Rap1a (RAP1A, member of RAS oncogene family) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rap1a (RAP1A, member of RAS oncogene family) Ictidomys tridecemlineatus
Analyze
Symbol: Rap1a
Name: RAP1A, member of RAS oncogene family
RGD ID: 12542220
Description: ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to glucose stimulus (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Hyperoxaluria (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RAP1A, member of RAS oncogene family, transcript variant X1; RAP1A, member of RAS oncogene family, transcript variant X2; RAP1A, member of RAS oncogene family, transcript variant X3; ras-related protein Rap-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505817,112,394 - 17,201,855 (-)NCBI
SpeTri2.0NW_004936690275,840 - 363,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Rap1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505817,112,394 - 17,201,855 (-)NCBI
SpeTri2.0NW_004936690275,840 - 363,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1111,542,218 - 111,716,691 (+)EnsemblGRCh38hg38GRCh38
GRCh381111,542,009 - 111,716,691 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371112,084,631 - 112,259,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,963,928 - 112,057,624 (+)NCBINCBI36hg18NCBI36
Build 341111,874,446 - 111,968,142NCBI
Celera1110,480,558 - 110,502,712 (+)NCBI
Cytogenetic Map1p13.2NCBI
HuRef1110,033,768 - 110,127,466 (+)NCBIHuRef
CHM1_11112,277,395 - 112,371,081 (+)NCBICHM1_1
Rap1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393105,634,576 - 105,708,740 (-)NCBIGRCm39mm39
GRCm39 Ensembl3105,634,583 - 105,708,652 (-)Ensembl
GRCm383105,727,260 - 105,801,394 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,727,267 - 105,801,336 (-)EnsemblGRCm38mm10GRCm38
MGSCv373105,531,200 - 105,604,254 (-)NCBIGRCm37mm9NCBIm37
MGSCv363105,856,338 - 105,929,392 (-)NCBImm8
Celera3107,917,236 - 107,990,252 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map346.45NCBI
Rap1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22193,208,631 - 193,286,513 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2193,208,635 - 193,286,501 (-)Ensembl
Rnor_6.02208,193,950 - 208,215,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2208,193,954 - 208,215,187 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02227,614,901 - 227,691,823 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42200,980,324 - 201,001,561 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12200,943,077 - 201,020,962 (-)NCBI
Celera2185,670,857 - 185,692,256 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rap1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543515,150,827 - 15,171,397 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543515,090,521 - 15,171,397 (+)NCBIChiLan1.0ChiLan1.0
RAP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11125,971,599 - 126,068,180 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1125,971,598 - 125,994,813 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01114,279,255 - 114,376,977 (+)NCBIMhudiblu_PPA_v0panPan3
RAP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11763,725,812 - 63,795,359 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1763,726,248 - 63,746,881 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1763,239,140 - 63,309,862 (-)NCBI
ROS_Cfam_1.01764,898,732 - 64,969,490 (-)NCBI
UMICH_Zoey_3.11763,631,539 - 63,702,422 (-)NCBI
UNSW_CanFamBas_1.01763,690,887 - 63,761,587 (-)NCBI
UU_Cfam_GSD_1.01764,488,459 - 64,559,217 (-)NCBI
RAP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4108,676,685 - 108,749,725 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14108,675,537 - 108,750,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24118,823,007 - 118,897,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12021,895,829 - 21,989,008 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2021,899,669 - 21,917,350 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603836,490,746 - 36,600,954 (+)NCBIVero_WHO_p1.0
Rap1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247727,340,152 - 7,425,218 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013363951   ⟹   XP_013219405
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505817,112,394 - 17,198,477 (-)NCBI
SpeTri2.0NW_004936690275,840 - 363,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287399   ⟹   XP_040143333
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505817,112,394 - 17,198,477 (-)NCBI
RefSeq Acc Id: XM_040287400   ⟹   XP_040143334
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505817,112,394 - 17,201,855 (-)NCBI
RefSeq Acc Id: XM_040287401   ⟹   XP_040143335
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505817,112,394 - 17,130,056 (-)NCBI
RefSeq Acc Id: XR_005734783
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505817,112,394 - 17,198,477 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013219405   ⟸   XM_013363951
- Peptide Label: isoform X1
- UniProtKB: I3MSC2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143334   ⟸   XM_040287400
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143333   ⟸   XM_040287399
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143335   ⟸   XM_040287401
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027847 ENTREZGENE
NCBI Gene Rap1a ENTREZGENE
UniProt I3MSC2 ENTREZGENE