Hck (HCK proto-oncogene, Src family tyrosine kinase) - Rat Genome Database

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Gene: Hck (HCK proto-oncogene, Src family tyrosine kinase) Ictidomys tridecemlineatus
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Symbol: Hck
Name: HCK proto-oncogene, Src family tyrosine kinase
RGD ID: 12532404
Description: ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); phagocytosis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autoimmune disease (ortholog); Autoinflammation with Pulmonary and Cutaneous Vasculitis (ortholog); FOUND IN actin filament (inferred); caveola (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hemopoietic cell kinase; tyrosine-protein kinase HCK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,546,975 - 170,587,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,978,412 - 19,017,908 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,996,016 - 19,017,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hck
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,546,975 - 170,587,555 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,978,412 - 19,017,908 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,996,016 - 19,017,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HCK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,052,242 - 32,101,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,052,197 - 32,101,856 (+)EnsemblGRCh38hg38GRCh38
GRCh372030,640,045 - 30,689,659 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,103,718 - 30,153,320 (+)NCBINCBI36Build 36hg18NCBI36
Build 342030,103,717 - 30,153,316NCBI
Celera2027,396,349 - 27,446,028 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2027,428,653 - 27,478,333 (+)NCBIHuRef
CHM1_12030,543,895 - 30,593,543 (+)NCBICHM1_1
T2T-CHM13v2.02033,776,868 - 33,826,471 (+)NCBIT2T-CHM13v2.0
Hck
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,950,388 - 152,993,361 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,950,388 - 152,993,361 (+)EnsemblGRCm39 Ensembl
GRCm382153,108,468 - 153,151,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,108,468 - 153,151,441 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,934,204 - 152,977,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,799,949 - 152,842,877 (+)NCBIMGSCv36mm8
Celera2158,934,831 - 158,977,872 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Hck
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,031,833 - 162,074,933 (+)NCBIGRCr8
mRatBN7.23141,571,587 - 141,614,696 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,571,587 - 141,614,693 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3145,476,301 - 145,519,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,060,107 - 154,103,139 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,799,366 - 151,842,281 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,579,917 - 148,623,026 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,579,920 - 148,623,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,982,909 - 155,025,529 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,447,697 - 143,490,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13143,353,318 - 143,395,900 (+)NCBI
Celera3140,318,662 - 140,361,702 (+)NCBICelera
RH 3.4 Map31263.9RGD
Cytogenetic Map3q41NCBI
Hck
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,932,653 - 28,986,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,934,512 - 28,986,998 (-)NCBIChiLan1.0ChiLan1.0
HCK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,749,456 - 37,798,596 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,742,549 - 37,791,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02028,346,244 - 28,395,370 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12029,474,737 - 29,523,399 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2029,474,737 - 29,523,399 (+)Ensemblpanpan1.1panPan2
HCK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,473,424 - 21,513,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,473,305 - 21,513,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,120,196 - 21,159,815 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,159,696 - 22,200,184 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,159,611 - 22,200,164 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,438,409 - 21,478,679 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,543,401 - 21,583,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,974,379 - 22,014,637 (+)NCBIUU_Cfam_GSD_1.0
HCK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,709,349 - 35,751,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,708,549 - 35,751,590 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,639,128 - 40,680,366 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HCK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,441,185 - 36,490,205 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,460,495 - 36,490,190 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605090,424,019 - 90,473,182 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hck
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741455,696 - 493,821 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624741456,186 - 494,207 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000004951   ⟹   ENSSTOP00000004441
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648518,978,412 - 19,017,908 (+)Ensembl
RefSeq Acc Id: XM_013356469   ⟹   XP_013211923
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640170,546,975 - 170,586,544 (+)NCBI
SpeTri2.0NW_00493648518,996,016 - 19,017,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274948   ⟹   XP_040130882
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640170,546,975 - 170,586,544 (+)NCBI
RefSeq Acc Id: XM_040274949   ⟹   XP_040130883
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640170,546,975 - 170,587,555 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013211923 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130882 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130883 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004441.3
GenBank Protein KAG3263066 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013211923   ⟸   XM_013356469
- Peptide Label: isoform X2
- UniProtKB: I3M562 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130883   ⟸   XM_040274949
- Peptide Label: isoform X3
- UniProtKB: I3M562 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130882   ⟸   XM_040274948
- Peptide Label: isoform X1
- UniProtKB: I3M562 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004441   ⟸   ENSSTOT00000004951
Protein Domains
Protein kinase   SH2   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004951 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004951.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro HCK_SH2 UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
NCBI Gene Hck ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE HCK UniProtKB/TrEMBL
Pfam PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt I3M562 ENTREZGENE, UniProtKB/TrEMBL