271154 NCBI chrNW_004936626:1,628,379...1,673,150
Ensembl chrNW_004936626:1,628,451...1,660,510 		JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936582:877,241...908,697
Ensembl chrNW_004936582:877,474...913,770 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:32514138) ARUK-UCL
TreeGrafter
Ensembl		 PMID:32514138 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:18,659,725...18,665,406
Ensembl chrNW_004936476:18,659,815...18,663,940 		JBrowse link
regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgm2 transglutaminase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:3,178,244...3,207,551
Ensembl chrNW_004936561:3,178,293...3,207,561 		JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:3,232,183...3,241,307
Ensembl chrNW_004936677:3,232,183...3,241,253 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      regulation of cellular process 10354
        regulation of cellular component organization 2619
          regulation of endocytosis 339
            regulation of phagocytosis 104
              negative regulation of phagocytosis + 22
              positive regulation of phagocytosis + 74
              regulation of apoptotic cell clearance + 7
              regulation of phagocytosis, engulfment + 18
Path 2
Term Annotations click to browse term
  biological_process 15971
    localization 5183
      establishment of localization 4492
        transport 4193
          vesicle-mediated transport 1536
            regulation of vesicle-mediated transport 616
              regulation of endocytosis 339
                regulation of phagocytosis 104
                  negative regulation of phagocytosis + 22
                  positive regulation of phagocytosis + 74
                  regulation of apoptotic cell clearance + 7
                  regulation of phagocytosis, engulfment + 18
paths to the root