Letmd1 (LETM1 domain containing 1)

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Gene: Letmd1 (LETM1 domain containing 1) Ictidomys tridecemlineatus

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Symbol:

Letmd1

Name:

LETM1 domain containing 1

RGD ID:

12493401

Description:

ENCODES a protein that exhibits molecular adaptor activity (inferred); ribosome binding (inferred); INVOLVED IN intracellular monoatomic cation homeostasis (inferred); mitochondrion organization (inferred); positive regulation of cold-induced thermogenesis (inferred); ASSOCIATED WITH breast cancer (ortholog); ovarian carcinoma (ortholog); renal carcinoma (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LETM1 domain containing 1, transcript variant X1; LETM1 domain containing 1, transcript variant X2; LETM1 domain containing 1, transcript variant X3; LETM1 domain containing 1, transcript variant X4; LETM1 domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,468,798 - 64,480,237 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,684,587 - 8,694,074 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,684,597 - 8,694,074 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

ovarian carcinoma (ISO)

renal carcinoma (ISO)

stomach carcinoma (ISO)

uterine cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular monoatomic cation homeostasis (IEA)

mitochondrion organization (IEA)

positive regulation of cold-induced thermogenesis (IEA)

regulation of inflammatory response (IEA)

regulation of phagocytosis (IEA)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrion (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA,ISO)

Molecular Function

molecular adaptor activity (IEA)

protein binding (ISO)

ribosome binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Letmd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,468,798 - 64,480,237 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,684,587 - 8,694,074 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,684,597 - 8,694,074 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LETMD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	51,048,220 - 51,068,958 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	51,047,962 - 51,060,424 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	51,442,003 - 51,462,741 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	49,728,351 - 49,740,474 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	49,728,398 - 49,740,468	NCBI
Celera	12	50,244,071 - 50,256,194 (+)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	48,474,666 - 48,486,493 (+)	NCBI		HuRef
CHM1_1	12	51,408,361 - 51,420,485 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	51,011,103 - 51,031,877 (+)	NCBI		T2T-CHM13v2.0

Letmd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	100,360,302 - 100,377,133 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	100,366,904 - 100,377,045 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	100,462,421 - 100,479,252 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	100,469,023 - 100,479,164 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	100,299,465 - 100,309,683 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	100,297,128 - 100,307,198 (+)	NCBI		MGSCv36	mm8
Celera	15	102,621,292 - 102,631,510 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.31	NCBI

Letmd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,461,920 - 133,476,592 (+)	NCBI		GRCr8
mRatBN7.2	7	131,584,241 - 131,597,797 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,584,259 - 131,597,796 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	133,386,530 - 133,396,013 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,612,107 - 135,621,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,525,758 - 135,535,244 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,106,364 - 142,119,900 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,106,465 - 142,119,899 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	139,913,885 - 139,927,371 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	139,172,373 - 139,181,857 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	128,061,659 - 128,071,143 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Letmd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	1,574,265 - 1,582,786 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955547	1,574,210 - 1,586,432 (+)	NCBI	ChiLan1.0	ChiLan1.0

LETMD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	43,125,558 - 43,138,023 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	43,122,320 - 43,134,785 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	37,685,741 - 37,705,104 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	38,587,366 - 38,609,810 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	38,597,728 - 38,609,810 (-)	Ensembl	panpan1.1		panPan2

LETMD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	3,761,880 - 3,770,158 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	3,761,203 - 3,770,103 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	42,486,087 - 42,494,364 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	3,809,305 - 3,817,581 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	3,809,309 - 3,817,542 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	3,776,041 - 3,784,312 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	3,763,396 - 3,771,684 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	42,882,837 - 42,891,111 (+)	NCBI		UU_Cfam_GSD_1.0

LETMD1
(Sus scrofa - pig)

No map positions available.

