Fcn3 (ficolin 3) - Rat Genome Database

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Gene: Fcn3 (ficolin 3) Ictidomys tridecemlineatus
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Symbol: Fcn3
Name: ficolin 3
RGD ID: 12439778
Description: ENCODES a protein that exhibits antigen binding (ortholog); carbohydrate derivative binding (ortholog); INVOLVED IN complement activation (ortholog); complement activation, lectin pathway (ortholog); defense response to virus (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Immunodeficiency due to Ficolin 3 Deficiency (ortholog); microcephaly (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen); LOW QUALITY PROTEIN: ficolin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,855,319 - 45,861,098 (-)NCBI
SpeTri2.0NW_00493647411,680,166 - 11,685,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Fcn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,855,319 - 45,861,098 (-)NCBI
SpeTri2.0NW_00493647411,680,166 - 11,685,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,369,110 - 27,374,824 (-)EnsemblGRCh38hg38GRCh38
GRCh38127,369,110 - 27,374,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,695,601 - 27,701,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,568,188 - 27,573,902 (-)NCBINCBI36hg18NCBI36
Build 34127,379,744 - 27,385,457NCBI
Celera126,092,884 - 26,098,611 (-)NCBI
Cytogenetic Map1p36.11NCBI
HuRef125,951,741 - 25,957,459 (-)NCBIHuRef
CHM1_1127,810,336 - 27,816,061 (-)NCBICHM1_1
Fcna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,514,677 - 25,525,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl225,514,678 - 25,518,042 (-)Ensembl
GRCm38225,624,665 - 25,635,440 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,624,666 - 25,628,030 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,480,187 - 25,483,494 (-)NCBIGRCm37mm9NCBIm37
MGSCv36225,446,675 - 25,449,923 (-)NCBImm8
Celera225,353,030 - 25,356,335 (-)NCBICelera
Cytogenetic Map2A3NCBI
Fcna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,445,904 - 8,449,128 (-)NCBI
Rnor_6.0 Ensembl32,849,984 - 2,853,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.032,850,006 - 2,853,230 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.032,831,419 - 2,834,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,797,916 - 3,801,117 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,797,915 - 3,801,117 (-)NCBI
Celera33,270,846 - 3,274,047 (-)NCBICelera
Cytogenetic Map3p13NCBI
Fcn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,630,505 - 6,635,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,630,548 - 6,635,334 (-)NCBIChiLan1.0ChiLan1.0
FCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,676,740 - 27,683,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,676,866 - 27,683,861 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,620,373 - 26,636,424 (-)NCBIMhudiblu_PPA_v0panPan3
FCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha269,476,250 - 69,480,708 (+)NCBI
ROS_Cfam_1.0273,460,937 - 73,465,399 (+)NCBI
UMICH_Zoey_3.1270,286,939 - 70,291,401 (+)NCBI
UNSW_CanFamBas_1.0271,298,410 - 71,302,868 (+)NCBI
UU_Cfam_GSD_1.0272,294,469 - 72,298,931 (+)NCBI
FCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11274,125,666 - 274,132,917 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21308,216,807 - 308,224,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,414,626 - 105,420,684 (+)NCBI
ChlSab1.1 Ensembl20105,414,650 - 105,420,558 (+)Ensembl
Vero_WHO_p1.0NW_02366603311,038,178 - 11,049,768 (-)NCBI
Fcn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476411,265,740 - 11,269,588 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021720591   ⟹   XP_021576266
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647411,680,166 - 11,685,214 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289165   ⟹   XP_040145099
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,855,319 - 45,861,098 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040145099 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021576266   ⟸   XM_021720591
- Sequence:
RefSeq Acc Id: XP_040145099   ⟸   XM_040289165


Additional Information

Database Acc Id Source(s)
NCBI Gene Fcn3 ENTREZGENE