LETMD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	47,258,097 - 47,270,474 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	47,258,084 - 47,270,756 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	198,830,226 - 198,842,605 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Letmd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	1,158,662 - 1,170,988 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	1,148,634 - 1,170,981 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021726160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005731826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000009101 ⟹ ENSSTOP00000008160

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	8,684,587 - 8,694,074 (+)	Ensembl

RefSeq Acc Id:

XM_021726160 ⟹ XP_021581835

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,470,742 - 64,480,237 (-)	NCBI
SpeTri2.0	NW_004936512	8,684,903 - 8,694,074 (+)	NCBI

Sequence:

show sequence

ATTCTCTGAGACTTGTTTTTACATTAGGAATCCCAGGTGTGAGGGGTTTCTAGGACTGGTTCCC
AGATAGTCTCTTTGATCTTCCTTGTAGGTCGTCAAAGCTTCACCTTTCTCCAAAGGCAGATGTG
AAGAGTTTGATCTCTTACGTTGTGACCAAGACAAAAGCGATTAATGGGAAATACCATCGTTTCT
TGAATCGTCATTTCCCCCGCTTCTATATCCTGTACACAACCTTCATGAAAGGATTTCAGATGTT
ATGGGCTGATGCCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATATAAAGTTT
CATCAACTTTCATACCGGGAGATGGAGCATTTGAGACAGTTCCGCCGAGACATTGCCAAGTGTC
TTTTCCTAGGTATCATTTCCATTCCACCCTTTGCCAACTACCTGGTCTTCTTGCTAATGTACCT
ATTTCCAAGGCAACTACTGATTAAATATTTCTGGACCCCAAAACAACAAACTGATTTCTTAGAT
ATCTATCATGGTCTCCGGAAGCAGTCCCACTCAGAAATCCTTAGTAATTTAGAGAGGGTCATTC
CTCTCATTTCTGATCCAGGACTTCGGTGGCATTTGACAGACCTGTGCACTAAGATACAGAATGG
TACCCACCCAGCTGTACATGAAATCCTGGCTCTCAGAGAGTGTTTCTGTAACCATCCTCTGGGC
ATGAACCAGCTCCAGACTTTGCAGATGAAAGCCTTGAGCCGGGCCATGCTTCTCACACCTCACC
TGCCTCCTCCCTTTTTGAGGCATCGTTTGAAGACTCATACCACTGTTATTCACCAGCTGGACAG
GGCTTTGGCAAAGCTGGGGATTGGCCAGTTGACTGCTCAGGAAGTAAAATCGGCTTGTTATCTT
CGTGGCCTGAATTCTACTCATATTGCAGAAGACAGGTGTCGAACTTGGCTGGGAGAATGGCTAC
AAATTTCCTGCAGCTTGAAAGAAGCTGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCTTTC
CACCAACTACCTTGGGACAAGGCGCTGAGAGAACTGTGGAGTGGATGGCAATGTCCTGCAGTCG
CGTAGCATAGCAGTGTGGGACCAAACAGCACTTGTCAGCAGAGTCTGTGCACTCCTCAGGTGTG
TGGGAGGCAGAGGAGTGGGTGCAATGGGCTACACAGCACACTACCCATGAGGGAACTGCAGACA
TTCCCCTTACAGCTTGAACTAAAACAAACCCTCTTTTCAGGGATGGCCCATGTGAAGTGTCCTC
CTATCTTCACAGTAAGCTGGAGCTGGCAGCAACCTCTTAACTAGTCTTTTCCTGTGTGTGTTAT
GGTCAGGTCCTATAGTCAGTTATTGCCCCCCGGTGGGAATCATTTGGCCTAAGATTCATCAACT
GCCATGTTCTCTACAGTTGTATTCTAAAGAATTTCTGATTGGCACTTGGTGTGGTGGCATACGC
CTCCCCGTGGCTTGGGAGCTGAGGCAGGAGGATCACAAGTTCAAGACCAGCCTCAACAAGTTAG
CAAGAACTTGTCTCAAAAAATGAAAAGGGATGGGAATTTGGCTCAGTGGGTAAATGCCCCTGGG
TTCAATCCCTGGTACCAAAAAAAAAAAAAAGAAGAAAAAAAATTTCTGGCTGGCAAGAACAACA
CTGCTTAATCTGGAGCATTTACATAAATGTATATCTTTCAATGTGCTCTTCCATCCGGATATGA
CCCAAAAGAGGGATTTTTGTTTTTCTTTCTCACTGGCATGAGCTAACCACTTCCTTTCCTTTTA
AAATCCTTTGAATACCTTAAAAATTTTTTTTTTCAAGTATTAACTTATGGGAACATTGTAAAGG
AAAAGATTAAAAGGAAGTACCATCTAATCCCTTCCCTAGTGTTTACAGCCTTCATCCCCCATTG
TCTTAATTTCTGGGCTGTCATACAGCCCGTAAAGATCTTAAACTCTTTGCTACCTCCACTGTGT
TGCAGCAATCCAACTGTAACCAACAGTGGCTGCCTTCTTTGGGCCATGGGTCAAAACCCATAAG
GTACTAATTACTGCCCAGCCCTGGGAGACCAGGAAGATCTGCATCAAGATAGTAAGTTGGGTTT
AGCTTTTGTGTGTACATTCTTGACCTATAGTTCTGTAATAACTTATTGTAAATGCATGGAGCAC
TGTTTTAAACCCAAGTAAAGACTGCCTGAAATCA

hide sequence

RefSeq Acc Id:

XM_021726162 ⟹ XP_021581837

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,470,742 - 64,480,237 (-)	NCBI
SpeTri2.0	NW_004936512	8,684,598 - 8,694,074 (+)	NCBI

Sequence:

show sequence

CCTGATTTCTGACCCTCTCGACTCTCAGTGTTTCATATTGGTTGATCCCCACAACCCGGGCTCA
TCTTTCAGCCTCTCTTTTTTGGCTTAGGTTTTACCGCCGCTATCTCCATCCACCCTCTCTCTGT
CCTTAGCTTGCAGTTCAGATTGCCCCATAGCCCTGCACTCTGTCCAGGCTCATACCACTTCCAG
ACTTCTCTTCCCGCTTGACTTCTGCCTGATGTGTCCTTCTCAATCTGATTGCTTCTCTCTCCTT
GACCCCAAGATCAAGTTTCTTGAACTTCAGGTCGTCAAAGCTTCACCTTTCTCCAAAGGCAGAT
GTGAAGAGTTTGATCTCTTACGTTGTGACCAAGACAAAAGCGATTAATGGGAAATACCATCGTT
TCTTGAATCGTCATTTCCCCCGCTTCTATATCCTGTACACAACCTTCATGAAAGGATTTCAGAT
GTTATGGGCTGATGCCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATATAAAG
TTTCATCAACTTTCATACCGGGAGATGGAGCATTTGAGACAGTTCCGCCGAGACATTGCCAAGT
GTCTTTTCCTAGGTATCATTTCCATTCCACCCTTTGCCAACTACCTGGTCTTCTTGCTAATGTA
CCTATTTCCAAGGCAACTACTGATTAAATATTTCTGGACCCCAAAACAACAAACTGATTTCTTA
GATATCTATCATGGTCTCCGGAAGCAGTCCCACTCAGAAATCCTTAGTAATTTAGAGAGGGTCA
TTCCTCTCATTTCTGATCCAGGACTTCGGTGGCATTTGACAGACCTGTGCACTAAGATACAGAA
TGGTACCCACCCAGCTGTACATGAAATCCTGGCTCTCAGAGAGTGTTTCTGTAACCATCCTCTG
GGCATGAACCAGCTCCAGACTTTGCAGATGAAAGCCTTGAGCCGGGCCATGCTTCTCACACCTC
ACCTGCCTCCTCCCTTTTTGAGGCATCGTTTGAAGACTCATACCACTGTTATTCACCAGCTGGA
CAGGGCTTTGGCAAAGCTGGGGATTGGCCAGTTGACTGCTCAGGAAGTAAAATCGGCTTGTTAT
CTTCGTGGCCTGAATTCTACTCATATTGCAGAAGACAGGTGTCGAACTTGGCTGGGAGAATGGC
TACAAATTTCCTGCAGCTTGAAAGAAGCTGAGCTGTCCCTCTTGCTGCACAACGTGGTCCTGCT
TTCCACCAACTACCTTGGGACAAGGCGCTGAGAGAACTGTGGAGTGGATGGCAATGTCCTGCAG
TCGCGTAGCATAGCAGTGTGGGACCAAACAGCACTTGTCAGCAGAGTCTGTGCACTCCTCAGGT
GTGTGGGAGGCAGAGGAGTGGGTGCAATGGGCTACACAGCACACTACCCATGAGGGAACTGCAG
ACATTCCCCTTACAGCTTGAACTAAAACAAACCCTCTTTTCAGGGATGGCCCATGTGAAGTGTC
CTCCTATCTTCACAGTAAGCTGGAGCTGGCAGCAACCTCTTAACTAGTCTTTTCCTGTGTGTGT
TATGGTCAGGTCCTATAGTCAGTTATTGCCCCCCGGTGGGAATCATTTGGCCTAAGATTCATCA
ACTGCCATGTTCTCTACAGTTGTATTCTAAAGAATTTCTGATTGGCACTTGGTGTGGTGGCATA
CGCCTCCCCGTGGCTTGGGAGCTGAGGCAGGAGGATCACAAGTTCAAGACCAGCCTCAACAAGT
TAGCAAGAACTTGTCTCAAAAAATGAAAAGGGATGGGAATTTGGCTCAGTGGGTAAATGCCCCT
GGGTTCAATCCCTGGTACCAAAAAAAAAAAAAAGAAGAAAAAAAATTTCTGGCTGGCAAGAACA
ACACTGCTTAATCTGGAGCATTTACATAAATGTATATCTTTCAATGTGCTCTTCCATCCGGATA
TGACCCAAAAGAGGGATTTTTGTTTTTCTTTCTCACTGGCATGAGCTAACCACTTCCTTTCCTT
TTAAAATCCTTTGAATACCTTAAAAATTTTTTTTTTCAAGTATTAACTTATGGGAACATTGTAA
AGGAAAAGATTAAAAGGAAGTACCATCTAATCCCTTCCCTAGTGTTTACAGCCTTCATCCCCCA
TTGTCTTAATTTCTGGGCTGTCATACAGCCCGTAAAGATCTTAAACTCTTTGCTACCTCCACTG
TGTTGCAGCAATCCAACTGTAACCAACAGTGGCTGCCTTCTTTGGGCCATGGGTCAAAACCCAT
AAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAAGATCTGCATCAAGATAGTAAGTTGGG
TTTAGCTTTTGTGTGTACATTCTTGACCTATAGTTCTGTAATAACTTATTGTAAATGCATGGAG
CACTGTTTTAAACCCAAGTAAAGACTGCCTGAAATCA

hide sequence

RefSeq Acc Id:

XM_021726164 ⟹ XP_021581839

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,470,742 - 64,480,237 (-)	NCBI
SpeTri2.0	NW_004936512	8,684,901 - 8,694,074 (+)	NCBI

Sequence:

show sequence

ACATTCTCTGAGACTTGTTTTTACATTAGGAATCCCAGGTGTGAGGGGTTTCTAGGACTGGTTC
CCAGATAGTCTCTTTGATCTTCCTTGTAGGTCGTCAAAGCTTCACCTTTCTCCAAAGGCAGATG
TGAAGAGTTTGATCTCTTACGTTGTGACCAAGACAAAAGCGATTAATGGGAAATACCATCGTTT
CTTGAATCGTCATTTCCCCCGCTTCTATATCCTGTACACAACCTTCATGAAAGGATTTCAGATG
TTATGGGCTGATGCCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATATAAAGT
TTCATCAACTTTCATACCGGGAGATGGAGCATTTGAGACAGTTCCGCCGAGACATTGCCAAGTG
TCTTTTCCTAGGTATCATTTCCATTCCACCCTTTGCCAACTACCTGGTCTTCTTGCTAATGTAC
CTATTTCCAAGGCAACTACTGATTAAATATTTCTGGACCCCAAAACAACAAACTGATTTCTTAG
ATATCTATCATGGTCTCCGGAAGCAGTCCCACTCAGAAATCCTTAGTAATTTAGAGAGGGTCAT
TCCTCTCATTTCTGATCCAGGACTTCGGTGGCATTTGACAGACCTGTGCACTAAGATACAGAAT
GGTACCCACCCAGCTGTACATGAAATCCTGGCTCTCAGAGAGTGTTTCTGTAACCATCCTCTGG
GCATGAACCAGCTCCAGACTTTGCAGATGAAAGCCTTGAGCCGGGCCATGCTTCTCACACCTCA
CCTGCCTCCTCCCTTTTTGAGGCATCGTTTGAAGACTCATACCACTGTTATTCACCAGCTGGAC
AGGGCTTTGGCAAAGCTGGGGATTGGCCAGTTGACTGCTCAGGAAGTAAAATCGAAGACAGGTG
TCGAACTTGGCTGGGAGAATGGCTACAAATTTCCTGCAGCTTGAAAGAAGCTGAGCTGTCCCTC
TTGCTGCACAACGTGGTCCTGCTTTCCACCAACTACCTTGGGACAAGGCGCTGAGAGAACTGTG
GAGTGGATGGCAATGTCCTGCAGTCGCGTAGCATAGCAGTGTGGGACCAAACAGCACTTGTCAG
CAGAGTCTGTGCACTCCTCAGGTGTGTGGGAGGCAGAGGAGTGGGTGCAATGGGCTACACAGCA
CACTACCCATGAGGGAACTGCAGACATTCCCCTTACAGCTTGAACTAAAACAAACCCTCTTTTC
AGGGATGGCCCATGTGAAGTGTCCTCCTATCTTCACAGTAAGCTGGAGCTGGCAGCAACCTCTT
AACTAGTCTTTTCCTGTGTGTGTTATGGTCAGGTCCTATAGTCAGTTATTGCCCCCCGGTGGGA
ATCATTTGGCCTAAGATTCATCAACTGCCATGTTCTCTACAGTTGTATTCTAAAGAATTTCTGA
TTGGCACTTGGTGTGGTGGCATACGCCTCCCCGTGGCTTGGGAGCTGAGGCAGGAGGATCACAA
GTTCAAGACCAGCCTCAACAAGTTAGCAAGAACTTGTCTCAAAAAATGAAAAGGGATGGGAATT
TGGCTCAGTGGGTAAATGCCCCTGGGTTCAATCCCTGGTACCAAAAAAAAAAAAAAGAAGAAAA
AAAATTTCTGGCTGGCAAGAACAACACTGCTTAATCTGGAGCATTTACATAAATGTATATCTTT
CAATGTGCTCTTCCATCCGGATATGACCCAAAAGAGGGATTTTTGTTTTTCTTTCTCACTGGCA
TGAGCTAACCACTTCCTTTCCTTTTAAAATCCTTTGAATACCTTAAAAATTTTTTTTTTCAAGT
ATTAACTTATGGGAACATTGTAAAGGAAAAGATTAAAAGGAAGTACCATCTAATCCCTTCCCTA
GTGTTTACAGCCTTCATCCCCCATTGTCTTAATTTCTGGGCTGTCATACAGCCCGTAAAGATCT
TAAACTCTTTGCTACCTCCACTGTGTTGCAGCAATCCAACTGTAACCAACAGTGGCTGCCTTCT
TTGGGCCATGGGTCAAAACCCATAAGGTACTAATTACTGCCCAGCCCTGGGAGACCAGGAAGAT
CTGCATCAAGATAGTAAGTTGGGTTTAGCTTTTGTGTGTACATTCTTGACCTATAGTTCTGTAA
TAACTTATTGTAAATGCATGGAGCACTGTTTTAAACCCAAGTAAAGACTGCCTGAAATCA

hide sequence

RefSeq Acc Id:

XM_040280634 ⟹ XP_040136568

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,470,742 - 64,480,237 (-)	NCBI

RefSeq Acc Id:

XR_005731826

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	64,468,798 - 64,480,237 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021581835	(Get FASTA)	NCBI Sequence Viewer
	XP_021581837	(Get FASTA)	NCBI Sequence Viewer
	XP_021581839	(Get FASTA)	NCBI Sequence Viewer
	XP_040136568	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008160.3
GenBank Protein	KAG3291958	(Get FASTA)	NCBI Sequence Viewer
	KAG3291959	(Get FASTA)	NCBI Sequence Viewer
	KAG3291960	(Get FASTA)	NCBI Sequence Viewer
	KAG3291961	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021581837 ⟸ XM_021726162
- Peptide Label:	isoform X1
- UniProtKB:	I3MCX9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKGFQMLWADAKKARRIKTNMWKHNIKFHQLSYREMEHLRQFRRDIAKCLFLGIISIPPFANYL VFLLMYLFPRQLLIKYFWTPKQQTDFLDIYHGLRKQSHSEILSNLERVIPLISDPGLRWHLTDL CTKIQNGTHPAVHEILALRECFCNHPLGMNQLQTLQMKALSRAMLLTPHLPPPFLRHRLKTHTT VIHQLDRALAKLGIGQLTAQEVKSACYLRGLNSTHIAEDRCRTWLGEWLQISCSLKEAELSLLL HNVVLLSTNYLGTRR hide sequence

RefSeq Acc Id:

XP_021581839 ⟸ XM_021726164

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKGFQMLWADAKKARRIKTNMWKHNIKFHQLSYREMEHLRQFRRDIAKCLFLGIISIPPFANYL
VFLLMYLFPRQLLIKYFWTPKQQTDFLDIYHGLRKQSHSEILSNLERVIPLISDPGLRWHLTDL
CTKIQNGTHPAVHEILALRECFCNHPLGMNQLQTLQMKALSRAMLLTPHLPPPFLRHRLKTHTT
VIHQLDRALAKLGIGQLTAQEVKSKTGVELGWENGYKFPAA

hide sequence

RefSeq Acc Id:	XP_021581835 ⟸ XM_021726160
- Peptide Label:	isoform X1
- UniProtKB:	I3MCX9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKGFQMLWADAKKARRIKTNMWKHNIKFHQLSYREMEHLRQFRRDIAKCLFLGIISIPPFANYL VFLLMYLFPRQLLIKYFWTPKQQTDFLDIYHGLRKQSHSEILSNLERVIPLISDPGLRWHLTDL CTKIQNGTHPAVHEILALRECFCNHPLGMNQLQTLQMKALSRAMLLTPHLPPPFLRHRLKTHTT VIHQLDRALAKLGIGQLTAQEVKSACYLRGLNSTHIAEDRCRTWLGEWLQISCSLKEAELSLLL HNVVLLSTNYLGTRR hide sequence

RefSeq Acc Id:	XP_040136568 ⟸ XM_040280634
- Peptide Label:	isoform X2
- UniProtKB:	I3MCX9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000008160 ⟸ ENSSTOT00000009101

Protein Domains

Letm1 RBD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009107	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009101.3	UniProtKB/TrEMBL
InterPro	LETM1/MDM38-like	UniProtKB/TrEMBL
	LETM1_RBD	UniProtKB/TrEMBL
NCBI Gene	Letmd1	ENTREZGENE
PANTHER	LETM1 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR14009	UniProtKB/TrEMBL
Pfam	LETM1	UniProtKB/TrEMBL
PROSITE	LETM1_RBD	UniProtKB/TrEMBL
UniProt	I3MCX9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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